Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1849 ATGGCTTCGAAGCTTTGTGACTCGTGTAAGTCGGCCACGGCCACTCTCTTCTGCCGAGCTGACTCTGCCTTCCTCTGCGTTGGCTGTGACTCCAAAGTTCACGCCGCCAACAAGCTCGCTTCTCGCCATGCTCGCGTTTGGGTCTGTGAAGTCTGCGAGCAAGCTCCTGCTCATGTCACCTGCAAGGCCGACGCCGCCGCTCTCTGCCTCTCTTGCGACCACGATATCCACTCTGTTAATCCTCTCGCTCGCCGTCACGAGCGAGTTCCAGTCACGCCCTTCTACGACTCCTCCTCCAACACATCCAACTCACTCGCAGTTAAGCCTGGCGCTGCAATCAACTTCCTCGACGACCGTTACTTCTCTGATGTCGACGCCGACGCCGCCGATGTTAGCAGAGAGGAGGCCGAGGCTGCTTCCTGGCTTCTTCCGAACCCTAACCCTAAGGCAGCCGAAAGTCCAGATCTGAACTCGGGGAAGTTCGAGTTTCCAGAAATGGATCCTTACCTAGATCTGGATTACGGCCATGTGGATCCGAAATTAGAAGCGCAAGAGCAGAACAGCTGCGGCGCCGATGGAGTCGTTCCGGTTCAGAGTAAAGGCGTCCATCTCTCGTCGGTGAACGACCGCTGCTTCGGCATCGACTTCCCCGGCGCCAAATCGTTCCCGTACGGTTACAATCCTCAGTCAATCAGTCACAGTGTATCATCCTCGTCGATCGAGGTCGGAGTTGTCCCGGACGGCAACGCGATGACGGAGATATCGAATCCGTACACGAAGCCGTCGACGGAATCGAATGTTCAACCGCTGCAAATCTCGCCGGCGGATCGAGAGGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACAGAAAGTTCGAGAAGACGATCCGATACGCATCTCGTAAGGCGTACGCTGAGACGAGACCGCGAATCAAAGGACGGTTCGCCAAACGGACGGACATCGAACTTGAGGTCGACCGAGTGAGTGGATACGGCGTCGTTCCGTCGTTCTAA 1017 56.34 MASKLCDSCKSATATLFCRADSAFLCVGCDSKVHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCLSCDHDIHSVNPLARRHERVPVTPFYDSSSNTSNSLAVKPGAAINFLDDRYFSDVDADAADVSREEAEAASWLLPNPNPKAAESPDLNSGKFEFPEMDPYLDLDYGHVDPKLEAQEQNSCGADGVVPVQSKGVHLSSVNDRCFGIDFPGAKSFPYGYNPQSISHSVSSSSIEVGVVPDGNAMTEISNPYTKPSTESNVQPLQISPADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDIELEVDRVSGYGVVPSF 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 37431636 37433828 - Maker00034068 Lcy13g1849 652154

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1849 338 ProSiteProfiles CCT domain profile. 277 319 IPR010402 GO:0005515(InterPro)
Lcy13g1849 338 CDD Bbox1_BBX-like 48 91 IPR049808 -
Lcy13g1849 338 CDD Bbox1_BBX-like 5 48 IPR049808 -
Lcy13g1849 338 Pfam CCT motif 277 319 IPR010402 GO:0005515(InterPro)
Lcy13g1849 338 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270(InterPro)
Lcy13g1849 338 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 4 321 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(InterPro)|GO:0009909(PANTHER)
Lcy13g1849 338 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270(InterPro)
Lcy13g1849 338 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270(InterPro)
Lcy13g1849 338 MobiDBLite consensus disorder prediction 143 162 - -
Lcy13g1849 338 SMART bboxneu5 49 91 IPR000315 GO:0008270(InterPro)
Lcy13g1849 338 SMART bboxneu5 1 48 IPR000315 GO:0008270(InterPro)
Lcy13g1849 338 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1849 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0944 Lcy-Chr10:30068882 Lcy13g1849 Lcy-Chr13:37431636 5.95E-09 dispersed
Lcy13g1849 Lcy-Chr13:37431636 Lcy4g1662 Lcy-Chr4:41924170 3.83E-45 dispersed
Lcy13g1849 Lcy-Chr13:37431636 Lcy2g0242 Lcy-Chr2:1914128 2.73E-78 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g625 . . . . Bpe02g01272 . . . Cmo05g00340 Cmo12g00329 . Cma05g00338 . . Sed11g1127 Cpe07g00334 . Bhi04g00075 Tan02g2785 Cmetu03g0258 . Hepe10g0202 . Lcy13g1849 . . . . . . . Cone4ag1724 Cone7ag1644 . . . . . Cme03g01557 . . . . . . Bma01g01259 . . . . . Cma12g00377 . Car05g00282 Cpe11g00283 . . . . . . . . Cla08g01382 Cam08g1853 Cec08g1431 Cco08g1564 Clacu08g1548 . Cre08g1331 Lsi08g01266 . Chy03g01067 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy13g1849 . 1 339 C2C2-CO-like Transcription Factor Family AT5G24930 60.8 3.5e-82 302.8
Lcy2g0242 . 20 376 C2C2-CO-like Transcription Factor Family AT5G24930 50.7 4.3e-56 216.1
Lcy2g0242 . 5 376 C2C2-CO-like Transcription Factor Family AT5G57660 51.2 9.0e-67 251.5
Lcy8g1342 . 1 421 C2C2-CO-like Transcription Factor Family AT3G07650 58.2 1.4e-99 360.5
Lcy4g0405 . 1 409 C2C2-CO-like Transcription Factor Family AT3G07650 55.5 2.3e-89 326.6
Lcy8g1342 . 1 421 C2C2-CO-like Transcription Factor Family AT5G48250 56.7 1.6e-93 340.5
Lcy4g0405 . 1 409 C2C2-CO-like Transcription Factor Family AT5G48250 55.8 1.8e-86 317.0
Lcy8g1342 . 1 421 C2C2-CO-like Transcription Factor Family AT5G48250 56.7 1.6e-93 340.5
Lcy4g0405 . 1 409 C2C2-CO-like Transcription Factor Family AT5G48250 55.8 1.8e-86 317.0
Lcy3g0981 . 1 199 C2C2-CO-like Transcription Factor Family AT1G75540 58.3 9.0e-53 204.9
Lcy8g1159 . 1 204 C2C2-CO-like Transcription Factor Family AT1G75540 52.6 3.3e-47 186.4
Lcy1g0650 . 1 132 C2C2-CO-like Transcription Factor Family AT2G21320 70.5 3.7e-50 195.3
Lcy6g0892 . 1 200 C2C2-CO-like Transcription Factor Family AT2G21320 51.7 3.6e-45 178.7
Lcy1g0650 . 1 164 C2C2-CO-like Transcription Factor Family AT4G38960 59.1 7.5e-49 191.0
Lcy8g1175 . 1 216 C2C2-CO-like Transcription Factor Family AT4G38960 50.5 4.1e-47 185.3
Lcy6g0892 . 1 199 C2C2-CO-like Transcription Factor Family AT4G38960 53.9 5.4e-47 184.9
Lcy3g0981 . 1 197 C2C2-CO-like Transcription Factor Family AT4G39070 59.9 7.1e-55 211.5
Lcy13g1934 . 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 52.6 7.1e-47 184.9
Lcy8g1159 . 1 197 C2C2-CO-like Transcription Factor Family AT4G39070 54.1 1.2e-43 174.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010751 0 1 0 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 2 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19422 None None None None Lcy TF