Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1856 ATGTTGCTCACGGCGACGGTGCCGGTGACGGCGCAGGAGGAGGAGGCGGCGGCGGCGGCGAAAGTGAAAGTGAAGGTGGGTGTGGTTTTGGATTTGAATTTTGTTGTTGGGCAAATGGGTCTGAGTTGTATTTCAATGGCTCTTGCTGATTTCTATTCTTCTCGAAGTTATTACGAGACTAGAGTGATTCTCAACACCATTGATTCCAATAACACTGTTGTTGATGCAGCTGCTGCAGCCGTAGAATTGATAAAGAAAGAGGAAGTTCAAGCCATTATAGGCCCAACAAGCTCCATGCAAGCCAACTTCATTATCGGCCTTGGAGACAAAGCACACGTTCCCATCATCTCATTTTCAGCCACACGACCTTCCCTCACATCCCACCGCAGCTCCTTCTTCTTCCGAGTTGCCCAGAATGATTCCTCCCAAGTCAAAGCCATTGGAGCCATTGTCAAGGCCTTCAAATGGCCACAGGTCGTCCCCATCTACAGCGACAACGAGTTCGGCGATGGCATCATCCCTTACCTCATCGATGCTCTGCAAGAAGTCGACGCCCACGTGCCCTACCAGAGCATCATCTCCCCGACCGCCACCGATGCCCAAATCTCCAACGAGCTTCGCAAGCTGATGACGATGCCGACCAGAGTGTTCGTCGTGCACATGTTATCTCGCCATGCTTCTCGACTCTTCACAAAGGCTAAAGAGATTGGAATGATGAAGCGAGGCTACGTTTGGATAATCACAGACGCCATAGCAAACGAATTGGACTTATTAGAACCTTCGACTTTCGAGGCGATGCAAGGAGTTGTGGGAATAAAAACTTACGTCCCAAGAACCAAAAGGCTCGACTCCTTAAAACAAGATTGGCGGAAGAGATTTCGAAGGTATTTTCCAACCATAGAAGACATTCCCGAGCTGGACGCTTTTGGGTTATGGGCTTACGACGCCGCTTGGGCGCTGGCCATCTCCGTGGAAAAGGCCGGCACCGACAACCTACGATACAGCGCGGCCGACGCCGAGAAAACAAACTCATCAAACTGTCTATTCAGCCTTGGGGTCAATCAAAATGGTCCGAAGCTGCGAGATGCCTTCTCAAACGTCACGTTCAGGGGCTTGGCCGGTGAGTTCAGTCTAATCAATGGACAGTTACAGTCGTCGGTGTTCGAGGTAGTGAATCTAATCGGAAATGGTGGGAGAAACGTTGGGTTTTGGTCAGCAGAAACTGGGTTGACGAGGAAGCTGCAAGACTCGGCAAGAGCAAAGGGGTTGAGATCGATAATCTGGCCGGGAGAGCCGATTTCTTCTCCGAAAGGGTGGGAGATTCCGACGAAGGGGAAGAAGTTGAGAGTTGGGGTTCCAGTGAAGGATGGATTCTGGGAGTTCGTGAACGTGGTCCGTGATTCCAAAACAAATGCAACAATTGACGTAAGAGGATATTGCATAGACGTGTTCAAGGCCGTGATCGAAGCATTGCCTTATAAAGTTGCTTACGAGTTCATTCCTGCGGAGAAATCCAATGCAGTCCCAGGTGGCAGCTACAATGAGCTGACTTATCAACTCTTTCTTGGGAAGTTTGATGCTGTGGTGGGAGACATAACGATTCGAGCGAATAGGTCATCGTACATAGACTACACGTTGCCATTCACAAAATCCGGGGTGGCGATGGTTGTGCCGATGAGGAGCAACAAGAATAACAATAATGCGTGGGTGTTCTTAAAGCCATTAACATGGAATCTATGGATGCTCACAGCCATCTTCTTCCTCATTGTGGCGTTTGTTGTTTGGATCCTAGAACATCGTGTCAACGAAGACTTTCGTGGACAACCTTTGGATCAGATCTGTACCAGTCTCTGGTACTCTTTTTCCACCATGGTTTTTGCCCATAGGGAGGTTACGTTGAACAATTGGACAAGACTTGTGGTGATAATATGGCTATTTGTGGTTCTTATCATCACACAAAGTTACACTGCAAGTTTGGCCTCACTTTTGACGGTTCAAGAGCTGAAACCTACTGTAACTGATATCAATCAACTCCTTAAAAATGGAGAGAACATTGGATATCAGGGAGGTTCTTTCGTGTACGAGATTCTCAAGTCGCTGAAATTCCATGATTCCCAACTTAAAACTTACGAGTCTGCAGAAGAAATGCACCAACTTTTCACCAAAGGAAGCCTCAACGGCGGAATTTCTGCTGCAGTGGATGAAATCCCTTACATTGATCTGTTTCTCGCTCAGTACTGCTCACAATACACCACCATCGAACCCACTTATAAAGCCGATGGCTTTGGTTCGCCTTTAGTACCTGATATCTCCAGAACGATCTTGGAAGTGACAGAAAGCGATAGAATGAGAGAGATCGAAAACACATGGTTCAAACACTTGAGAGAATGTTCGGCTTCGAAAGTGGCCGAGTTGTCTTCCACCCGCTTGAGCATCAACAGCTTCTGGGGACTTTTCCTGATCACCGGCGTTGTTTCCTTCTTTTCTGTAGCTGTTTATATCGGAAAATTTCTCTACGACGAACGGCCGCATTGGCGGAACGTAAACGGTTCCAACTGGAATAGGTTCAAGAATTTGGCCGGCAAGTTCTTGAAGAGAGATCCCAGAGCTCACCCACTGAGGAGAAGGATATTCATTAATGGCGTTCCTGTTAATCCAGAAGCCGTAGTTGTTAGAGATGAAGATGATCGAGCAGGTTGA 2700 47.78 MLLTATVPVTAQEEEAAAAAKVKVKVGVVLDLNFVVGQMGLSCISMALADFYSSRSYYETRVILNTIDSNNTVVDAAAAAVELIKKEEVQAIIGPTSSMQANFIIGLGDKAHVPIISFSATRPSLTSHRSSFFFRVAQNDSSQVKAIGAIVKAFKWPQVVPIYSDNEFGDGIIPYLIDALQEVDAHVPYQSIISPTATDAQISNELRKLMTMPTRVFVVHMLSRHASRLFTKAKEIGMMKRGYVWIITDAIANELDLLEPSTFEAMQGVVGIKTYVPRTKRLDSLKQDWRKRFRRYFPTIEDIPELDAFGLWAYDAAWALAISVEKAGTDNLRYSAADAEKTNSSNCLFSLGVNQNGPKLRDAFSNVTFRGLAGEFSLINGQLQSSVFEVVNLIGNGGRNVGFWSAETGLTRKLQDSARAKGLRSIIWPGEPISSPKGWEIPTKGKKLRVGVPVKDGFWEFVNVVRDSKTNATIDVRGYCIDVFKAVIEALPYKVAYEFIPAEKSNAVPGGSYNELTYQLFLGKFDAVVGDITIRANRSSYIDYTLPFTKSGVAMVVPMRSNKNNNNAWVFLKPLTWNLWMLTAIFFLIVAFVVWILEHRVNEDFRGQPLDQICTSLWYSFSTMVFAHREVTLNNWTRLVVIIWLFVVLIITQSYTASLASLLTVQELKPTVTDINQLLKNGENIGYQGGSFVYEILKSLKFHDSQLKTYESAEEMHQLFTKGSLNGGISAAVDEIPYIDLFLAQYCSQYTTIEPTYKADGFGSPLVPDISRTILEVTESDRMREIENTWFKHLRECSASKVAELSSTRLSINSFWGLFLITGVVSFFSVAVYIGKFLYDERPHWRNVNGSNWNRFKNLAGKFLKRDPRAHPLRRRIFINGVPVNPEAVVVRDEDDRAG 899
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 37505694 37509992 + Maker00034249 Lcy13g1856 652161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1856 899 Pfam Receptor family ligand binding region 43 395 IPR001828 -
Lcy13g1856 899 Gene3D - 145 308 - -
Lcy13g1856 899 FunFam Glutamate receptor 568 698 - -
Lcy13g1856 899 CDD PBP1_GABAb_receptor_plant 30 414 IPR044440 -
Lcy13g1856 899 Gene3D - 353 446 - -
Lcy13g1856 899 FunFam Glutamate receptor 447 567 - -
Lcy13g1856 899 SUPERFAMILY Periplasmic binding protein-like I 16 430 IPR028082 -
Lcy13g1856 899 Pfam Ligand-gated ion channel 576 824 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Lcy13g1856 899 Pfam Ligated ion channel L-glutamate- and glycine-binding site 465 558 IPR019594 GO:0015276(InterPro)|GO:0016020(InterPro)
Lcy13g1856 899 CDD GluR_Plant 446 791 - -
Lcy13g1856 899 SUPERFAMILY Voltage-gated potassium channels 575 663 - -
Lcy13g1856 899 Gene3D - 568 710 - -
Lcy13g1856 899 FunFam Glutamate receptor 145 303 - -
Lcy13g1856 899 FunFam Glutamate receptor 714 762 - -
Lcy13g1856 899 PIRSF IGluLR_plant 1 888 IPR017103 -
Lcy13g1856 899 Gene3D - 46 144 - -
Lcy13g1856 899 SUPERFAMILY Periplasmic binding protein-like II 424 792 - -
Lcy13g1856 899 Gene3D - 447 567 - -
Lcy13g1856 899 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 24 855 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Lcy13g1856 899 SMART GluR_14 447 793 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1856 Lcy-Chr13:37505694 Lcy13g1864 Lcy-Chr13:37536827 0 dispersed
Lcy13g1855 Lcy-Chr13:37496920 Lcy13g1856 Lcy-Chr13:37505694 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1856 K05387 - csv:101203794 1345.49