Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1839 ATGGCCAGATATGTCCCATCTTTCATTCCACCTCCATTGGCATCCAAGGGAAAAGAATCTGACAAGAAGGAGCTGGAGAAGCCAAAGGAAAAAGAAAAGGGGAAGTCTAGGAACATTGATCATTTTATGGAGGAGCTGAAGCATGAGCAAGAGATGAGGGAAAGACGAAATCAAGATCGCGAGCATTGGCGTGATGGGCGCCATGGAGAAAATTCAACACCGTCTAGTCGATTTGATGAACTGCCTGATGACTTCGATCCTAGTGGAAAGTTCCCTGGATCATTTGATGATGGAGATCCTCAAACGACTAACCTTTATGTAGGAAATTTATCTCCACAGGTTGATGAGAATTTTCTCCTTCGAACTTTTGGAAGATTTGGACCAATTGCTAGTGTGAAGATAATGTGGCCAAGGACAGAGGAGGAGCGAAGACGGCAAAGAAATTGTGGATTTGTAGCTTTCATGAATAGAGCTGATGGACAGGCTGCAAAGGATGAAATGCAGGGAGTTGTTGTTTATGGGTATGAATTGAAAATCGGATGGGGAAAGTCTGTCGCTCTTCCATCCCAAGCATTACCAGCACCTCCTCCAGGTCATATGGCCATTAGAAGTAAGGAGGGTGGCACTGTTATCTTATCTGGCTCATCAGGACCGCCAGTCACTTCTGTCCCAAATCAAAATTCTGAACTGGTTCTGACGCCTAACATTCCTGATATTACCGTTGAACCACCTGAGGAGGATCATCTCCGCCATGTCATTGACACTATGGCTCTTTACGTTCTCGATGGAGGTTGTGCCTTTGAACAAGCTATTATGGAGAGGGGTCGGGGAAATCCTCTCTTCAACTTCTTGTTTGAGCTTGGTTCAAAAGAACATACATACTATGTGTGGCGACTTTATTCATTTGCTCAGGGGGATACTCTTCAAAGGTGGAGAACTGAACCTTTTATCATGATAACTGGTAGTGGGAGGTGGGTTCCACCGCCTCTTCCAACTGCTAAAAGCCCAGAGGTTGAAAAGGAGTCTGGTCCCACATATGCTGCTGGAAGAAGCAGACGCGTGGAGCTTGAAAGAACATTGACTGATTCACAAAGGGATGAGTTTGAGGACATGCTTCGGGCATTGACACTAGAAAGGAGTCAGATAAAGGAAGCAATGGGGTTTGCATTGGATAATGCTGATGCAGCTGGAGAGATAGTTGAAGTTCTAACAGAATCTTTAACGCTTAGAGAAACTCCTATTCCAACCAAAGTTGCAAGGTTGATGCTTGTGTCTGATATCCTTCATAACAGTAGTGCTCCTGTAAAGAATGCATCTGCATATCGCACAAAATTTGAAGCAACATTACCTGACATCATGGAGAGCTTCAATGATCTATATCGCAGCATAACAGGGAGAATTACGGCAGAGGCCCTCAAGGAACGAGTACTGAAATTATTGCAAGTATGGTCCGATTGGTTTCTGTTCTCAGATGCCTATGTGAATGGATTGCGAGCCACATTCCTTCGCATGGGAAACTCTGGTGTGATCCCTTTTCATTCATTATGTGGTGATGCCCCAGAGATTGAACGGAAGGCTAATTGTGATGATTTAGGAGATGGGGGTAAAATTAATCAAGATGCTGAGTTGGCAATGGGCAAAGGAGGAGCTATGAAGGAGTTAATGAATCTTCCCTTTGGAGAATTAGAAAGAAGGTGCAGGCATAATGGATTATCTCTTGTTGGTGGTAGAGAAATGATGGTTGCACGTTTATTAAGTCTTGAAGAGGCAGAAAAACAGAGTGGATATGAACTTGATGAAGACTTAAAATATAGTAATTCTCATTCTGGAAGATATTCAAGTAGCTCAAGAGAGACTAAAGGTGAACGAGATCCAGCAGAAATTTCTGGATGGAACCGTTTTGGGGATGACGAGACAGATTTCCAAAGGATGGGTTCTGTGCCTATGGCTCAAAGTCTTTCAATTCCACAGCCTGAACTAAAAGGCTTCACAAAGTCTGGGAAAAATGATCCCGTTTTGCCTGCCTCTAAATGGGCTAGGGAGGATGATGAAAGTGACAATGAGCAAAAAGGAGGTACCAGGGGTCTCGGGTTAAGTTACTCATCTTCTGGAAGTGAAAATGCAGGCGATGGTCCTAGTAAAGCTGATGAGATGGAGATAACTACGGAGGCAAGTGTTCTCATGCAACCTGATAGTGGGTTGAATGAAGAGCAGAGACAAAAGTTAAGGCGTGTAGAGGTGGCTTTGATTGAATATCGTGAATCTTTGGAAGAACGGGGCATCAAAAGTGTTGAGGAAATAGAGAGGAGAGTTTTGGTTTATCGTAAACAACTCGAATCTGAATATGGACTGTCAGATTCCAATGAGACTGCATCAAGGAAGAAGAGGAGGGATAGACCGGATGATAGCCATGATTCATCAAGAAAGCTGCAGCGTAGCCGGAGCCATAGTGATAGCCCAATACAGAAGTCATCCAATCGAGACAGGGACAGGGAAAATGACGTGGAGAAGGAGCGAGAAAGATCGAGAGACAGAGACCGCGAAAAGAGTGGAAGCAGAGAGAGGGATGATCATGACCGAGATAGGGGTAAAGAAAGAGATAGAGATAGGAGAAGACGAGCAAAATAA 2628 44.14 MARYVPSFIPPPLASKGKESDKKELEKPKEKEKGKSRNIDHFMEELKHEQEMRERRNQDREHWRDGRHGENSTPSSRFDELPDDFDPSGKFPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYGYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGGTVILSGSSGPPVTSVPNQNSELVLTPNIPDITVEPPEEDHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWVPPPLPTAKSPEVEKESGPTYAAGRSRRVELERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLRETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKLLQVWSDWFLFSDAYVNGLRATFLRMGNSGVIPFHSLCGDAPEIERKANCDDLGDGGKINQDAELAMGKGGAMKELMNLPFGELERRCRHNGLSLVGGREMMVARLLSLEEAEKQSGYELDEDLKYSNSHSGRYSSSSRETKGERDPAEISGWNRFGDDETDFQRMGSVPMAQSLSIPQPELKGFTKSGKNDPVLPASKWAREDDESDNEQKGGTRGLGLSYSSSGSENAGDGPSKADEMEITTEASVLMQPDSGLNEEQRQKLRRVEVALIEYRESLEERGIKSVEEIERRVLVYRKQLESEYGLSDSNETASRKKRRDRPDDSHDSSRKLQRSRSHSDSPIQKSSNRDRDRENDVEKERERSRDRDREKSGSRERDDHDRDRGKERDRDRRRRAK 875
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 37353199 37362309 + Maker00033799 Lcy13g1839 652144

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1839 875 Gene3D - 14 186 IPR012677 -
Lcy13g1839 875 MobiDBLite consensus disorder prediction 328 351 - -
Lcy13g1839 875 Gene3D Surp module 238 307 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Lcy13g1839 875 Pfam Surp module 250 302 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Lcy13g1839 875 MobiDBLite consensus disorder prediction 659 740 - -
Lcy13g1839 875 CDD cwf21_RRC1-like 734 783 IPR047491 -
Lcy13g1839 875 MobiDBLite consensus disorder prediction 16 86 - -
Lcy13g1839 875 MobiDBLite consensus disorder prediction 788 868 - -
Lcy13g1839 875 MobiDBLite consensus disorder prediction 615 640 - -
Lcy13g1839 875 ProSiteProfiles CID domain profile. 360 505 IPR006569 -
Lcy13g1839 875 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 184 IPR000504 GO:0003723(InterPro)
Lcy13g1839 875 SUPERFAMILY Surp module (SWAP domain) 226 307 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Lcy13g1839 875 MobiDBLite consensus disorder prediction 692 709 - -
Lcy13g1839 875 MobiDBLite consensus disorder prediction 775 875 - -
Lcy13g1839 875 Pfam CID domain 367 495 IPR006569 -
Lcy13g1839 875 SUPERFAMILY RNA-binding domain, RBD 96 194 IPR035979 GO:0003676(InterPro)
Lcy13g1839 875 SMART cwf21_2 734 783 IPR013170 -
Lcy13g1839 875 SMART 558neu5 367 502 IPR006569 -
Lcy13g1839 875 Coils Coil 365 385 - -
Lcy13g1839 875 Coils Coil 735 755 - -
Lcy13g1839 875 SMART rrm1_1 104 180 IPR000504 GO:0003723(InterPro)
Lcy13g1839 875 MobiDBLite consensus disorder prediction 598 641 - -
Lcy13g1839 875 Pfam RNA recognition motif 105 178 IPR000504 GO:0003723(InterPro)
Lcy13g1839 875 ProSiteProfiles SURP motif repeat profile. 252 295 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Lcy13g1839 875 PANTHER RNA PROCESSING PROTEIN LD23810P 21 776 IPR051485 GO:0003723(PANTHER)|GO:0005634(PANTHER)
Lcy13g1839 875 MobiDBLite consensus disorder prediction 1 101 - -
Lcy13g1839 875 MobiDBLite consensus disorder prediction 675 690 - -
Lcy13g1839 875 Pfam cwf21 domain 735 781 IPR013170 -
Lcy13g1839 875 SUPERFAMILY ENTH/VHS domain 362 501 IPR008942 -
Lcy13g1839 875 CDD RRM_SR140 102 185 IPR035009 -
Lcy13g1839 875 Gene3D - 734 785 - -
Lcy13g1839 875 SMART surpneu2 250 304 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Lcy13g1839 875 Gene3D - 361 506 IPR008942 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1839 K12842 - - csv:101209274 1545.02
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g594 . . . Bda03g00108 . . Bma04g00100 . Cmo05g00348 Cmo12g00321 . Cma05g00344 . Car12g00350 Sed11g1135 Cpe07g00326 . Bhi04g00058 Tan02g2773 Cmetu03g2041 . . . Lcy13g1839 . . . . . . . . . . . . . . Cme03g01569 . . . . . Bpe04g00092 . . . . . . Cma12g00368 . Car05g00290 Cpe11g00290 . . . . . . . . Cla08g01372 Cam08g1841 Cec08g1419 Cco08g1552 Clacu08g1536 . Cre08g1319 Lsi08g01255 . . .