Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1876 ATGGCCACCAAGCAATTTCCACCAGCGAATGCAGATGAGAATGGTGGCTGCATACAGAGCTTGCAAATGGCTCCGGGAATCAAAGGGAGGAAGATCACTTGGATAAATAAAAATGGAATGTTGGGTTTTGTTCAATCCATTATTTTGAGCCAAAAAGAAACCAAAGAACCCTTTTACGTACTTGACCTAGGGCTCCTCATCAATCTCGTCCACAAGTGGGCTCGTGATCTTCCAATGATCAAGCCCTATTACGCCGTCAAGTGCAACCCTAATACTGCACTTCTCGGTGCCATGGCTGCCCTCGGCTCTAACTTCGACTGCTCCAGCCGAGCCGAGATCGAATCCGTCATGGCTCTCAGAGTGTCGTCCGACCGAATCATCTTCGCCAACCCATGCAAGGTGGAGTCGCACATCAAGTACGCCGCTAGCGTTGGCGTTAACTTGACCACTTTCGACTCCGTAGCTGAAGTGGAGAAGATCAAAAGATGCCACCCGAAATGCGCATTGTTGATCCGAATCAAAGCCAAGGACGACGGTACGGCCCGGTCTCCGTTGAGCTCCAAGTACGGTGCACTCCCGAGCGAGATAGAGCCACTCCTACCAGCCGCTCGAGTCTCGCAACTCGAAGTCGTCGGTGTTTCATTCCATATTGGAAGCGGAGGTAGCGACGCACGTGCTTATCATACCGCCATAGCTGTCGTCAGAGCAGTGTTTGACGCTACGGTTCGATTGGGGATGCCAAAGATGAAGGTGCTCAACATCATCAGAGGCGGCTTCACCGTCGGGCCGCATTTTGACACGGCCGCCGTGGCGATCAAAGAAGCAATGGAGGAGCATTTCTCCAAGGAAGAAGGGTTGATTGTCATGGCGGAGCCCGGGAGATTTTTTGCAGAGAAATTTGTCACGTGCACCCCATTGGCCATGACCTCAAACCCTAAAAATCCGACGTGTCGAAATTCTAAAGTGTACAGATCGACAGTGTTTGGACCGGCGTGTGATGCTTTCGATATAATTTCCACTGGTTACTGGCTACCGGATTTGGAGGTGGATGATTGGTTGTTGTTTCCTAACATGGGTGCCTACACGTCAGCAACTGGCTCCAACTTCAGCGGGTTTACCACCTCCTCCCTATCCACTAATCTTGTTTACTCAAATCCTTTTTGA 1164 50.77 MATKQFPPANADENGGCIQSLQMAPGIKGRKITWINKNGMLGFVQSIILSQKETKEPFYVLDLGLLINLVHKWARDLPMIKPYYAVKCNPNTALLGAMAALGSNFDCSSRAEIESVMALRVSSDRIIFANPCKVESHIKYAASVGVNLTTFDSVAEVEKIKRCHPKCALLIRIKAKDDGTARSPLSSKYGALPSEIEPLLPAARVSQLEVVGVSFHIGSGGSDARAYHTAIAVVRAVFDATVRLGMPKMKVLNIIRGGFTVGPHFDTAAVAIKEAMEEHFSKEEGLIVMAEPGRFFAEKFVTCTPLAMTSNPKNPTCRNSKVYRSTVFGPACDAFDIISTGYWLPDLEVDDWLLFPNMGAYTSATGSNFSGFTTSSLSTNLVYSNPF 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 37674201 37675563 + Maker00034182 Lcy13g1876 652181

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1876 387 FunFam Ornithine decarboxylase 66 296 - -
Lcy13g1876 387 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 84 102 IPR022653 -
Lcy13g1876 387 Gene3D Alanine racemase 64 296 IPR029066 -
Lcy13g1876 387 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 84 102 IPR000183 GO:0003824(InterPro)
Lcy13g1876 387 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 207 220 IPR000183 GO:0003824(InterPro)
Lcy13g1876 387 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 359 372 IPR000183 GO:0003824(InterPro)
Lcy13g1876 387 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 104 116 IPR000183 GO:0003824(InterPro)
Lcy13g1876 387 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 318 359 IPR022643 GO:0003824(InterPro)
Lcy13g1876 387 PRINTS Ornithine decarboxylase signature 56 80 IPR002433 GO:0006596(InterPro)
Lcy13g1876 387 PRINTS Ornithine decarboxylase signature 126 150 IPR002433 GO:0006596(InterPro)
Lcy13g1876 387 PRINTS Ornithine decarboxylase signature 346 359 IPR002433 GO:0006596(InterPro)
Lcy13g1876 387 PRINTS Ornithine decarboxylase signature 156 178 IPR002433 GO:0006596(InterPro)
Lcy13g1876 387 PRINTS Ornithine decarboxylase signature 326 336 IPR002433 GO:0006596(InterPro)
Lcy13g1876 387 PRINTS Ornithine decarboxylase signature 82 109 IPR002433 GO:0006596(InterPro)
Lcy13g1876 387 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 309 384 IPR009006 GO:0003824(InterPro)
Lcy13g1876 387 PANTHER ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE 310 379 IPR002433 GO:0004586(PANTHER)|GO:0005737(PANTHER)|GO:0006596(InterPro)|GO:0033387(PANTHER)
Lcy13g1876 387 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 53 302 IPR009006 GO:0003824(InterPro)
Lcy13g1876 387 CDD PLPDE_III_ODC 55 375 - -
Lcy13g1876 387 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 66 297 IPR022644 GO:0003824(InterPro)
Lcy13g1876 387 SUPERFAMILY PLP-binding barrel 62 297 IPR029066 -
Lcy13g1876 387 SUPERFAMILY Alanine racemase C-terminal domain-like 278 373 IPR009006 GO:0003824(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1876 K01581 - - vvi:100232922 437.958
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1876 Lcy-Chr13:37674201 Lcy13g1877 Lcy-Chr13:37686777 5.31E-156 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g89 . . . . . . . . Cmo05g00357 Cmo12g00620 . . . Car12g00661 . . Cpe07g00594 Bhi04g00092 . . . Hepe10g0189 . Lcy13g1876 Cla08g00938 Cam08g1385 Cec08g0966 Cco08g1088 Clacu08g1092 . Cre08g0875 . . Cone17ag1457 Cone20ag0020 . . . Cme03g01550 Blo17g00906 . . . . . . . . . . Cma12g00683 Cma05g00353 Car05g00298 . Cpe11g00783 . . . . . . . . . . . . . . . Lsi08g00780 . Chy03g01060 .