Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1864 ATGATGAGGAGAAGAAAGGATTTGACAGTTAGTTTTGGAGTGTTGGTGATCGTTCTCTTCCTGGCGGCAGCGGCAGCACAGGAGGGGACGGAGGAGGAGGCGGCGGCAGTGAAAGTAAAGGTGGGTGTGGTTTTGGATTTGAATGTCACTGTTGGGAAGATGGGTCTGAGTTGTATTTCAATGGCTCTTATTGATTTCTATTCTTCTCGGAGTTATTATAAGACCAGAGTGATTCTCAACCCCATCGACTCCAATGGCACTGTTGTTGGTGCAGCTGCCGCAGCTTTAGATTTGATGAAGAAAGTTGAAGTGCAAGCCATTCTCGGCCCAACAAGTTCCATGCAAGCCAACTTCATGATCGACATTGGCGACAAAGCACACGTTCCCATCATCTCATTTTCAGCCACAAGACCTTCCCTCACATCCCATCAGAGCCCTTTCTTCTTCCGAGTCGCCCAAAACGATTCCTCTCAAGTGAAAGCCATTGCAGCCATCGTAAAGGCCTTCACATGGCAACAGGTCGTCCCCATCTACAGCGACAATGAGTTCGGCGACGGCATCATTCCCTACCTCATCGATGCTCTGCAAGAAGTCGATGCGCACGTGCCCTACCAGAGCATCATCTCCCCCACCGCCACCGACGACCAAATTAGTACTGAGCTTCACAAGCTGATGACGATGCAGACCAGAGTGTTTGTGGTGCACATGTTACGCCGCCATGCTTCCCGAATCTTCACAAAGGCTAAAGAGATTGGAATGATGGAGCCAGGCTACGTTTGGATAGTCACGGATGCGATAGCAAACGAGTTGGATTTGATTGAACCTTCAACTTTGGAGTCCATGCAAGGAGTTGTGGGGATAAAAACTCACGTCCCCACAACCAAGAGGCTCGAATTCTTTCAACTTAACTGGCGGAAGAGATTTCAAAGGTATTATCCTACCTTAAAAGAAATTCCAGAGCTGAACGTGTTTGGGTTATGGGCTTACGACGCCGCTTGGGCGCTGGCCATGGCCGTGGAAAAGGCTGGAACCAACAACCTTCGATACAGCCCGACCAATAATGTTACTACGTCGTCAAACTATCTATACAATCTTGGCGTGAATCAAAATGGTCTCAAGCTACAAGATGCCTTCTCAAATGTCACATTCAGGGGCTTGGCTGGTGAGTTCAGTCTAATCAATGGACAATTACAGTCGTCTGTTTTCGAGATAGTGAATGTGACTGGCAACGGAGAAAGAAACTTTGGGTTTTGGTCACCAGAAAATGGGCTAACGACGAAGTTGAAGAACTCTACAAGTGCAAGTGGGTTGAGATCAATCATCTGGCCGGGAAATCCGAGCTCTGCCCCAAAAGGGTGGGAGATTCCGACGAATGGGAAGCGATTGAGAGTTGGGGTTCCAGTGAAGAATGGATTTCATGAATTTGTGTGGGTGGATGGAATGAATGTGACTGGATATTGCATAGAAATATTCAAGGCTGTGCTAAAAGAATTGCCTTATGTTGGTGATCCTGAGTTCATTCATTTCGACACAACTGCAGGCTCAGGTGGCACCTACGATGAATTGGTTCATCAGCTCTTCCTTGGGACGTATGACGCCGTGGTGGGTGACATAACAATCCGGGCGAACAGGTCTTTAATCATAGACTACACATTGCCATTCATAGAATCGGGAGTGTCGATGGTTGTTCCGGTGAAGAGTAGCAAGAAAGATAACGCATGGGTGTTCTTGAAGCCTCTTACTTGGAGTCTGTGGGTACTCACAGCTGTCTTCTTCCTCCTCATCGCACTTGTTGTTTGGATTCTAGAGCATCGAGTCAACGAAGACTTTCGTGGACATCCTTTGGATCAGATATGCACCAGTCTTTGGTACTCTTTCTCCACCATGGTTTTTGCTCATAGGGAGATTGTGTTCAACAACTGGACAAGACTTGTGGTGATAATATGGCTATTTGTGGTTCTCATCATCACACAGAGTTACACTGCAAGTTTGGCATCTCTTTTGACGGTTCAAGAACTCAAACCAAGTGTAACTGATATCAATCAGCTGCTTAAAAATGGAGAGAACATTGGTTATCAGGGTGGTTCTTTCATTCGTGAGATTCTCAAGTCGTTGAAATTCGACGATTCCAAACTCATAATTTATGAGTCCGCAGAAGAAATGGACGAACTTTTCACCAGAGGAAGCGCAAATGGCGGAATTTCTGCTGCAATGGATGAAACCCCTTACATTAAACTATTTCTCGCTAAGTACTGCTCACAATACACCACCACCGAACCCACCTATAAAGCCGATGGCTTTGCTTTTGGCTTTCCAATTGGCTCGCCCTTAGTACCTGATATCTCCAGAGCGATCTTGGGGGTGATGGAAAACAAAACAATGATAGATATCGAAAAACTATTGTTCCAAAATGTGACAGGCTGTTCAACAACTTCAGAAGCTTCCACCCCCTTGAGCGTTGATAGCTTTTGGGGACTTTTCCTGATCACCGGCGTTGTTTCCCTCTTTTCCGTCGCTGTTTACATGGGCAAATTTCTCTACGACGAACAGCCACTGTGGCAAAACGTAGATTTTTCGATCTGGAAAAGATTTCGGGACTTGGTTGGCAAGTTCATAAGTAGAGATGTGAGAGCTCACTCGCTTAGGGGAAGGATATTCATAAATGGCGTTCCTGTTCATCCACAAGCTGTAGTTGTTAGAGATGATCACCCTCGAGCCGATTGA 2724 46.33 MMRRRKDLTVSFGVLVIVLFLAAAAAQEGTEEEAAAVKVKVGVVLDLNVTVGKMGLSCISMALIDFYSSRSYYKTRVILNPIDSNGTVVGAAAAALDLMKKVEVQAILGPTSSMQANFMIDIGDKAHVPIISFSATRPSLTSHQSPFFFRVAQNDSSQVKAIAAIVKAFTWQQVVPIYSDNEFGDGIIPYLIDALQEVDAHVPYQSIISPTATDDQISTELHKLMTMQTRVFVVHMLRRHASRIFTKAKEIGMMEPGYVWIVTDAIANELDLIEPSTLESMQGVVGIKTHVPTTKRLEFFQLNWRKRFQRYYPTLKEIPELNVFGLWAYDAAWALAMAVEKAGTNNLRYSPTNNVTTSSNYLYNLGVNQNGLKLQDAFSNVTFRGLAGEFSLINGQLQSSVFEIVNVTGNGERNFGFWSPENGLTTKLKNSTSASGLRSIIWPGNPSSAPKGWEIPTNGKRLRVGVPVKNGFHEFVWVDGMNVTGYCIEIFKAVLKELPYVGDPEFIHFDTTAGSGGTYDELVHQLFLGTYDAVVGDITIRANRSLIIDYTLPFIESGVSMVVPVKSSKKDNAWVFLKPLTWSLWVLTAVFFLLIALVVWILEHRVNEDFRGHPLDQICTSLWYSFSTMVFAHREIVFNNWTRLVVIIWLFVVLIITQSYTASLASLLTVQELKPSVTDINQLLKNGENIGYQGGSFIREILKSLKFDDSKLIIYESAEEMDELFTRGSANGGISAAMDETPYIKLFLAKYCSQYTTTEPTYKADGFAFGFPIGSPLVPDISRAILGVMENKTMIDIEKLLFQNVTGCSTTSEASTPLSVDSFWGLFLITGVVSLFSVAVYMGKFLYDEQPLWQNVDFSIWKRFRDLVGKFISRDVRAHSLRGRIFINGVPVHPQAVVVRDDHPRAD 907
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 37536827 37543172 + Maker00034200 Lcy13g1864 652169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1864 907 PIRSF IGluLR_plant 8 891 IPR017103 -
Lcy13g1864 907 Gene3D - 355 461 - -
Lcy13g1864 907 SUPERFAMILY Periplasmic binding protein-like I 38 454 IPR028082 -
Lcy13g1864 907 Gene3D - 573 703 - -
Lcy13g1864 907 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 39 853 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Lcy13g1864 907 FunFam Glutamate receptor 160 318 - -
Lcy13g1864 907 Pfam Ligand-gated ion channel 581 832 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Lcy13g1864 907 FunFam Glutamate receptor 457 572 - -
Lcy13g1864 907 CDD PBP1_GABAb_receptor_plant 45 428 IPR044440 -
Lcy13g1864 907 Gene3D - 462 572 - -
Lcy13g1864 907 CDD GluR_Plant 460 802 - -
Lcy13g1864 907 FunFam Glutamate receptor 719 767 - -
Lcy13g1864 907 Pfam Receptor family ligand binding region 58 410 IPR001828 -
Lcy13g1864 907 SMART GluR_14 461 804 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Lcy13g1864 907 FunFam Glutamate receptor 573 703 - -
Lcy13g1864 907 Gene3D - 156 323 - -
Lcy13g1864 907 SUPERFAMILY Periplasmic binding protein-like II 437 799 - -
Lcy13g1864 907 Pfam Ligated ion channel L-glutamate- and glycine-binding site 482 565 IPR019594 GO:0015276(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1853 Lcy-Chr13:37477830 Lcy13g1864 Lcy-Chr13:37536827 6.78E-270 dispersed
Lcy13g1854 Lcy-Chr13:37487571 Lcy13g1864 Lcy-Chr13:37536827 7.40E-172 dispersed
Lcy13g1856 Lcy-Chr13:37505694 Lcy13g1864 Lcy-Chr13:37536827 0 dispersed
Lcy13g1864 Lcy-Chr13:37536827 Lcy13g1866 Lcy-Chr13:37547779 0 dispersed
Lcy13g1863 Lcy-Chr13:37530930 Lcy13g1864 Lcy-Chr13:37536827 2.24E-183 tandem
Lcy13g1864 Lcy-Chr13:37536827 Lcy13g1865 Lcy-Chr13:37547779 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1864 K05387 - csv:101203794 1190.64