Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy13g1855 | ATGAGGAGAAGAAAGGGTGTGAAAGATAGATATGGGGTGATGTTGATGCTCTTGCTAGCGGCCGTGGCGGCAACGACGGCGGCACAGAAGGAGGAGGAGAAGACGGCGGCGACGGTGAAAGTAAAGGTGGGTGTAGTTTTGACTTCGGATGGTTTTGGGAAGATGGGTTTCAGTTGCATCTCAATGGCTCTCTCAGATTTCTATGATTCTCGGAGTTATTACAAGACTAGAGTGATTCTCAACACCAGTGACTCCAATGGGACGGTTGTTGCTGCCGCTGCGGCAGCTCTAGATTTGATAAAGAAGGTGGAAGTGCAAGCCATTCTAGGCCCAACAACCTCCATGGAAGCCAGCTTCATGATCGATGTTGGAGACAAAGCACACGTTCCCATCATCTCATTTTCAGCCACACGACCTTCTCTCACATCCCACCGCAGCCCTTTCTTCTTTCGAGTCGCCCAAGACGATTCCACTCAGGTGAAAGCCATTGGAGCCATCGTCAAGACCTTCAAATGGCGACAGGTCGTCCCCATCTACGTCGACAACGAGTTCGGCGACGGAATCATCCCTTACCTCGTCGATGCTCTGCAAGAGGTCAACGCTCACGTGCCCTACCAAAGCATCATCTCTCCGACCGCCACCGACGACCAGATCACCGGTGAACTCTACAAGTTGATGACAATGCAGACCAGAGTTTTCGTAGTGCACATGACATCTCCCCTTGCAGCTCGAATCTTCACCAAGGCCAAAGAAATTGGAATGATGAAGCGAGGCTATGTTTGGATAACGACGGATGGCATCACAAACGGGTTGGATTCAGCACGAGCTTCGACTTTGGAGTCCATGCAAGGAGTTCTAGGAATAAAAACATACGTCCCACGAACTAAAAGGCTCGAGACCTTCGAACATGAATGGCGTAAGAGATTTCGAAGGTATTATCCAACCGTAGAAGACAAAGACATTCCAAAGCTGAACGTGTTTGGGTTATGGGCTTACGACGCTGCTTGGGCATTGGCCATCGCAGTGGAGAAGGCTGGCACCGACAACCTTCGGTACAGCCCAGCCAACGTCACAGCCTCGAAAATGAACTCGTCGAACTATCTATACAGCCTCGGCGTCAATCAAAATGGGTTGAAGCTGCAAGACGCCTTCTCAAATGTGACATTCAAGGGCATGGCCGGTGAGTTTAGTCTCGCGAACGGGCAACTGCAGTCGTGGGTTTTCGAGATAGTGAACGTGATCGGCAACGGAAGAAGAAACGTGGGGTTCTGGTCGCCGGAAACTGGGCTGACGAGGAAATTGGAAGATTCAGAAAGAGCGAGTGGGCTGAAGTCGATCATTTGGCCGGGAGATCCGGGCTATCCTCCAAAAGGGTGGGAGATTCCGACGAACGAGAAGAAGTTGAGAGTGGTGGTTCCGGTAAAGGATGGATTTTGGGAGTTTGTGAGTGTGGAGCGTGATCCCGAAACAAACGCAACGAAAGTGAGTGGATATTGCATAGATGTGTTCAAAGCTGTGATCGAAGCGTTGCCTTATGCCGTTGCTTATGAGCTCATTCCTTTCCACAAATCCGCTGCAGAACCAGGTGGCACCTACAATGACTTGGTCGATCAGATCACTTATGGGAAGTTTGATGCTATTGCGGGAGACCTGACGATCCGAGCGAACAGGTCAAGGTACATAGACTACACATTGCCGTTCACAGATTCTGGGGTGTCGTTGGTTGTGGCGATGAAGGGCAGCAAGAACACGAATGCATGGGTGTTCTTGAAGCCTCTTACATGGAGGCTTTGGCTGCTGACTGCGTTCTTCTTCATCATCGTGGCAGCTGTTGTTTGGATCCTGGAACATCGAGTCAATCAAGACTTCAGTGGACATCCTTTTGATCAGATCTGCACCAGCCTTTGGTACTCTTTCTCCACCATGGTTTTTGCCCATCGGGAGATTACGTTGAACAACTGGACTCGACTTGTGGTGATAATATGGTTGTTTGTGGTTCTGATCATTACACAGAGTTACACTGCAAGTTTGGCCTCACTTTTGACGGTTCAAGAGTTTAAACCCACTGTAACTGATATCAATCAACTGGTTCAAAATAGAGAGTTCGTGGGACACAAGGTTGGTTCTTTCATCCACGAGATCCTCCTCTCGTTGGGCTTCAATGAATCCCAACTCAAAACTTACCGCACCACTGAAGAAATGCACGAACTTTTATCCAAAGGAAGCGCCAATAATGGCATTTCTGCTGCCATGGATGAAACCCCTTACATCAAGTTGTTCCTCGCCAAGTACTGCTCACAATATACCACCACTGGACCCACCTACAAAGCTGATGGCTTTGGTTTTGTAAGTTCCTCCTTTTCGAAGAATATATCAAATTCTAAGTTTAATCCCACAAAGTTTTGA | 2406 | 48.79 | MRRRKGVKDRYGVMLMLLLAAVAATTAAQKEEEKTAATVKVKVGVVLTSDGFGKMGFSCISMALSDFYDSRSYYKTRVILNTSDSNGTVVAAAAAALDLIKKVEVQAILGPTTSMEASFMIDVGDKAHVPIISFSATRPSLTSHRSPFFFRVAQDDSTQVKAIGAIVKTFKWRQVVPIYVDNEFGDGIIPYLVDALQEVNAHVPYQSIISPTATDDQITGELYKLMTMQTRVFVVHMTSPLAARIFTKAKEIGMMKRGYVWITTDGITNGLDSARASTLESMQGVLGIKTYVPRTKRLETFEHEWRKRFRRYYPTVEDKDIPKLNVFGLWAYDAAWALAIAVEKAGTDNLRYSPANVTASKMNSSNYLYSLGVNQNGLKLQDAFSNVTFKGMAGEFSLANGQLQSWVFEIVNVIGNGRRNVGFWSPETGLTRKLEDSERASGLKSIIWPGDPGYPPKGWEIPTNEKKLRVVVPVKDGFWEFVSVERDPETNATKVSGYCIDVFKAVIEALPYAVAYELIPFHKSAAEPGGTYNDLVDQITYGKFDAIAGDLTIRANRSRYIDYTLPFTDSGVSLVVAMKGSKNTNAWVFLKPLTWRLWLLTAFFFIIVAAVVWILEHRVNQDFSGHPFDQICTSLWYSFSTMVFAHREITLNNWTRLVVIIWLFVVLIITQSYTASLASLLTVQEFKPTVTDINQLVQNREFVGHKVGSFIHEILLSLGFNESQLKTYRTTEEMHELLSKGSANNGISAAMDETPYIKLFLAKYCSQYTTTGPTYKADGFGFVSSSFSKNISNSKFNPTKF | 801 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 37496920 | 37501260 | + | Maker00034220 | Lcy13g1855 | 652160 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy13g1855 | 801 | Pfam | Ligated ion channel L-glutamate- and glycine-binding site | 483 | 577 | IPR019594 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
Lcy13g1855 | 801 | SUPERFAMILY | Voltage-gated potassium channels | 593 | 681 | - | - | |
Lcy13g1855 | 801 | Gene3D | - | 467 | 585 | - | - | |
Lcy13g1855 | 801 | SUPERFAMILY | Periplasmic binding protein-like I | 41 | 460 | IPR028082 | - | |
Lcy13g1855 | 801 | Pfam | Receptor family ligand binding region | 60 | 415 | IPR001828 | - | |
Lcy13g1855 | 801 | PANTHER | OS06G0188250 PROTEIN | 27 | 496 | IPR015683 | - | |
Lcy13g1855 | 801 | FunFam | Glutamate receptor | 161 | 319 | - | - | |
Lcy13g1855 | 801 | FunFam | Glutamate receptor | 467 | 586 | - | - | |
Lcy13g1855 | 801 | FunFam | Glutamate receptor | 586 | 716 | - | - | |
Lcy13g1855 | 801 | Pfam | Ligand-gated ion channel | 594 | 743 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
Lcy13g1855 | 801 | Gene3D | - | 586 | 724 | - | - | |
Lcy13g1855 | 801 | FunFam | Glutamate receptor | 732 | 780 | - | - | |
Lcy13g1855 | 801 | PIRSF | IGluLR_plant | 9 | 793 | IPR017103 | - | |
Lcy13g1855 | 801 | Gene3D | - | 157 | 321 | - | - | |
Lcy13g1855 | 801 | Gene3D | - | 355 | 466 | - | - | |
Lcy13g1855 | 801 | SUPERFAMILY | Periplasmic binding protein-like II | 445 | 783 | - | - | |
Lcy13g1855 | 801 | CDD | GluR_Plant | 466 | 783 | - | - | |
Lcy13g1855 | 801 | CDD | PBP1_GABAb_receptor_plant | 42 | 434 | IPR044440 | - | |
Lcy13g1855 | 801 | SMART | GluR_14 | 467 | 798 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy13g1855 | Lcy-Chr13:37496920 | Lcy13g1866 | Lcy-Chr13:37547779 | 0 | dispersed | |
Lcy13g1853 | Lcy-Chr13:37477830 | Lcy13g1855 | Lcy-Chr13:37496920 | 9.73E-252 | proximal | |
Lcy13g1854 | Lcy-Chr13:37487571 | Lcy13g1855 | Lcy-Chr13:37496920 | 1.39E-105 | tandem | |
Lcy13g1855 | Lcy-Chr13:37496920 | Lcy13g1856 | Lcy-Chr13:37505694 | 0 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy13g1855 | K05387 | - | csv:101204040 | 1165.21 |