Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy13g1866 | ATGAGGAGAAGCAAAAATGGAGGATTTGGGGTGCTGGTGATCGTTGTCTTCTTTAGCATACTACAGTCGGCGGCGGCGGAGACGGCCGCAGTGAAAGTGGGTGTGGTTTTGGATTCAAATGCTTTTGGTAAGATGGGTTTGAGTTGTATTTCAATGGCTCTCTCTGATTTTTATGATTCTCGAAGCCATTACAAAACTAGAGTGGTTCTCAACACTACTGATTCCAATGGGACAGTTGTTGGTGCAGCTGCTGCAGCTCTAGATTTGATAAAGAAAGGGGAAGTGCAAGCCATTCTAGGCCCAACAGACTCCATGCAAGCCAACTTCATGATCGAGATCGGAGACAAAGCACACGTTCCCATCATCTCATTTTCAGCCACACGACCTTCCCTCACATCTCACCGCAGCTCTTTCTTCTTTCGAGTCGCCCAAAACGATTCCTCTCAAGTGAAAGCCATTGCAGCCATCGTCAAGACCTTCAAATGGCGACGTGTCGTCCCCATCTATGCCAACAACGAGTTCGGCGACGGCATCATCCCTTACCTCGTCGATGCTCTGCAAGAAGTTAATGCTCAAGTGCCGTACCAGAGCATCATCTCCACAACCGCCACCAACGACCAGATCGCCAGTGAGCTCTACAAGTTGATGACAATGCAGACCAGAGTGTTCGTGGTGCACACGTTACCAAGCCTGGCGTCTCGACTCTTCACCAAGGCCAAAGAGATTGGAATGATGAAGCAGGGCTACGTTTGGATAATCACCGACGCTATAACGAACCAATTTGATTTGATTGAACCTTCAACTTTGGAGTCGATGGAAGGTGTTGTAGGGATAAAAACTTACGTCCCGAGATCCATGAGACTCGACTCCTTTAAACTTGAATGGCGTAAGAGATTTCGAAGGTATTTTCCATCCATGGAAGACGACGTTCCTGAACTCAATGTGTTTGGGTTATGGGCTTACGATGCCGCTTGGGCGCTGGCCATTGCAGTGGAAAAGGCCGGCACCAATAACCTTAGATATAGTTGGGAAAATGTCTCCTCGTCAAACTATTTATACAACCTTGGCATCAATCAAAACGGTCCGAAGCTGCGAGATGCATTTTCAAATGTCACATTCAAGGGCTTGGCTGGGGAGTTTCAGCTCATGAATGGGCAACTACAGTCGTCTATTTTCGAGATAGTGAATGTGCTTGGGAATGGTCGAAGAAAGGTTGGATTTTGGTTGCCGCAAACTGGGCTGACGAGGAAATTGCGGGACTCAGGAGCAGAAGGGCTAAAACTGATCACCTGGCCTGGAGATTTGACTTCTGCCCCAAAAGGGTGGGAGATTCCGACGAACGTGAAGAAGTTGAGAGTTGGGGTTCCAGTGAAGGATGGATTTTATGAGTTTGTGAGAGTGATTATTGATCCTAAAACAAATGCAACACAAGTGACTGGATATTGCATAGATGTGTTTCAGGCTGTGATTGAAGCGCTTCCTTATGCAGTTGGTTATGAGTTCATTCCTTTTACCAAACCCAATGGAGAACCAGGTGGCTCCTACGATGAGTTGACTTGGCAACTCCATGTTGGAAATTATGATGCTGTGGTGGGTGACATAACAATACGAGCGAACAGATCTTTGTATATGGACTACACATTACCATTCACTGAATCTGGCATTTCGTTAGTTGTGCCAATGAAGAGCAGCAAGAGCACAAATGCATCGATTTTCATAAAGCCTCTTACTTGGAGACTGTGGCTGCTCACAGCCGTCTTTTCCATCTTCATGGCACTTGTTGTTTGGATCTTTGAACACAGAGTCAATGAAGACTTTCGTGGACATCCTTTCGATCAGATCTGTGTCAGTCTCTGGTATTCTTTGTCAACTATGGTTTTTTCCCATCGTGAAATTACGCTCAACAACTGGACAAGACTTGTGGTAATAATATGGCTATTTGTGGTTCTCATCATTACACAAAGTTACACTGCAAATTTGGCCTCACTTTTGACGGTTGAAGAGCTGAAACCAACTATAACTGACATCAATCAGCTGCGTGCAAATGGAGAGAACATCGGGTATCCAGAAGGTTCTTTCGTGCTCGAGATTCTCAAGAAGTTGAATTTCGATGATTCTCATCTCAAAACTTTCCAGTCTTTAGAAGAAATGCATGAACTTTTCTCGAGAGGAAGCAGGGATGGTGGAATTTCTGCTGCCATGGATGAAACCCCGTACATTAAGCTGTTTCTCTCTAAGTACTGCCCGAATTATACCACCACGGAAGCCACCTACAAAGCCAATGGCTTCGGCTTTGGTTTCCCAAAGGGTTCGCCGTTGGTGCCTGATATGTCCAGAGCGATATTGAAGGTGACAGAAGGCGATAGAATGAGAGAGATCGAAAACGCATGGTTTCGGAAGGTCAGAGACTGTTCGGATTCAGAAACCACCAAGTTGCCTTCGACACAGACAAACCTGAGCGTGGACAGCTTCTGGGTACTTTTTTTAATCACCGGCGTTGTTTCCCTCTTTTCTTGTGCTGTTTACATGGGAAAATTTCTGTACGATGAACGGCGGCTGTGGCGAGACGAAAGTGCTCCAATCTGGGGAAGAATTTGGGGTTTGGTTGGGAAGTTCAAGCAGAGAGATGCGAGAGCTCACCCGCTCAGGAGAAGGTTGTTCATAAATGGTGTTCGAGTTCAGCCAGATCAAGCTGTAGTTGTTGGAGATCATCATCGCCCTGGAGCAGATTGA | 2733 | 46.18 | MRRSKNGGFGVLVIVVFFSILQSAAAETAAVKVGVVLDSNAFGKMGLSCISMALSDFYDSRSHYKTRVVLNTTDSNGTVVGAAAAALDLIKKGEVQAILGPTDSMQANFMIEIGDKAHVPIISFSATRPSLTSHRSSFFFRVAQNDSSQVKAIAAIVKTFKWRRVVPIYANNEFGDGIIPYLVDALQEVNAQVPYQSIISTTATNDQIASELYKLMTMQTRVFVVHTLPSLASRLFTKAKEIGMMKQGYVWIITDAITNQFDLIEPSTLESMEGVVGIKTYVPRSMRLDSFKLEWRKRFRRYFPSMEDDVPELNVFGLWAYDAAWALAIAVEKAGTNNLRYSWENVSSSNYLYNLGINQNGPKLRDAFSNVTFKGLAGEFQLMNGQLQSSIFEIVNVLGNGRRKVGFWLPQTGLTRKLRDSGAEGLKLITWPGDLTSAPKGWEIPTNVKKLRVGVPVKDGFYEFVRVIIDPKTNATQVTGYCIDVFQAVIEALPYAVGYEFIPFTKPNGEPGGSYDELTWQLHVGNYDAVVGDITIRANRSLYMDYTLPFTESGISLVVPMKSSKSTNASIFIKPLTWRLWLLTAVFSIFMALVVWIFEHRVNEDFRGHPFDQICVSLWYSLSTMVFSHREITLNNWTRLVVIIWLFVVLIITQSYTANLASLLTVEELKPTITDINQLRANGENIGYPEGSFVLEILKKLNFDDSHLKTFQSLEEMHELFSRGSRDGGISAAMDETPYIKLFLSKYCPNYTTTEATYKANGFGFGFPKGSPLVPDMSRAILKVTEGDRMREIENAWFRKVRDCSDSETTKLPSTQTNLSVDSFWVLFLITGVVSLFSCAVYMGKFLYDERRLWRDESAPIWGRIWGLVGKFKQRDARAHPLRRRLFINGVRVQPDQAVVVGDHHRPGAD | 910 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 37547779 | 37554447 | - | Maker00034063 | Lcy13g1866 | 652171 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy13g1866 | 910 | CDD | GluR_Plant | 449 | 798 | - | - | |
Lcy13g1866 | 910 | SMART | GluR_14 | 450 | 800 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
Lcy13g1866 | 910 | Pfam | Bacterial extracellular solute-binding proteins, family 3 | 475 | 576 | IPR001638 | - | |
Lcy13g1866 | 910 | PIRSF | IGluLR_plant | 5 | 902 | IPR017103 | - | |
Lcy13g1866 | 910 | Gene3D | - | 147 | 312 | - | - | |
Lcy13g1866 | 910 | FunFam | Glutamate receptor | 151 | 308 | - | - | |
Lcy13g1866 | 910 | FunFam | Glutamate receptor | 569 | 699 | - | - | |
Lcy13g1866 | 910 | Pfam | Ligand-gated ion channel | 800 | 833 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
Lcy13g1866 | 910 | SUPERFAMILY | Periplasmic binding protein-like I | 24 | 433 | IPR028082 | - | |
Lcy13g1866 | 910 | Gene3D | - | 570 | 701 | - | - | |
Lcy13g1866 | 910 | SUPERFAMILY | Periplasmic binding protein-like II | 427 | 799 | - | - | |
Lcy13g1866 | 910 | Gene3D | - | 313 | 450 | - | - | |
Lcy13g1866 | 910 | Gene3D | - | 451 | 569 | - | - | |
Lcy13g1866 | 910 | FunFam | Glutamate receptor | 450 | 569 | - | - | |
Lcy13g1866 | 910 | Gene3D | - | 749 | 806 | - | - | |
Lcy13g1866 | 910 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 31 | 871 | IPR015683 | GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER) | |
Lcy13g1866 | 910 | Pfam | Receptor family ligand binding region | 49 | 398 | IPR001828 | - | |
Lcy13g1866 | 910 | CDD | PBP1_GABAb_receptor_plant | 32 | 418 | IPR044440 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy13g1855 | Lcy-Chr13:37496920 | Lcy13g1866 | Lcy-Chr13:37547779 | 0 | dispersed | |
Lcy13g1864 | Lcy-Chr13:37536827 | Lcy13g1866 | Lcy-Chr13:37547779 | 0 | dispersed | |
Lcy13g1866 | Lcy-Chr13:37547779 | Lcy13g2238 | Lcy-Chr13:41285024 | 1.16e-317 | dispersed | |
Lcy13g1865 | Lcy-Chr13:37547779 | Lcy13g1866 | Lcy-Chr13:37547779 | 0 | tandem | |
Lcy13g1866 | Lcy-Chr13:37547779 | Lcy13g1867 | Lcy-Chr13:37560058 | 9.36E-42 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy13g1866 | K05387 | - | csv:101204040 | 1202.19 |