Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1855 ATGAGGAGAAGAAAGGGTGTGAAAGATAGATATGGGGTGATGTTGATGCTCTTGCTAGCGGCCGTGGCGGCAACGACGGCGGCACAGAAGGAGGAGGAGAAGACGGCGGCGACGGTGAAAGTAAAGGTGGGTGTAGTTTTGACTTCGGATGGTTTTGGGAAGATGGGTTTCAGTTGCATCTCAATGGCTCTCTCAGATTTCTATGATTCTCGGAGTTATTACAAGACTAGAGTGATTCTCAACACCAGTGACTCCAATGGGACGGTTGTTGCTGCCGCTGCGGCAGCTCTAGATTTGATAAAGAAGGTGGAAGTGCAAGCCATTCTAGGCCCAACAACCTCCATGGAAGCCAGCTTCATGATCGATGTTGGAGACAAAGCACACGTTCCCATCATCTCATTTTCAGCCACACGACCTTCTCTCACATCCCACCGCAGCCCTTTCTTCTTTCGAGTCGCCCAAGACGATTCCACTCAGGTGAAAGCCATTGGAGCCATCGTCAAGACCTTCAAATGGCGACAGGTCGTCCCCATCTACGTCGACAACGAGTTCGGCGACGGAATCATCCCTTACCTCGTCGATGCTCTGCAAGAGGTCAACGCTCACGTGCCCTACCAAAGCATCATCTCTCCGACCGCCACCGACGACCAGATCACCGGTGAACTCTACAAGTTGATGACAATGCAGACCAGAGTTTTCGTAGTGCACATGACATCTCCCCTTGCAGCTCGAATCTTCACCAAGGCCAAAGAAATTGGAATGATGAAGCGAGGCTATGTTTGGATAACGACGGATGGCATCACAAACGGGTTGGATTCAGCACGAGCTTCGACTTTGGAGTCCATGCAAGGAGTTCTAGGAATAAAAACATACGTCCCACGAACTAAAAGGCTCGAGACCTTCGAACATGAATGGCGTAAGAGATTTCGAAGGTATTATCCAACCGTAGAAGACAAAGACATTCCAAAGCTGAACGTGTTTGGGTTATGGGCTTACGACGCTGCTTGGGCATTGGCCATCGCAGTGGAGAAGGCTGGCACCGACAACCTTCGGTACAGCCCAGCCAACGTCACAGCCTCGAAAATGAACTCGTCGAACTATCTATACAGCCTCGGCGTCAATCAAAATGGGTTGAAGCTGCAAGACGCCTTCTCAAATGTGACATTCAAGGGCATGGCCGGTGAGTTTAGTCTCGCGAACGGGCAACTGCAGTCGTGGGTTTTCGAGATAGTGAACGTGATCGGCAACGGAAGAAGAAACGTGGGGTTCTGGTCGCCGGAAACTGGGCTGACGAGGAAATTGGAAGATTCAGAAAGAGCGAGTGGGCTGAAGTCGATCATTTGGCCGGGAGATCCGGGCTATCCTCCAAAAGGGTGGGAGATTCCGACGAACGAGAAGAAGTTGAGAGTGGTGGTTCCGGTAAAGGATGGATTTTGGGAGTTTGTGAGTGTGGAGCGTGATCCCGAAACAAACGCAACGAAAGTGAGTGGATATTGCATAGATGTGTTCAAAGCTGTGATCGAAGCGTTGCCTTATGCCGTTGCTTATGAGCTCATTCCTTTCCACAAATCCGCTGCAGAACCAGGTGGCACCTACAATGACTTGGTCGATCAGATCACTTATGGGAAGTTTGATGCTATTGCGGGAGACCTGACGATCCGAGCGAACAGGTCAAGGTACATAGACTACACATTGCCGTTCACAGATTCTGGGGTGTCGTTGGTTGTGGCGATGAAGGGCAGCAAGAACACGAATGCATGGGTGTTCTTGAAGCCTCTTACATGGAGGCTTTGGCTGCTGACTGCGTTCTTCTTCATCATCGTGGCAGCTGTTGTTTGGATCCTGGAACATCGAGTCAATCAAGACTTCAGTGGACATCCTTTTGATCAGATCTGCACCAGCCTTTGGTACTCTTTCTCCACCATGGTTTTTGCCCATCGGGAGATTACGTTGAACAACTGGACTCGACTTGTGGTGATAATATGGTTGTTTGTGGTTCTGATCATTACACAGAGTTACACTGCAAGTTTGGCCTCACTTTTGACGGTTCAAGAGTTTAAACCCACTGTAACTGATATCAATCAACTGGTTCAAAATAGAGAGTTCGTGGGACACAAGGTTGGTTCTTTCATCCACGAGATCCTCCTCTCGTTGGGCTTCAATGAATCCCAACTCAAAACTTACCGCACCACTGAAGAAATGCACGAACTTTTATCCAAAGGAAGCGCCAATAATGGCATTTCTGCTGCCATGGATGAAACCCCTTACATCAAGTTGTTCCTCGCCAAGTACTGCTCACAATATACCACCACTGGACCCACCTACAAAGCTGATGGCTTTGGTTTTGTAAGTTCCTCCTTTTCGAAGAATATATCAAATTCTAAGTTTAATCCCACAAAGTTTTGA 2406 48.79 MRRRKGVKDRYGVMLMLLLAAVAATTAAQKEEEKTAATVKVKVGVVLTSDGFGKMGFSCISMALSDFYDSRSYYKTRVILNTSDSNGTVVAAAAAALDLIKKVEVQAILGPTTSMEASFMIDVGDKAHVPIISFSATRPSLTSHRSPFFFRVAQDDSTQVKAIGAIVKTFKWRQVVPIYVDNEFGDGIIPYLVDALQEVNAHVPYQSIISPTATDDQITGELYKLMTMQTRVFVVHMTSPLAARIFTKAKEIGMMKRGYVWITTDGITNGLDSARASTLESMQGVLGIKTYVPRTKRLETFEHEWRKRFRRYYPTVEDKDIPKLNVFGLWAYDAAWALAIAVEKAGTDNLRYSPANVTASKMNSSNYLYSLGVNQNGLKLQDAFSNVTFKGMAGEFSLANGQLQSWVFEIVNVIGNGRRNVGFWSPETGLTRKLEDSERASGLKSIIWPGDPGYPPKGWEIPTNEKKLRVVVPVKDGFWEFVSVERDPETNATKVSGYCIDVFKAVIEALPYAVAYELIPFHKSAAEPGGTYNDLVDQITYGKFDAIAGDLTIRANRSRYIDYTLPFTDSGVSLVVAMKGSKNTNAWVFLKPLTWRLWLLTAFFFIIVAAVVWILEHRVNQDFSGHPFDQICTSLWYSFSTMVFAHREITLNNWTRLVVIIWLFVVLIITQSYTASLASLLTVQEFKPTVTDINQLVQNREFVGHKVGSFIHEILLSLGFNESQLKTYRTTEEMHELLSKGSANNGISAAMDETPYIKLFLAKYCSQYTTTGPTYKADGFGFVSSSFSKNISNSKFNPTKF 801
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 37496920 37501260 + Maker00034220 Lcy13g1855 652160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1855 801 Pfam Ligated ion channel L-glutamate- and glycine-binding site 483 577 IPR019594 GO:0015276(InterPro)|GO:0016020(InterPro)
Lcy13g1855 801 SUPERFAMILY Voltage-gated potassium channels 593 681 - -
Lcy13g1855 801 Gene3D - 467 585 - -
Lcy13g1855 801 SUPERFAMILY Periplasmic binding protein-like I 41 460 IPR028082 -
Lcy13g1855 801 Pfam Receptor family ligand binding region 60 415 IPR001828 -
Lcy13g1855 801 PANTHER OS06G0188250 PROTEIN 27 496 IPR015683 -
Lcy13g1855 801 FunFam Glutamate receptor 161 319 - -
Lcy13g1855 801 FunFam Glutamate receptor 467 586 - -
Lcy13g1855 801 FunFam Glutamate receptor 586 716 - -
Lcy13g1855 801 Pfam Ligand-gated ion channel 594 743 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Lcy13g1855 801 Gene3D - 586 724 - -
Lcy13g1855 801 FunFam Glutamate receptor 732 780 - -
Lcy13g1855 801 PIRSF IGluLR_plant 9 793 IPR017103 -
Lcy13g1855 801 Gene3D - 157 321 - -
Lcy13g1855 801 Gene3D - 355 466 - -
Lcy13g1855 801 SUPERFAMILY Periplasmic binding protein-like II 445 783 - -
Lcy13g1855 801 CDD GluR_Plant 466 783 - -
Lcy13g1855 801 CDD PBP1_GABAb_receptor_plant 42 434 IPR044440 -
Lcy13g1855 801 SMART GluR_14 467 798 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1855 Lcy-Chr13:37496920 Lcy13g1866 Lcy-Chr13:37547779 0 dispersed
Lcy13g1853 Lcy-Chr13:37477830 Lcy13g1855 Lcy-Chr13:37496920 9.73E-252 proximal
Lcy13g1854 Lcy-Chr13:37487571 Lcy13g1855 Lcy-Chr13:37496920 1.39E-105 tandem
Lcy13g1855 Lcy-Chr13:37496920 Lcy13g1856 Lcy-Chr13:37505694 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1855 K05387 - csv:101204040 1165.21