Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1845 ATGAGGTCATTGCACTCGGCAATTGGGACATCGTTTCGAGCTTTGTCCAATCTTCTTTTAACCCATTCTCAGGCCTTCAAATTGGGTACTATTGCAGACGTTTACATTTGCAACAATATCCTAAATGGGTATTGGAAATGCAAAGAGTTACCGTCTGCAGAGGCACTGTTCGACGAAATGCCACTGAGAGACTCTGTATCTTGGAATACGATGATCGCAGGGCATATAAACTCTGGAAACTTGGAGACTTCATGGGATGTTCTTAAATGCATGAGAAGATGTGGTTTTGAGCTGGATGAGTACACTTTTGGAAGCATGCTTAAGGGCATTGCTTGTGCTAGTATGCTTGATTTGGGTCAGCAAATACATTCTCTGATCATTAAGCTGGGTTATGCTGGAAATGTATATGCTGGGAGTGCTCTTCTGGATATGTATGCAAAATGTGAGAGACTTGAGGATGCATATTTGTCATTCTTAAACATATCGAAACAGAATGCTGTTTCGTGGAATGCAATGATTGCTGGATATGCGCAAACGGGTGACCGTGAAACGGCGTTTTGGTTGTTAGGTTGTATGGAGCAAGAAGGTGAGAAGGTTGATGATGGCACATTTGCTCCTCTTTTGCCTTTGCTTGATGATGCTGACTTTTGTAACATAACAAGGCAGATCCATGGAAAAGTTATAAAGCATGGATTGGAATCTGCTAATACAACGTGCAATGCATTGATCACTTCTTATTCAGAATGTGGATCACTTCATGATGCCAAAAGGATTTTCGATTGTTCGACCGGCATTCGGGATTTGGTGACATGGAACTCCATGTTGGCTGCTTACTTGGTGCATAGTCAGGAAGATCTTGCTTTTAAACTCTTGATTGACATGCAAGAACATGGTTTTCAACCAGACTTGTACTCTTACACAAGCATCATCAGTGCTTGTTTCGACGAAGAGCTTAGCACTAACGGGAAATCCTTACATGGGTTGGTGATAAAGAGGGGATTAGAACAATCACTGCCAATTTCGAATGCATTGATTTCTATGTATCTAAAATCAGACTGTGGTTCCATGAAAGAAGCCCTATGTATATTTGAATCCTTAGAGTTCAAGGACCGCGTGTCTTGGAACTCGATCTTGACTGGATTATCACAAACAGGGTTGAGTGAAGATGCAGTGAAGTCCTTTTTGCATCTGAGATCTGCAGCAATGGACATCGATCACTATTCCTTTTCTGCTGTGCTCAGATCATGCTCAGATTTGGCTACCTTTCAATTGGGACAACAGATTCATGTTTTGGTACTTAAATACGGTTTGGAGTTCAATGAGTTCGTTGCGAGTTCGCTAATCTTCATGTACTCCAAGTGTGGAATTATTGAAGATGCTAGAAAATCATTTGAAGAGGCTTCAAAGAACGCTTCAATCACTTGGAATGCACTCATGTTTGGTTATGCTCAACATGGACAGTGCAATGTTGCATTAGACCTCTTCTTCCTAATGGAAGAGAGGAAGGTGAAAATGGATCACATAACCTTTGTCGCAGTTCTGACAGCCTGTAGCCATATCGGTCTAGTCGAACAGGGCTGCAAATTCTTGCGGAGCATGGAATCCGATTACGGCATTCCTCCACGGATGGAGCACTATGCTTGTGCAGTTGATCTATATGGGCGTTCTGGGCGTCTCGAAGAAGCCAAAGCCTTGATAGAAGAAATGCCATTCAAACCCGACGCCATGGTGTGGAAGACATTTTTGGGGGCCTGCCGTTCGTGTGGCAACATTGAATTGGCTTGTCAGGTTGCGAGCCATCTGCTAGAGATGGAGCCTGAAGAGCACTGCACTTATGTTCTCCTCTCAAACATGTATGGAAATCTAATGAGGTGGGATGAGAAGGCCAAAGTGAAAAGGCTAATGAAGGAAAGAGGAGTTAAGAAAGTCCCTGGTTGGAGTTGGATTGAAGTTGAGAATAATGTACATGCTTTCATTGCAGAAGATCATTCTCATCCCAGTTGCCAACAGATTTACTTTTTACTGGAAGTACTTTTGGAGGAAATCACAAGGATAGAAGCTGCTGATGATTTTGAGAGTTTTTTGGAGCAGGAAGAACTAAGTTATGCAAATGCATAA 2118 42.45 MRSLHSAIGTSFRALSNLLLTHSQAFKLGTIADVYICNNILNGYWKCKELPSAEALFDEMPLRDSVSWNTMIAGHINSGNLETSWDVLKCMRRCGFELDEYTFGSMLKGIACASMLDLGQQIHSLIIKLGYAGNVYAGSALLDMYAKCERLEDAYLSFLNISKQNAVSWNAMIAGYAQTGDRETAFWLLGCMEQEGEKVDDGTFAPLLPLLDDADFCNITRQIHGKVIKHGLESANTTCNALITSYSECGSLHDAKRIFDCSTGIRDLVTWNSMLAAYLVHSQEDLAFKLLIDMQEHGFQPDLYSYTSIISACFDEELSTNGKSLHGLVIKRGLEQSLPISNALISMYLKSDCGSMKEALCIFESLEFKDRVSWNSILTGLSQTGLSEDAVKSFLHLRSAAMDIDHYSFSAVLRSCSDLATFQLGQQIHVLVLKYGLEFNEFVASSLIFMYSKCGIIEDARKSFEEASKNASITWNALMFGYAQHGQCNVALDLFFLMEERKVKMDHITFVAVLTACSHIGLVEQGCKFLRSMESDYGIPPRMEHYACAVDLYGRSGRLEEAKALIEEMPFKPDAMVWKTFLGACRSCGNIELACQVASHLLEMEPEEHCTYVLLSNMYGNLMRWDEKAKVKRLMKERGVKKVPGWSWIEVENNVHAFIAEDHSHPSCQQIYFLLEVLLEEITRIEAADDFESFLEQEELSYANA 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 37399758 37401875 + Maker00033870 Lcy13g1845 652150

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1845 705 Pfam PPR repeat family 267 314 IPR002885 -
Lcy13g1845 705 Pfam PPR repeat family 64 111 IPR002885 -
Lcy13g1845 705 Pfam PPR repeat family 472 518 IPR002885 -
Lcy13g1845 705 Pfam E motif 590 650 IPR046848 -
Lcy13g1845 705 Gene3D Tetratricopeptide repeat domain 16 121 IPR011990 GO:0005515(InterPro)
Lcy13g1845 705 Gene3D Tetratricopeptide repeat domain 214 324 IPR011990 GO:0005515(InterPro)
Lcy13g1845 705 Gene3D Tetratricopeptide repeat domain 325 429 IPR011990 GO:0005515(InterPro)
Lcy13g1845 705 PANTHER OS07G0578800 PROTEIN-RELATED 321 671 IPR045215 GO:0003723(InterPro)|GO:0003723(PANTHER)|GO:0009451(InterPro)|GO:0009451(PANTHER)|GO:0043231(PANTHER)
Lcy13g1845 705 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 119 215 - -
Lcy13g1845 705 Gene3D Tetratricopeptide repeat domain 446 671 IPR011990 GO:0005515(InterPro)
Lcy13g1845 705 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 471 505 IPR002885 -
Lcy13g1845 705 NCBIfam pentatricopeptide repeat 66 100 IPR002885 -
Lcy13g1845 705 NCBIfam pentatricopeptide repeat 473 506 IPR002885 -
Lcy13g1845 705 NCBIfam pentatricopeptide repeat 269 302 IPR002885 -
Lcy13g1845 705 Pfam PPR repeat 238 260 IPR002885 -
Lcy13g1845 705 Pfam PPR repeat 167 196 IPR002885 -
Lcy13g1845 705 Pfam PPR repeat 372 394 IPR002885 -
Lcy13g1845 705 Pfam PPR repeat 549 569 IPR002885 -
Lcy13g1845 705 Pfam PPR repeat 36 61 IPR002885 -
Lcy13g1845 705 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 64 98 IPR002885 -
Lcy13g1845 705 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Lcy13g1845 705 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 199 IPR002885 -
Lcy13g1845 705 FunFam pentatricopeptide repeat-containing protein At2g33680 444 670 - -
Lcy13g1845 705 FunFam Pentatricopeptide repeat-containing protein At3g26782, mitochondrial 322 429 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1845 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1845 Lcy-Chr13:37399758 Lcy3g1604 Lcy-Chr3:43171792 6.54E-144 dispersed
Lcy13g1845 Lcy-Chr13:37399758 Lcy8g0123 Lcy-Chr8:2992466 4.67E-137 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g612 . . . . . . . . Cmo05g00344 . . Cma05g00341 . . . . . Bhi04g00070 . . . . . Lcy13g1845 . . . . . . . . . . Cone20ag0308 . . . Cme03g01561 . . . . . . . . . . . . . . Car05g00286 Cpe11g00286 . . . . . . . . Cla08g01378 . . . . . . Lsi08g01262 . Chy03g01071 .