Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy13g1856 | ATGTTGCTCACGGCGACGGTGCCGGTGACGGCGCAGGAGGAGGAGGCGGCGGCGGCGGCGAAAGTGAAAGTGAAGGTGGGTGTGGTTTTGGATTTGAATTTTGTTGTTGGGCAAATGGGTCTGAGTTGTATTTCAATGGCTCTTGCTGATTTCTATTCTTCTCGAAGTTATTACGAGACTAGAGTGATTCTCAACACCATTGATTCCAATAACACTGTTGTTGATGCAGCTGCTGCAGCCGTAGAATTGATAAAGAAAGAGGAAGTTCAAGCCATTATAGGCCCAACAAGCTCCATGCAAGCCAACTTCATTATCGGCCTTGGAGACAAAGCACACGTTCCCATCATCTCATTTTCAGCCACACGACCTTCCCTCACATCCCACCGCAGCTCCTTCTTCTTCCGAGTTGCCCAGAATGATTCCTCCCAAGTCAAAGCCATTGGAGCCATTGTCAAGGCCTTCAAATGGCCACAGGTCGTCCCCATCTACAGCGACAACGAGTTCGGCGATGGCATCATCCCTTACCTCATCGATGCTCTGCAAGAAGTCGACGCCCACGTGCCCTACCAGAGCATCATCTCCCCGACCGCCACCGATGCCCAAATCTCCAACGAGCTTCGCAAGCTGATGACGATGCCGACCAGAGTGTTCGTCGTGCACATGTTATCTCGCCATGCTTCTCGACTCTTCACAAAGGCTAAAGAGATTGGAATGATGAAGCGAGGCTACGTTTGGATAATCACAGACGCCATAGCAAACGAATTGGACTTATTAGAACCTTCGACTTTCGAGGCGATGCAAGGAGTTGTGGGAATAAAAACTTACGTCCCAAGAACCAAAAGGCTCGACTCCTTAAAACAAGATTGGCGGAAGAGATTTCGAAGGTATTTTCCAACCATAGAAGACATTCCCGAGCTGGACGCTTTTGGGTTATGGGCTTACGACGCCGCTTGGGCGCTGGCCATCTCCGTGGAAAAGGCCGGCACCGACAACCTACGATACAGCGCGGCCGACGCCGAGAAAACAAACTCATCAAACTGTCTATTCAGCCTTGGGGTCAATCAAAATGGTCCGAAGCTGCGAGATGCCTTCTCAAACGTCACGTTCAGGGGCTTGGCCGGTGAGTTCAGTCTAATCAATGGACAGTTACAGTCGTCGGTGTTCGAGGTAGTGAATCTAATCGGAAATGGTGGGAGAAACGTTGGGTTTTGGTCAGCAGAAACTGGGTTGACGAGGAAGCTGCAAGACTCGGCAAGAGCAAAGGGGTTGAGATCGATAATCTGGCCGGGAGAGCCGATTTCTTCTCCGAAAGGGTGGGAGATTCCGACGAAGGGGAAGAAGTTGAGAGTTGGGGTTCCAGTGAAGGATGGATTCTGGGAGTTCGTGAACGTGGTCCGTGATTCCAAAACAAATGCAACAATTGACGTAAGAGGATATTGCATAGACGTGTTCAAGGCCGTGATCGAAGCATTGCCTTATAAAGTTGCTTACGAGTTCATTCCTGCGGAGAAATCCAATGCAGTCCCAGGTGGCAGCTACAATGAGCTGACTTATCAACTCTTTCTTGGGAAGTTTGATGCTGTGGTGGGAGACATAACGATTCGAGCGAATAGGTCATCGTACATAGACTACACGTTGCCATTCACAAAATCCGGGGTGGCGATGGTTGTGCCGATGAGGAGCAACAAGAATAACAATAATGCGTGGGTGTTCTTAAAGCCATTAACATGGAATCTATGGATGCTCACAGCCATCTTCTTCCTCATTGTGGCGTTTGTTGTTTGGATCCTAGAACATCGTGTCAACGAAGACTTTCGTGGACAACCTTTGGATCAGATCTGTACCAGTCTCTGGTACTCTTTTTCCACCATGGTTTTTGCCCATAGGGAGGTTACGTTGAACAATTGGACAAGACTTGTGGTGATAATATGGCTATTTGTGGTTCTTATCATCACACAAAGTTACACTGCAAGTTTGGCCTCACTTTTGACGGTTCAAGAGCTGAAACCTACTGTAACTGATATCAATCAACTCCTTAAAAATGGAGAGAACATTGGATATCAGGGAGGTTCTTTCGTGTACGAGATTCTCAAGTCGCTGAAATTCCATGATTCCCAACTTAAAACTTACGAGTCTGCAGAAGAAATGCACCAACTTTTCACCAAAGGAAGCCTCAACGGCGGAATTTCTGCTGCAGTGGATGAAATCCCTTACATTGATCTGTTTCTCGCTCAGTACTGCTCACAATACACCACCATCGAACCCACTTATAAAGCCGATGGCTTTGGTTCGCCTTTAGTACCTGATATCTCCAGAACGATCTTGGAAGTGACAGAAAGCGATAGAATGAGAGAGATCGAAAACACATGGTTCAAACACTTGAGAGAATGTTCGGCTTCGAAAGTGGCCGAGTTGTCTTCCACCCGCTTGAGCATCAACAGCTTCTGGGGACTTTTCCTGATCACCGGCGTTGTTTCCTTCTTTTCTGTAGCTGTTTATATCGGAAAATTTCTCTACGACGAACGGCCGCATTGGCGGAACGTAAACGGTTCCAACTGGAATAGGTTCAAGAATTTGGCCGGCAAGTTCTTGAAGAGAGATCCCAGAGCTCACCCACTGAGGAGAAGGATATTCATTAATGGCGTTCCTGTTAATCCAGAAGCCGTAGTTGTTAGAGATGAAGATGATCGAGCAGGTTGA | 2700 | 47.78 | MLLTATVPVTAQEEEAAAAAKVKVKVGVVLDLNFVVGQMGLSCISMALADFYSSRSYYETRVILNTIDSNNTVVDAAAAAVELIKKEEVQAIIGPTSSMQANFIIGLGDKAHVPIISFSATRPSLTSHRSSFFFRVAQNDSSQVKAIGAIVKAFKWPQVVPIYSDNEFGDGIIPYLIDALQEVDAHVPYQSIISPTATDAQISNELRKLMTMPTRVFVVHMLSRHASRLFTKAKEIGMMKRGYVWIITDAIANELDLLEPSTFEAMQGVVGIKTYVPRTKRLDSLKQDWRKRFRRYFPTIEDIPELDAFGLWAYDAAWALAISVEKAGTDNLRYSAADAEKTNSSNCLFSLGVNQNGPKLRDAFSNVTFRGLAGEFSLINGQLQSSVFEVVNLIGNGGRNVGFWSAETGLTRKLQDSARAKGLRSIIWPGEPISSPKGWEIPTKGKKLRVGVPVKDGFWEFVNVVRDSKTNATIDVRGYCIDVFKAVIEALPYKVAYEFIPAEKSNAVPGGSYNELTYQLFLGKFDAVVGDITIRANRSSYIDYTLPFTKSGVAMVVPMRSNKNNNNAWVFLKPLTWNLWMLTAIFFLIVAFVVWILEHRVNEDFRGQPLDQICTSLWYSFSTMVFAHREVTLNNWTRLVVIIWLFVVLIITQSYTASLASLLTVQELKPTVTDINQLLKNGENIGYQGGSFVYEILKSLKFHDSQLKTYESAEEMHQLFTKGSLNGGISAAVDEIPYIDLFLAQYCSQYTTIEPTYKADGFGSPLVPDISRTILEVTESDRMREIENTWFKHLRECSASKVAELSSTRLSINSFWGLFLITGVVSFFSVAVYIGKFLYDERPHWRNVNGSNWNRFKNLAGKFLKRDPRAHPLRRRIFINGVPVNPEAVVVRDEDDRAG | 899 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 37505694 | 37509992 | + | Maker00034249 | Lcy13g1856 | 652161 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy13g1856 | 899 | Pfam | Receptor family ligand binding region | 43 | 395 | IPR001828 | - | |
Lcy13g1856 | 899 | Gene3D | - | 145 | 308 | - | - | |
Lcy13g1856 | 899 | FunFam | Glutamate receptor | 568 | 698 | - | - | |
Lcy13g1856 | 899 | CDD | PBP1_GABAb_receptor_plant | 30 | 414 | IPR044440 | - | |
Lcy13g1856 | 899 | Gene3D | - | 353 | 446 | - | - | |
Lcy13g1856 | 899 | FunFam | Glutamate receptor | 447 | 567 | - | - | |
Lcy13g1856 | 899 | SUPERFAMILY | Periplasmic binding protein-like I | 16 | 430 | IPR028082 | - | |
Lcy13g1856 | 899 | Pfam | Ligand-gated ion channel | 576 | 824 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
Lcy13g1856 | 899 | Pfam | Ligated ion channel L-glutamate- and glycine-binding site | 465 | 558 | IPR019594 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
Lcy13g1856 | 899 | CDD | GluR_Plant | 446 | 791 | - | - | |
Lcy13g1856 | 899 | SUPERFAMILY | Voltage-gated potassium channels | 575 | 663 | - | - | |
Lcy13g1856 | 899 | Gene3D | - | 568 | 710 | - | - | |
Lcy13g1856 | 899 | FunFam | Glutamate receptor | 145 | 303 | - | - | |
Lcy13g1856 | 899 | FunFam | Glutamate receptor | 714 | 762 | - | - | |
Lcy13g1856 | 899 | PIRSF | IGluLR_plant | 1 | 888 | IPR017103 | - | |
Lcy13g1856 | 899 | Gene3D | - | 46 | 144 | - | - | |
Lcy13g1856 | 899 | SUPERFAMILY | Periplasmic binding protein-like II | 424 | 792 | - | - | |
Lcy13g1856 | 899 | Gene3D | - | 447 | 567 | - | - | |
Lcy13g1856 | 899 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 24 | 855 | IPR015683 | GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER) | |
Lcy13g1856 | 899 | SMART | GluR_14 | 447 | 793 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy13g1856 | Lcy-Chr13:37505694 | Lcy13g1864 | Lcy-Chr13:37536827 | 0 | dispersed | |
Lcy13g1855 | Lcy-Chr13:37496920 | Lcy13g1856 | Lcy-Chr13:37505694 | 0 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy13g1856 | K05387 | - | csv:101203794 | 1345.49 |