Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy13g1864 | ATGATGAGGAGAAGAAAGGATTTGACAGTTAGTTTTGGAGTGTTGGTGATCGTTCTCTTCCTGGCGGCAGCGGCAGCACAGGAGGGGACGGAGGAGGAGGCGGCGGCAGTGAAAGTAAAGGTGGGTGTGGTTTTGGATTTGAATGTCACTGTTGGGAAGATGGGTCTGAGTTGTATTTCAATGGCTCTTATTGATTTCTATTCTTCTCGGAGTTATTATAAGACCAGAGTGATTCTCAACCCCATCGACTCCAATGGCACTGTTGTTGGTGCAGCTGCCGCAGCTTTAGATTTGATGAAGAAAGTTGAAGTGCAAGCCATTCTCGGCCCAACAAGTTCCATGCAAGCCAACTTCATGATCGACATTGGCGACAAAGCACACGTTCCCATCATCTCATTTTCAGCCACAAGACCTTCCCTCACATCCCATCAGAGCCCTTTCTTCTTCCGAGTCGCCCAAAACGATTCCTCTCAAGTGAAAGCCATTGCAGCCATCGTAAAGGCCTTCACATGGCAACAGGTCGTCCCCATCTACAGCGACAATGAGTTCGGCGACGGCATCATTCCCTACCTCATCGATGCTCTGCAAGAAGTCGATGCGCACGTGCCCTACCAGAGCATCATCTCCCCCACCGCCACCGACGACCAAATTAGTACTGAGCTTCACAAGCTGATGACGATGCAGACCAGAGTGTTTGTGGTGCACATGTTACGCCGCCATGCTTCCCGAATCTTCACAAAGGCTAAAGAGATTGGAATGATGGAGCCAGGCTACGTTTGGATAGTCACGGATGCGATAGCAAACGAGTTGGATTTGATTGAACCTTCAACTTTGGAGTCCATGCAAGGAGTTGTGGGGATAAAAACTCACGTCCCCACAACCAAGAGGCTCGAATTCTTTCAACTTAACTGGCGGAAGAGATTTCAAAGGTATTATCCTACCTTAAAAGAAATTCCAGAGCTGAACGTGTTTGGGTTATGGGCTTACGACGCCGCTTGGGCGCTGGCCATGGCCGTGGAAAAGGCTGGAACCAACAACCTTCGATACAGCCCGACCAATAATGTTACTACGTCGTCAAACTATCTATACAATCTTGGCGTGAATCAAAATGGTCTCAAGCTACAAGATGCCTTCTCAAATGTCACATTCAGGGGCTTGGCTGGTGAGTTCAGTCTAATCAATGGACAATTACAGTCGTCTGTTTTCGAGATAGTGAATGTGACTGGCAACGGAGAAAGAAACTTTGGGTTTTGGTCACCAGAAAATGGGCTAACGACGAAGTTGAAGAACTCTACAAGTGCAAGTGGGTTGAGATCAATCATCTGGCCGGGAAATCCGAGCTCTGCCCCAAAAGGGTGGGAGATTCCGACGAATGGGAAGCGATTGAGAGTTGGGGTTCCAGTGAAGAATGGATTTCATGAATTTGTGTGGGTGGATGGAATGAATGTGACTGGATATTGCATAGAAATATTCAAGGCTGTGCTAAAAGAATTGCCTTATGTTGGTGATCCTGAGTTCATTCATTTCGACACAACTGCAGGCTCAGGTGGCACCTACGATGAATTGGTTCATCAGCTCTTCCTTGGGACGTATGACGCCGTGGTGGGTGACATAACAATCCGGGCGAACAGGTCTTTAATCATAGACTACACATTGCCATTCATAGAATCGGGAGTGTCGATGGTTGTTCCGGTGAAGAGTAGCAAGAAAGATAACGCATGGGTGTTCTTGAAGCCTCTTACTTGGAGTCTGTGGGTACTCACAGCTGTCTTCTTCCTCCTCATCGCACTTGTTGTTTGGATTCTAGAGCATCGAGTCAACGAAGACTTTCGTGGACATCCTTTGGATCAGATATGCACCAGTCTTTGGTACTCTTTCTCCACCATGGTTTTTGCTCATAGGGAGATTGTGTTCAACAACTGGACAAGACTTGTGGTGATAATATGGCTATTTGTGGTTCTCATCATCACACAGAGTTACACTGCAAGTTTGGCATCTCTTTTGACGGTTCAAGAACTCAAACCAAGTGTAACTGATATCAATCAGCTGCTTAAAAATGGAGAGAACATTGGTTATCAGGGTGGTTCTTTCATTCGTGAGATTCTCAAGTCGTTGAAATTCGACGATTCCAAACTCATAATTTATGAGTCCGCAGAAGAAATGGACGAACTTTTCACCAGAGGAAGCGCAAATGGCGGAATTTCTGCTGCAATGGATGAAACCCCTTACATTAAACTATTTCTCGCTAAGTACTGCTCACAATACACCACCACCGAACCCACCTATAAAGCCGATGGCTTTGCTTTTGGCTTTCCAATTGGCTCGCCCTTAGTACCTGATATCTCCAGAGCGATCTTGGGGGTGATGGAAAACAAAACAATGATAGATATCGAAAAACTATTGTTCCAAAATGTGACAGGCTGTTCAACAACTTCAGAAGCTTCCACCCCCTTGAGCGTTGATAGCTTTTGGGGACTTTTCCTGATCACCGGCGTTGTTTCCCTCTTTTCCGTCGCTGTTTACATGGGCAAATTTCTCTACGACGAACAGCCACTGTGGCAAAACGTAGATTTTTCGATCTGGAAAAGATTTCGGGACTTGGTTGGCAAGTTCATAAGTAGAGATGTGAGAGCTCACTCGCTTAGGGGAAGGATATTCATAAATGGCGTTCCTGTTCATCCACAAGCTGTAGTTGTTAGAGATGATCACCCTCGAGCCGATTGA | 2724 | 46.33 | MMRRRKDLTVSFGVLVIVLFLAAAAAQEGTEEEAAAVKVKVGVVLDLNVTVGKMGLSCISMALIDFYSSRSYYKTRVILNPIDSNGTVVGAAAAALDLMKKVEVQAILGPTSSMQANFMIDIGDKAHVPIISFSATRPSLTSHQSPFFFRVAQNDSSQVKAIAAIVKAFTWQQVVPIYSDNEFGDGIIPYLIDALQEVDAHVPYQSIISPTATDDQISTELHKLMTMQTRVFVVHMLRRHASRIFTKAKEIGMMEPGYVWIVTDAIANELDLIEPSTLESMQGVVGIKTHVPTTKRLEFFQLNWRKRFQRYYPTLKEIPELNVFGLWAYDAAWALAMAVEKAGTNNLRYSPTNNVTTSSNYLYNLGVNQNGLKLQDAFSNVTFRGLAGEFSLINGQLQSSVFEIVNVTGNGERNFGFWSPENGLTTKLKNSTSASGLRSIIWPGNPSSAPKGWEIPTNGKRLRVGVPVKNGFHEFVWVDGMNVTGYCIEIFKAVLKELPYVGDPEFIHFDTTAGSGGTYDELVHQLFLGTYDAVVGDITIRANRSLIIDYTLPFIESGVSMVVPVKSSKKDNAWVFLKPLTWSLWVLTAVFFLLIALVVWILEHRVNEDFRGHPLDQICTSLWYSFSTMVFAHREIVFNNWTRLVVIIWLFVVLIITQSYTASLASLLTVQELKPSVTDINQLLKNGENIGYQGGSFIREILKSLKFDDSKLIIYESAEEMDELFTRGSANGGISAAMDETPYIKLFLAKYCSQYTTTEPTYKADGFAFGFPIGSPLVPDISRAILGVMENKTMIDIEKLLFQNVTGCSTTSEASTPLSVDSFWGLFLITGVVSLFSVAVYMGKFLYDEQPLWQNVDFSIWKRFRDLVGKFISRDVRAHSLRGRIFINGVPVHPQAVVVRDDHPRAD | 907 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 37536827 | 37543172 | + | Maker00034200 | Lcy13g1864 | 652169 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy13g1864 | 907 | PIRSF | IGluLR_plant | 8 | 891 | IPR017103 | - | |
Lcy13g1864 | 907 | Gene3D | - | 355 | 461 | - | - | |
Lcy13g1864 | 907 | SUPERFAMILY | Periplasmic binding protein-like I | 38 | 454 | IPR028082 | - | |
Lcy13g1864 | 907 | Gene3D | - | 573 | 703 | - | - | |
Lcy13g1864 | 907 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 39 | 853 | IPR015683 | GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER) | |
Lcy13g1864 | 907 | FunFam | Glutamate receptor | 160 | 318 | - | - | |
Lcy13g1864 | 907 | Pfam | Ligand-gated ion channel | 581 | 832 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
Lcy13g1864 | 907 | FunFam | Glutamate receptor | 457 | 572 | - | - | |
Lcy13g1864 | 907 | CDD | PBP1_GABAb_receptor_plant | 45 | 428 | IPR044440 | - | |
Lcy13g1864 | 907 | Gene3D | - | 462 | 572 | - | - | |
Lcy13g1864 | 907 | CDD | GluR_Plant | 460 | 802 | - | - | |
Lcy13g1864 | 907 | FunFam | Glutamate receptor | 719 | 767 | - | - | |
Lcy13g1864 | 907 | Pfam | Receptor family ligand binding region | 58 | 410 | IPR001828 | - | |
Lcy13g1864 | 907 | SMART | GluR_14 | 461 | 804 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
Lcy13g1864 | 907 | FunFam | Glutamate receptor | 573 | 703 | - | - | |
Lcy13g1864 | 907 | Gene3D | - | 156 | 323 | - | - | |
Lcy13g1864 | 907 | SUPERFAMILY | Periplasmic binding protein-like II | 437 | 799 | - | - | |
Lcy13g1864 | 907 | Pfam | Ligated ion channel L-glutamate- and glycine-binding site | 482 | 565 | IPR019594 | GO:0015276(InterPro)|GO:0016020(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy13g1853 | Lcy-Chr13:37477830 | Lcy13g1864 | Lcy-Chr13:37536827 | 6.78E-270 | dispersed | |
Lcy13g1854 | Lcy-Chr13:37487571 | Lcy13g1864 | Lcy-Chr13:37536827 | 7.40E-172 | dispersed | |
Lcy13g1856 | Lcy-Chr13:37505694 | Lcy13g1864 | Lcy-Chr13:37536827 | 0 | dispersed | |
Lcy13g1864 | Lcy-Chr13:37536827 | Lcy13g1866 | Lcy-Chr13:37547779 | 0 | dispersed | |
Lcy13g1863 | Lcy-Chr13:37530930 | Lcy13g1864 | Lcy-Chr13:37536827 | 2.24E-183 | tandem | |
Lcy13g1864 | Lcy-Chr13:37536827 | Lcy13g1865 | Lcy-Chr13:37547779 | 0 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy13g1864 | K05387 | - | csv:101203794 | 1190.64 |