Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1878 ATGAACGGTCATGATGCGGAGCCGTTGGTGTACGTTCACGGCGACCTCGATTTGAAGATCATTGAGGCGCGCCGTTTGCCTAATATGGATTTGCTAACCGAGCGTATTCGGCGGTTTTTTACTGTTTTTACTTCTTGTCGGAAACCGTTTTCCAAGAAGGAAAGCGATCACCAGCACCACCGGAAGATTATTACTAGTGATCCTTATGTCACCGTTTGTCTTGCTGGAGCGACGGTTGCTCGGACGCGAGTTATTTCGAACTCGCAGAACCCTATCTGGAACGAGCACTTCAAAATTCCTCTTGCTCATCCGGTCTCGCAGGTGGAGTTTCACGTGAAGGATAATGATGTGTTTGGTGCGGATATGATTGGTATTGCTACGGTTCCTGCGCGCCGAATTCTTTCTGGCGAAACCATAAATGATTGGTTTCCGATTATTGGTTCGTTTGGGAAACCGCCGAAACCGGATTCGGCTGTGCGTTTGGAAATGAAATTCACGAAGTGTGAGGACAATCCTCTTTACCGGTATGGCATTGCCGCCGATCCCGAGCATTTCGGCGTTCGGGATTGCTACTTTCCGGTCCGGCACGGTGGTTCGGTAACGCTTTATCAGGACGCGCACGTTCCTGATTCCATGTTGGAGAAGATTGAAATGGATAAGGGGAATGCGTTTCCTCATGAGAATTGCTGGGAAGATATATGCCATGCAATTTTGGAGGCTCACCATTTAGTCTACATCGCCGGTTGGTCCATATATCATAAGGTGAAGCTGGTGAGAGAGCCTTCAAAGCCGTTGCCTAATGGTGGGAATTTGAACTTGGGAGAGTTGCTTAAGTACAAGTCACAAGAAGGGGTGCGAGTCTTGTTATTGGTTTGGGATGACAAGACTTCTCACAGCAAGTTCTTCATCAATACGACAGGAGTGATGCAGACTCATGATGAGGAGACCCGGAAGTTTTTCAAGCACTCTTCTGTGTCATGTGTGCTGTCACCCCGATATGCCAGCAGTAAGCTTAGCATTTTTAAGCAACAGGCACGCTTTATACCATGGTTCAGTTACATGTTGGTTGTTGGAACCCTTTTTACCCATCACCAGAAGTGCGTGATTGTGGATACACAAGCATCTGGAAATTACCGGAAGATAAGTGCTTTTATTGGAGGACTTGACCTTTGTGATGGTCGTTATGATACTCCTGAACATCGGTTGTTAAAAGATCTTGACACTGTATTTGAAGATGATTTTCATAATCCAACTTTTTCTGGAGGTACAAAGGGTCCTCGGCAGCCATGGCATGATTTACATTGCAAAATTGAAGGGCCTGCTGCATATGATGTGCTGACTAACTTTGAACAACGATGGCGAAAAGCCATAAAATGGTCTGCATTAGGTCAGCGGTTCAAAAGAGTGTCTCATTGGCATGAAGACGCTTTAATAAAGTTGGAACGCATATCTTGGATACTTAGTCCATCTCAGTCAGTCCCCAACGATGACCCTTTGTTATGGGTTTCCAAGGAAAATGATCCTGACAATTGGCATGTCCAGGTTTTCCGATCCATAGATTCAGGATCTTTGAAAGGATTTCCCAAAGATGTTTTTCAAGCTGAGTCGCAGAATCTTGTTTGTGCAAAAAATTTGGTTATTGACAAAAGCATTCAAACAGCATATATTCAAGCAATACGATCTGCCCAACACTTCATATACATTGAGAATCAATATTTTCTTGGATCATCGTTCGCATGGCCTTCATACAAAGAAGCAGGTGCTGATAATCTTATTCCTATGGAGTTAGCATTGAAGATCGCTAGTAAGATAAGAGCCAACGAGAGGTTTGCTGTATATGTTGTGATACCAATGTGGCCTGAAGGTGTTCCCACTTCTGTTTCTGTGCAAGAAATCCTGTTTTGGCAGGGCCAAACAATTCAAATGATGTATGAAGTCATTGCAAGAGAGTTGAAATATAAGAATCTCGAGAACGCTCATCCTTTGGACTACTTAAACTTTTACTGTCTTGGTAATAGGGAACCGCACGAGGATGTAACATGTTCCTCCGGTCATTCTTCCAAGAGCGAAGATATGGTTTCAGATTCGCAAAAGTTCCGAAGATTCATGATATATGTACATGCGAAAGGAATGGTTGTTGATGATGAATATGTAATAGTAGGGTCTGCAAATATTAATCAAAGATCAATGGCTGGTTCAAGGGACACTGAGATTGCCATGGGTGCATATCAACCCAGTAACACATGGGGTAAGAAGAAACGACATCCACAAGGCCAGATTTATGGCTACAGAATGTCGCTCTGGGCCGAACATTTGGGAAAGATTGATGGTTGCTTCAAGGAGCCTGAAAGCTTGAATTGTGTCAACACTGTCAACAAGATAGCTGAAGATAACTGGAAGAAATATACAGCAGCGGAATTTGCGCCGTTGCAAGGGCACCTGCTTAAGTACCCGATTGAGGTCAACCAATGTGGGAAGATTGGTCCGTTGAGTGGACACGAGACCTTCCCGGACGTCGGTGGTAAGGTCCTCGGAGCTCGATCAAACCTCCCTGATGCTCTTACTACATAA 2571 44.5 MNGHDAEPLVYVHGDLDLKIIEARRLPNMDLLTERIRRFFTVFTSCRKPFSKKESDHQHHRKIITSDPYVTVCLAGATVARTRVISNSQNPIWNEHFKIPLAHPVSQVEFHVKDNDVFGADMIGIATVPARRILSGETINDWFPIIGSFGKPPKPDSAVRLEMKFTKCEDNPLYRYGIAADPEHFGVRDCYFPVRHGGSVTLYQDAHVPDSMLEKIEMDKGNAFPHENCWEDICHAILEAHHLVYIAGWSIYHKVKLVREPSKPLPNGGNLNLGELLKYKSQEGVRVLLLVWDDKTSHSKFFINTTGVMQTHDEETRKFFKHSSVSCVLSPRYASSKLSIFKQQARFIPWFSYMLVVGTLFTHHQKCVIVDTQASGNYRKISAFIGGLDLCDGRYDTPEHRLLKDLDTVFEDDFHNPTFSGGTKGPRQPWHDLHCKIEGPAAYDVLTNFEQRWRKAIKWSALGQRFKRVSHWHEDALIKLERISWILSPSQSVPNDDPLLWVSKENDPDNWHVQVFRSIDSGSLKGFPKDVFQAESQNLVCAKNLVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSFAWPSYKEAGADNLIPMELALKIASKIRANERFAVYVVIPMWPEGVPTSVSVQEILFWQGQTIQMMYEVIARELKYKNLENAHPLDYLNFYCLGNREPHEDVTCSSGHSSKSEDMVSDSQKFRRFMIYVHAKGMVVDDEYVIVGSANINQRSMAGSRDTEIAMGAYQPSNTWGKKKRHPQGQIYGYRMSLWAEHLGKIDGCFKEPESLNCVNTVNKIAEDNWKKYTAAEFAPLQGHLLKYPIEVNQCGKIGPLSGHETFPDVGGKVLGARSNLPDALTT 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 37694548 37702035 - Maker00033970 Lcy13g1878 652183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1878 856 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 13 167 IPR035892 -
Lcy13g1878 856 SUPERFAMILY Phospholipase D/nuclease 548 773 - -
Lcy13g1878 856 CDD C2_plant_PLD 10 166 - -
Lcy13g1878 856 Gene3D C2 domain 12 173 IPR035892 -
Lcy13g1878 856 FunFam Phospholipase D delta 220 474 - -
Lcy13g1878 856 Pfam Phospholipase D C terminal 777 846 IPR024632 -
Lcy13g1878 856 Gene3D Endonuclease Chain A 527 749 - -
Lcy13g1878 856 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 702 729 IPR001736 GO:0003824(InterPro)
Lcy13g1878 856 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 359 394 IPR001736 GO:0003824(InterPro)
Lcy13g1878 856 PANTHER PHOSPHOLIPASE D 11 844 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Lcy13g1878 856 ProSiteProfiles C2 domain profile. 1 143 IPR000008 -
Lcy13g1878 856 PIRSF PLD_plant 1 856 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Lcy13g1878 856 SUPERFAMILY Phospholipase D/nuclease 225 465 - -
Lcy13g1878 856 Pfam Phospholipase D Active site motif 704 729 IPR001736 GO:0003824(InterPro)
Lcy13g1878 856 Gene3D Endonuclease Chain A 213 475 - -
Lcy13g1878 856 SMART pld_4 359 394 IPR001736 GO:0003824(InterPro)
Lcy13g1878 856 SMART pld_4 702 729 IPR001736 GO:0003824(InterPro)
Lcy13g1878 856 SMART C2_3c 15 142 IPR000008 -
Lcy13g1878 856 Pfam C2 domain 15 144 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1878 Lcy-Chr13:37694548 Lcy6g1997 Lcy-Chr6:42548569 1.65E-300 dispersed
Lcy13g0616 Lcy-Chr13:8158749 Lcy13g1878 Lcy-Chr13:37694548 7.85E-298 transposed
Lcy1g0587 Lcy-Chr1:4994397 Lcy13g1878 Lcy-Chr13:37694548 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1878 K01115 - csv:101213442 1625.53