Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1849 ATGGCTTCGAAGCTTTGTGACTCGTGTAAGTCGGCCACGGCCACTCTCTTCTGCCGAGCTGACTCTGCCTTCCTCTGCGTTGGCTGTGACTCCAAAGTTCACGCCGCCAACAAGCTCGCTTCTCGCCATGCTCGCGTTTGGGTCTGTGAAGTCTGCGAGCAAGCTCCTGCTCATGTCACCTGCAAGGCCGACGCCGCCGCTCTCTGCCTCTCTTGCGACCACGATATCCACTCTGTTAATCCTCTCGCTCGCCGTCACGAGCGAGTTCCAGTCACGCCCTTCTACGACTCCTCCTCCAACACATCCAACTCACTCGCAGTTAAGCCTGGCGCTGCAATCAACTTCCTCGACGACCGTTACTTCTCTGATGTCGACGCCGACGCCGCCGATGTTAGCAGAGAGGAGGCCGAGGCTGCTTCCTGGCTTCTTCCGAACCCTAACCCTAAGGCAGCCGAAAGTCCAGATCTGAACTCGGGGAAGTTCGAGTTTCCAGAAATGGATCCTTACCTAGATCTGGATTACGGCCATGTGGATCCGAAATTAGAAGCGCAAGAGCAGAACAGCTGCGGCGCCGATGGAGTCGTTCCGGTTCAGAGTAAAGGCGTCCATCTCTCGTCGGTGAACGACCGCTGCTTCGGCATCGACTTCCCCGGCGCCAAATCGTTCCCGTACGGTTACAATCCTCAGTCAATCAGTCACAGTGTATCATCCTCGTCGATCGAGGTCGGAGTTGTCCCGGACGGCAACGCGATGACGGAGATATCGAATCCGTACACGAAGCCGTCGACGGAATCGAATGTTCAACCGCTGCAAATCTCGCCGGCGGATCGAGAGGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACAGAAAGTTCGAGAAGACGATCCGATACGCATCTCGTAAGGCGTACGCTGAGACGAGACCGCGAATCAAAGGACGGTTCGCCAAACGGACGGACATCGAACTTGAGGTCGACCGAGTGAGTGGATACGGCGTCGTTCCGTCGTTCTAA 1017 56.34 MASKLCDSCKSATATLFCRADSAFLCVGCDSKVHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCLSCDHDIHSVNPLARRHERVPVTPFYDSSSNTSNSLAVKPGAAINFLDDRYFSDVDADAADVSREEAEAASWLLPNPNPKAAESPDLNSGKFEFPEMDPYLDLDYGHVDPKLEAQEQNSCGADGVVPVQSKGVHLSSVNDRCFGIDFPGAKSFPYGYNPQSISHSVSSSSIEVGVVPDGNAMTEISNPYTKPSTESNVQPLQISPADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDIELEVDRVSGYGVVPSF 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 37431636 37433828 - Maker00034068 Lcy13g1849 652154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1849 338 ProSiteProfiles CCT domain profile. 277 319 IPR010402 GO:0005515(InterPro)
Lcy13g1849 338 CDD Bbox1_BBX-like 48 91 IPR049808 -
Lcy13g1849 338 CDD Bbox1_BBX-like 5 48 IPR049808 -
Lcy13g1849 338 Pfam CCT motif 277 319 IPR010402 GO:0005515(InterPro)
Lcy13g1849 338 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270(InterPro)
Lcy13g1849 338 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 4 321 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(InterPro)|GO:0009909(PANTHER)
Lcy13g1849 338 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270(InterPro)
Lcy13g1849 338 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270(InterPro)
Lcy13g1849 338 MobiDBLite consensus disorder prediction 143 162 - -
Lcy13g1849 338 SMART bboxneu5 49 91 IPR000315 GO:0008270(InterPro)
Lcy13g1849 338 SMART bboxneu5 1 48 IPR000315 GO:0008270(InterPro)
Lcy13g1849 338 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0944 Lcy-Chr10:30068882 Lcy13g1849 Lcy-Chr13:37431636 5.95E-09 dispersed
Lcy13g1849 Lcy-Chr13:37431636 Lcy4g1662 Lcy-Chr4:41924170 3.83E-45 dispersed
Lcy13g1849 Lcy-Chr13:37431636 Lcy2g0242 Lcy-Chr2:1914128 2.73E-78 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19422 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1849 - - - 0.0