Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1870 ATGCAAGGAGCTGAGGAGGACAATGCAATATCAGTCCAAGGAGACAACCAGGAAATGGGCCCCGGAGAAAAAACAGGCCAGAGGGTCGGACCTTGGCCCAACCCATATGGTCGGCCCACTCGCGTGGGCCGAGTCCTTCCGCCTCCGTTCGCATCGGAGGCGGTGTGGCAAGCACCACACCGGTGTGCAGATTTTTCTGTCTTGCAGGTCACGTCTTCCCCCTCTCAAACAAATTTACCGTTGGTGGCACGTGAAGAGAACAAAAGGGCGATGGTTGTGAATGTGGGAGTTGTTCTTGATTTAAATAGTTTGGTTGGGAAGATGGCTTTGAGTTGCATCAATGCTTCGCTCTATGACTTCTATGCTTCTCATCCTCATCACACCACTACAATTCTCCTTCACATAAGACACTCTAAGGCTGATGCTGTGGGAGCTGCTGCACAAGGTGCTCCCAATGTAATGATGCTAGTAGTTTTGCGTTGTTGGATGTTTGCATATATAGATCATTTTGTGTTCAATGAAACAGCCATGGAGCTGATACAGGAAAGTGAAGTCGAAGCCATCTTGGGGCCGGAAAGATGGTTGGAAGCTCTATTCACTATGAAGGTGGCTGAGAAAGCTGAGGTTCCTATCATCTCCTTTGCACCAAAAATCTCCACTTCCTCTTATCTCAACTCTCCCTATTTCTTCAGAGTAGCCCAAAACCACTCCTCCCAAGTTCACGCCATTACCCACATCATCAAATCTTTCAGGTGGCAGCAAGTCGTTGCCATTTGCCAAGACGACGAATTTGGAAAGTGGGTCGTCGCGGATCTCACCAATGCTTTGCAGGACTCATACGTCCGTGTTCACCGGAGTGTCGTCGACCCGATGGCTTCCAGTGATCATATCAGAGAAGAGCTTTCCAGATTGGGCTTGATGCAAGCGAGTGTTTTTGTCGTCCACACGGAGCATAATCTGGCGTCTCGAGTTTTCGCCACGGCCAACGAACTTGGGATGATGAACGAAGGCTATGCTTGGATTCTAACGGACGCCACATCCAACGTGTTGAACACTTTGAATTCTTCAATTCTGAGCTCGATGCAGGGAGTTTTGGGAGTAAGGGCCTACGTCCCGAGGACAGTGGAGCTTCGGAACTTCATTTCTCGATGGAGAAGGAAATTCCGACAGGAGAATCCAAGCATTGATGACCCACGAGTGGATGTGCATGGACTGTGGGCTTACGATGCTGCTACGGCACTAGCCATGGCGGTTGAGAGAATTACGGCCAACTTCACTTCTGGGGTGTCTCGAAATGGTAAAAGAATCAGCGAGTCACTATCGGATTTGAAATTCAGAGGTCTTAGTGGGCAGTTTAATGTGATCAAAGGCCAGCTAGAGTCACCAAATTTGGAGATAGTGAATGTAATCGGAAATGGAGAAATTACAGTCGGATATTGGACGCCTGAAACGGGTCTGACCGGAGAATTTAACCGCCGGGAAAGTAATTTAAGAAGCATTATTTGGCCGGGATACTCTGTTAGAGTTCCCAAGGGATTAGGGAGTTGGTCAAATGCAAAGAAAAAGCTAAGGATTGGAGTTGTGTTGAATGATGAAGTTAGTGAATTTGCTGGAATTGTGAACGACTCCATGGCGGGATACTGCATAGACATGTTCGAAGCAGCTGTTGCAGAGCTTCCTTATGATATTTCGTATGAGTTTGTTCACTTCAGCAATACGTCGTCATCAGCTTCCTACGATAACTTGATCTTCCAGGTGTTTGAAGAGAAATATGATGCTGCAATTGGAGACATAACAATATTAGCAAACAGATCTTTGTATGTAGACTTCACTTTGCCATTCACCGAAGCTGGAATCGGTGCGGTGGTTCCTGTAAAACATAAATTGAGAAACCATGCATGGGTTTTCTTGAAGCCCTTGACTTTGGACCTTTGGATCGCGAGCTTCTGCTTCTTCATTTTCATGGCCTTCGTAGTTTGGATTCTTGAACACCGAAACCATCAACACTTTCGCGGCCCTCCGTCTCACCAAATCGGCACCGGTCTATGGTTCTCCTTCTGTACCATCGTTTTCGCACATTGGGAGACACTAGTGAGCAATCTGGCGAGGTTGGTGGTGGTGATATGGTTCTTCGTGGTATTCATTCTAACTCAAAGCTACACGGCGAGTTTAACGTCGTGGTTAACAGTACAACAACTCCAACCAGTCACCGACATGAATGAGATTATAGAAAAAGATTGGCATGTTGGATATCAAAACGGTTCTTATGTTTTGCATACATTGCAACTTATGGGCATTAAAAATTTGGTTCCCTATGTTTCATTAGAGCAACTGCAGGATCTGTTCACAAAAGGAAGCTGCAATGGCGGTATCGATGCCGTCATTGACGAGATCCCTTACATGAAGCTCTTTCTTTCCAAATATCATGATGACTACATCATGGCTGACTCTATGTTCAAGGGCAACGGTTTTGGATTTGCATTCCCATTAGGTTCATCTATAGTAGAAGACATGTCAAAGGCAATACTAAAGGTGAGTGAGAGTGATAAAATAAACCAAATACAAGAGAAATGGTTTGGGAAGAAAAACAGCCATCAATCATGCTGCAATAGCAGCAGCTGGGAGGACTCTTCTTCAAGCCTCGACCTCACTTACTTTTGGACCTTATTTCTCATCGCTGCTTCTGTGGCTATCTTCGCTCTCCTCCTCTATTTCCTTCGTTTCATCCGCACCCAAAGGCTCTCACTCCCTCGCATTTTCGCTGCCTGTGGCTCCTCCACTCTATGGAGAAGAATTGCCTCCACTTTCCATATTCAACCATCCACGGCGACGGCGGCAGCGGCGACGGCAGAGACGGCTGCCTCCACAACCAGCAATGATGAGTTTGGTGATTTGAGTCATCTAAGTCGAGCATCATCCTTGGAGATAATACACGGCTGA 2940 46.63 MQGAEEDNAISVQGDNQEMGPGEKTGQRVGPWPNPYGRPTRVGRVLPPPFASEAVWQAPHRCADFSVLQVTSSPSQTNLPLVAREENKRAMVVNVGVVLDLNSLVGKMALSCINASLYDFYASHPHHTTTILLHIRHSKADAVGAAAQGAPNVMMLVVLRCWMFAYIDHFVFNETAMELIQESEVEAILGPERWLEALFTMKVAEKAEVPIISFAPKISTSSYLNSPYFFRVAQNHSSQVHAITHIIKSFRWQQVVAICQDDEFGKWVVADLTNALQDSYVRVHRSVVDPMASSDHIREELSRLGLMQASVFVVHTEHNLASRVFATANELGMMNEGYAWILTDATSNVLNTLNSSILSSMQGVLGVRAYVPRTVELRNFISRWRRKFRQENPSIDDPRVDVHGLWAYDAATALAMAVERITANFTSGVSRNGKRISESLSDLKFRGLSGQFNVIKGQLESPNLEIVNVIGNGEITVGYWTPETGLTGEFNRRESNLRSIIWPGYSVRVPKGLGSWSNAKKKLRIGVVLNDEVSEFAGIVNDSMAGYCIDMFEAAVAELPYDISYEFVHFSNTSSSASYDNLIFQVFEEKYDAAIGDITILANRSLYVDFTLPFTEAGIGAVVPVKHKLRNHAWVFLKPLTLDLWIASFCFFIFMAFVVWILEHRNHQHFRGPPSHQIGTGLWFSFCTIVFAHWETLVSNLARLVVVIWFFVVFILTQSYTASLTSWLTVQQLQPVTDMNEIIEKDWHVGYQNGSYVLHTLQLMGIKNLVPYVSLEQLQDLFTKGSCNGGIDAVIDEIPYMKLFLSKYHDDYIMADSMFKGNGFGFAFPLGSSIVEDMSKAILKVSESDKINQIQEKWFGKKNSHQSCCNSSSWEDSSSSLDLTYFWTLFLIAASVAIFALLLYFLRFIRTQRLSLPRIFAACGSSTLWRRIASTFHIQPSTATAAAATAETAASTTSNDEFGDLSHLSRASSLEIIHG 979
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 37571813 37579324 + Maker00034025 Lcy13g1870 652175

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1870 979 Gene3D - 760 865 - -
Lcy13g1870 979 FunFam Glutamate receptor 518 632 - -
Lcy13g1870 979 FunFam Glutamate receptor 633 762 - -
Lcy13g1870 979 Gene3D - 522 633 - -
Lcy13g1870 979 Pfam Ligand-gated ion channel 642 894 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Lcy13g1870 979 SUPERFAMILY Periplasmic binding protein-like I 92 512 IPR028082 -
Lcy13g1870 979 SUPERFAMILY Periplasmic binding protein-like II 500 862 - -
Lcy13g1870 979 Gene3D - 236 401 - -
Lcy13g1870 979 Pfam Ligated ion channel L-glutamate- and glycine-binding site 541 624 IPR019594 GO:0015276(InterPro)|GO:0016020(InterPro)
Lcy13g1870 979 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 93 945 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Lcy13g1870 979 Gene3D - 408 521 - -
Lcy13g1870 979 MobiDBLite consensus disorder prediction 1 20 - -
Lcy13g1870 979 PIRSF IGluLR_plant 65 158 IPR017103 -
Lcy13g1870 979 PIRSF IGluLR_plant 163 973 IPR017103 -
Lcy13g1870 979 CDD GluR_Plant 521 859 - -
Lcy13g1870 979 CDD PBP1_GABAb_receptor_plant 94 487 IPR044440 -
Lcy13g1870 979 SMART GluR_14 522 861 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Lcy13g1870 979 Gene3D - 634 758 - -
Lcy13g1870 979 Pfam Receptor family ligand binding region 174 471 IPR001828 -
Lcy13g1870 979 FunFam Glutamate receptor 239 398 - -
Lcy13g1870 979 MobiDBLite consensus disorder prediction 1 40 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1870 K05387 - - csv:101205977 829.706
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1862 Lcy-Chr13:37529714 Lcy13g1870 Lcy-Chr13:37571813 1.81E-97 dispersed
Lcy13g1867 Lcy-Chr13:37560058 Lcy13g1870 Lcy-Chr13:37571813 2.49E-102 dispersed
Lcy13g1870 Lcy-Chr13:37571813 Lcy2g0238 Lcy-Chr2:1871773 2.14E-169 dispersed
Lcy13g1868 Lcy-Chr13:37562387 Lcy13g1870 Lcy-Chr13:37571813 1.28E-242 proximal
Lcy13g1869 Lcy-Chr13:37567774 Lcy13g1870 Lcy-Chr13:37571813 6.49E-33 tandem
Lcy13g0164 Lcy-Chr13:1705161 Lcy13g1870 Lcy-Chr13:37571813 1.76E-205 transposed
Lcy13g2055 Lcy-Chr13:39479879 Lcy13g1870 Lcy-Chr13:37571813 9.55E-300 transposed
Lcy13g2238 Lcy-Chr13:41285024 Lcy13g1870 Lcy-Chr13:37571813 5.03E-287 transposed
Lcy1g0561 Lcy-Chr1:4832537 Lcy13g1870 Lcy-Chr13:37571813 4.03E-16 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g633 . . . . . . . . . Cmo12g00333 . . . . Sed11g1121 . . Bhi04g00082 Tan02g2793 Cmetu03g1615 . Hepe10g0196 . Lcy13g1870 . . . . . . . . Cone7ag1636 . . . . . Cme03g01550 . . Bda01g01358 Bda13g01838 . . . Bma02g00574 . . . . Cma12g00381 . . . . . . . . . . . . . . . . . . Lsi08g01270 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000144 7 5 8 3 3 6 2 4 6 9 4 4 7 6 7 9 4 15 6 5 12 6 5 10 9 7 3 6 6 18 202