Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1834 ATGGCATTAAACGACGACGCATCAAGGAAGACGACGGGTTCGGTGCTGGGTCAAAAGCGAAACCTTCCATTCAGCAACACCACCATGGCTGTAGCCGGCATCGTGGCCCTCGGCCTCGGCTACATGTTTTATCTCAACAGATCATCTTCAAATCATTCTACCGCCAGAGACGTTGACCGACCTTCTCGGAAGCCCGAGAGATCTTGGTCGGAGGCAAATCCAGTGCCTGGAAAATCCCTTCTTCTCAACCTCATGTGGGATTACGAGGAAGGGAAAGATTCGGTACTGAGAGTGACCAAGGAAGATTACGAAGCCTGCAACACGAAAAGCCCAGTGGAGAAATTCGAGGACGGGAACACGAAGGTGGAGCTGGAGAAGCCAGGGCCATTCTACTTCATCAGTGGAGCGAAGGGCCACTGCGAGCAGGGCCAGAAGCTTGTCGTCGTCGTCATGACTCCTCGCCACAGGTTCATCGGCATCTCTCCGGCGCCTTCTCCGGCGGAGATCGAGGGTCCGGCGGTCGCTCCGTCGAGTGGTGCTGTAAGTTTGAAGGTTGGGTTTGTGGCGGTGGTGCTGGGGATTTTGGGACTTGGAGTTGCTTTCGTTTGA 609 55.01 MALNDDASRKTTGSVLGQKRNLPFSNTTMAVAGIVALGLGYMFYLNRSSSNHSTARDVDRPSRKPERSWSEANPVPGKSLLLNLMWDYEEGKDSVLRVTKEDYEACNTKSPVEKFEDGNTKVELEKPGPFYFISGAKGHCEQGQKLVVVVMTPRHRFIGISPAPSPAEIEGPAVAPSSGAVSLKVGFVAVVLGILGLGVAFV 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 37323574 37325721 + Maker00033964 Lcy13g1834 652139

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1834 202 SUPERFAMILY Cupredoxins 84 151 IPR008972 -
Lcy13g1834 202 MobiDBLite consensus disorder prediction 51 72 - -
Lcy13g1834 202 MobiDBLite consensus disorder prediction 1 20 - -
Lcy13g1834 202 MobiDBLite consensus disorder prediction 53 67 - -
Lcy13g1834 202 Gene3D - 61 154 IPR008972 -
Lcy13g1834 202 PANTHER BLUE COPPER PROTEIN 82 156 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Lcy13g1834 202 ProSiteProfiles Phytocyanin domain profile. 1 152 IPR003245 GO:0009055(InterPro)
Lcy13g1834 202 Pfam Plastocyanin-like domain 84 144 IPR003245 GO:0009055(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1834 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1834 Lcy-Chr13:37323574 Lcy8g1549 Lcy-Chr8:42135098 1.64E-18 dispersed
Lcy13g1834 Lcy-Chr13:37323574 Lcy9g1305 Lcy-Chr9:37782218 3.62E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g584 . . . . Bpe02g01264 . . . Cmo05g00351 Cmo12g00319 . Cma05g00347 . Car12g00349 Sed11g1139 Cpe07g00325 . Bhi04g00052 Tan02g2764 Cmetu03g2012 . Hepe10g0215 . Lcy13g1834 . . . . . . . . . Cone17ag0978 Cone20ag0319 Lsi04g02065 . . . . . Bda01g01015 . . . . . . . . . Cma12g00366 . Car05g00293 . . . . . . . . . Cla08g01369 Cam08g1838 Cec08g1417 Cco08g1549 Clacu08g1533 . Cre08g1316 Lsi08g01251 . Chy03g01081 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010533 1 1 0 0 1 1 2 1 1 1 1 1 2 0 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31