Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1866 ATGAGGAGAAGCAAAAATGGAGGATTTGGGGTGCTGGTGATCGTTGTCTTCTTTAGCATACTACAGTCGGCGGCGGCGGAGACGGCCGCAGTGAAAGTGGGTGTGGTTTTGGATTCAAATGCTTTTGGTAAGATGGGTTTGAGTTGTATTTCAATGGCTCTCTCTGATTTTTATGATTCTCGAAGCCATTACAAAACTAGAGTGGTTCTCAACACTACTGATTCCAATGGGACAGTTGTTGGTGCAGCTGCTGCAGCTCTAGATTTGATAAAGAAAGGGGAAGTGCAAGCCATTCTAGGCCCAACAGACTCCATGCAAGCCAACTTCATGATCGAGATCGGAGACAAAGCACACGTTCCCATCATCTCATTTTCAGCCACACGACCTTCCCTCACATCTCACCGCAGCTCTTTCTTCTTTCGAGTCGCCCAAAACGATTCCTCTCAAGTGAAAGCCATTGCAGCCATCGTCAAGACCTTCAAATGGCGACGTGTCGTCCCCATCTATGCCAACAACGAGTTCGGCGACGGCATCATCCCTTACCTCGTCGATGCTCTGCAAGAAGTTAATGCTCAAGTGCCGTACCAGAGCATCATCTCCACAACCGCCACCAACGACCAGATCGCCAGTGAGCTCTACAAGTTGATGACAATGCAGACCAGAGTGTTCGTGGTGCACACGTTACCAAGCCTGGCGTCTCGACTCTTCACCAAGGCCAAAGAGATTGGAATGATGAAGCAGGGCTACGTTTGGATAATCACCGACGCTATAACGAACCAATTTGATTTGATTGAACCTTCAACTTTGGAGTCGATGGAAGGTGTTGTAGGGATAAAAACTTACGTCCCGAGATCCATGAGACTCGACTCCTTTAAACTTGAATGGCGTAAGAGATTTCGAAGGTATTTTCCATCCATGGAAGACGACGTTCCTGAACTCAATGTGTTTGGGTTATGGGCTTACGATGCCGCTTGGGCGCTGGCCATTGCAGTGGAAAAGGCCGGCACCAATAACCTTAGATATAGTTGGGAAAATGTCTCCTCGTCAAACTATTTATACAACCTTGGCATCAATCAAAACGGTCCGAAGCTGCGAGATGCATTTTCAAATGTCACATTCAAGGGCTTGGCTGGGGAGTTTCAGCTCATGAATGGGCAACTACAGTCGTCTATTTTCGAGATAGTGAATGTGCTTGGGAATGGTCGAAGAAAGGTTGGATTTTGGTTGCCGCAAACTGGGCTGACGAGGAAATTGCGGGACTCAGGAGCAGAAGGGCTAAAACTGATCACCTGGCCTGGAGATTTGACTTCTGCCCCAAAAGGGTGGGAGATTCCGACGAACGTGAAGAAGTTGAGAGTTGGGGTTCCAGTGAAGGATGGATTTTATGAGTTTGTGAGAGTGATTATTGATCCTAAAACAAATGCAACACAAGTGACTGGATATTGCATAGATGTGTTTCAGGCTGTGATTGAAGCGCTTCCTTATGCAGTTGGTTATGAGTTCATTCCTTTTACCAAACCCAATGGAGAACCAGGTGGCTCCTACGATGAGTTGACTTGGCAACTCCATGTTGGAAATTATGATGCTGTGGTGGGTGACATAACAATACGAGCGAACAGATCTTTGTATATGGACTACACATTACCATTCACTGAATCTGGCATTTCGTTAGTTGTGCCAATGAAGAGCAGCAAGAGCACAAATGCATCGATTTTCATAAAGCCTCTTACTTGGAGACTGTGGCTGCTCACAGCCGTCTTTTCCATCTTCATGGCACTTGTTGTTTGGATCTTTGAACACAGAGTCAATGAAGACTTTCGTGGACATCCTTTCGATCAGATCTGTGTCAGTCTCTGGTATTCTTTGTCAACTATGGTTTTTTCCCATCGTGAAATTACGCTCAACAACTGGACAAGACTTGTGGTAATAATATGGCTATTTGTGGTTCTCATCATTACACAAAGTTACACTGCAAATTTGGCCTCACTTTTGACGGTTGAAGAGCTGAAACCAACTATAACTGACATCAATCAGCTGCGTGCAAATGGAGAGAACATCGGGTATCCAGAAGGTTCTTTCGTGCTCGAGATTCTCAAGAAGTTGAATTTCGATGATTCTCATCTCAAAACTTTCCAGTCTTTAGAAGAAATGCATGAACTTTTCTCGAGAGGAAGCAGGGATGGTGGAATTTCTGCTGCCATGGATGAAACCCCGTACATTAAGCTGTTTCTCTCTAAGTACTGCCCGAATTATACCACCACGGAAGCCACCTACAAAGCCAATGGCTTCGGCTTTGGTTTCCCAAAGGGTTCGCCGTTGGTGCCTGATATGTCCAGAGCGATATTGAAGGTGACAGAAGGCGATAGAATGAGAGAGATCGAAAACGCATGGTTTCGGAAGGTCAGAGACTGTTCGGATTCAGAAACCACCAAGTTGCCTTCGACACAGACAAACCTGAGCGTGGACAGCTTCTGGGTACTTTTTTTAATCACCGGCGTTGTTTCCCTCTTTTCTTGTGCTGTTTACATGGGAAAATTTCTGTACGATGAACGGCGGCTGTGGCGAGACGAAAGTGCTCCAATCTGGGGAAGAATTTGGGGTTTGGTTGGGAAGTTCAAGCAGAGAGATGCGAGAGCTCACCCGCTCAGGAGAAGGTTGTTCATAAATGGTGTTCGAGTTCAGCCAGATCAAGCTGTAGTTGTTGGAGATCATCATCGCCCTGGAGCAGATTGA 2733 46.18 MRRSKNGGFGVLVIVVFFSILQSAAAETAAVKVGVVLDSNAFGKMGLSCISMALSDFYDSRSHYKTRVVLNTTDSNGTVVGAAAAALDLIKKGEVQAILGPTDSMQANFMIEIGDKAHVPIISFSATRPSLTSHRSSFFFRVAQNDSSQVKAIAAIVKTFKWRRVVPIYANNEFGDGIIPYLVDALQEVNAQVPYQSIISTTATNDQIASELYKLMTMQTRVFVVHTLPSLASRLFTKAKEIGMMKQGYVWIITDAITNQFDLIEPSTLESMEGVVGIKTYVPRSMRLDSFKLEWRKRFRRYFPSMEDDVPELNVFGLWAYDAAWALAIAVEKAGTNNLRYSWENVSSSNYLYNLGINQNGPKLRDAFSNVTFKGLAGEFQLMNGQLQSSIFEIVNVLGNGRRKVGFWLPQTGLTRKLRDSGAEGLKLITWPGDLTSAPKGWEIPTNVKKLRVGVPVKDGFYEFVRVIIDPKTNATQVTGYCIDVFQAVIEALPYAVGYEFIPFTKPNGEPGGSYDELTWQLHVGNYDAVVGDITIRANRSLYMDYTLPFTESGISLVVPMKSSKSTNASIFIKPLTWRLWLLTAVFSIFMALVVWIFEHRVNEDFRGHPFDQICVSLWYSLSTMVFSHREITLNNWTRLVVIIWLFVVLIITQSYTANLASLLTVEELKPTITDINQLRANGENIGYPEGSFVLEILKKLNFDDSHLKTFQSLEEMHELFSRGSRDGGISAAMDETPYIKLFLSKYCPNYTTTEATYKANGFGFGFPKGSPLVPDMSRAILKVTEGDRMREIENAWFRKVRDCSDSETTKLPSTQTNLSVDSFWVLFLITGVVSLFSCAVYMGKFLYDERRLWRDESAPIWGRIWGLVGKFKQRDARAHPLRRRLFINGVRVQPDQAVVVGDHHRPGAD 910
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 37547779 37554447 - Maker00034063 Lcy13g1866 652171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1866 910 CDD GluR_Plant 449 798 - -
Lcy13g1866 910 SMART GluR_14 450 800 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Lcy13g1866 910 Pfam Bacterial extracellular solute-binding proteins, family 3 475 576 IPR001638 -
Lcy13g1866 910 PIRSF IGluLR_plant 5 902 IPR017103 -
Lcy13g1866 910 Gene3D - 147 312 - -
Lcy13g1866 910 FunFam Glutamate receptor 151 308 - -
Lcy13g1866 910 FunFam Glutamate receptor 569 699 - -
Lcy13g1866 910 Pfam Ligand-gated ion channel 800 833 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Lcy13g1866 910 SUPERFAMILY Periplasmic binding protein-like I 24 433 IPR028082 -
Lcy13g1866 910 Gene3D - 570 701 - -
Lcy13g1866 910 SUPERFAMILY Periplasmic binding protein-like II 427 799 - -
Lcy13g1866 910 Gene3D - 313 450 - -
Lcy13g1866 910 Gene3D - 451 569 - -
Lcy13g1866 910 FunFam Glutamate receptor 450 569 - -
Lcy13g1866 910 Gene3D - 749 806 - -
Lcy13g1866 910 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 31 871 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Lcy13g1866 910 Pfam Receptor family ligand binding region 49 398 IPR001828 -
Lcy13g1866 910 CDD PBP1_GABAb_receptor_plant 32 418 IPR044440 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1855 Lcy-Chr13:37496920 Lcy13g1866 Lcy-Chr13:37547779 0 dispersed
Lcy13g1864 Lcy-Chr13:37536827 Lcy13g1866 Lcy-Chr13:37547779 0 dispersed
Lcy13g1866 Lcy-Chr13:37547779 Lcy13g2238 Lcy-Chr13:41285024 1.16e-317 dispersed
Lcy13g1865 Lcy-Chr13:37547779 Lcy13g1866 Lcy-Chr13:37547779 0 tandem
Lcy13g1866 Lcy-Chr13:37547779 Lcy13g1867 Lcy-Chr13:37560058 9.36E-42 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1866 K05387 - csv:101204040 1202.19