Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1893 ATGTCTCTCTTCACATTTCTCCTCCTCTTTTCTTCCTTCCTTCCCTCTCTCAATGCCTTGAGCTACCACTACTACGACCACACCTGCCCCGATCTCGAGTCCATCGTCGCTCGAGAAGTCCACTTGGCCGCCGTTAACGACAAGACCGTCCCTGCTGCACTGCTCCGAATGCACTTCCATGACTGTTTCATTAGAGGTTGTGATGGCTCTGTACTTCTCGACTCCAAGGGAAAGAACACTGCTGAAAAAGATGGCCCTCCCAATATTTCGCTGCATGCTTTTTATGTCATCGACAATGCCAAGAAAGCCATTGAATCTGCCTGCCCTGGAGTCGTTTCTTGTGCTGATATCTTGGCCCTCGCTGCTCGAGATGCCGTTGCTTTGTCTGGAGGTCCCCATTGGCAAGTCCCAAAAGGAAGAAAAGATGGAAGAATCTCAAAAGCAACTGAAACCAGACAATTGCCTGCTCCCACATTCAACTTCTCTCAACTCCAACAAAGCTTCTCCCAAAGAGGACTTTCTATACAAGATCTCGTTGCTCTTTCAGGCGGCCACACGCTGGGGTTCGCCCATTGCTCGTCATTTCAAAACCGAATCCACAACTTCAACTCGACGCTCAACGTCGACCCGTCACTGCAGCTGTCGTTCGCGGCCAGCCTCCGGAGCATATGTCCGGCTCAGAACAAGGTGAAAAACGCAGGGTCCGCTATGGATTCAAGCTCCACAGTATTTGACAATGCATATTTCAAGCTGCTGCTTCAAGGGCAGAGCATTTTTTCTTCAGATCAATCTTTGCTTTCAACTCCCAAAACAAAGGCTTTGGTTTCGAAATTCGCCAATGAGCAACAGCTCTTTGAGAAGGCTTTTGTCAAGTCGATGGTCAAGATGAGTCGGATCGCCGGCGCCGGCGAAGAAGTCCGGCTGAACTGCAGGGTGGTCAGGTGA 945 50.16 MSLFTFLLLFSSFLPSLNALSYHYYDHTCPDLESIVAREVHLAAVNDKTVPAALLRMHFHDCFIRGCDGSVLLDSKGKNTAEKDGPPNISLHAFYVIDNAKKAIESACPGVVSCADILALAARDAVALSGGPHWQVPKGRKDGRISKATETRQLPAPTFNFSQLQQSFSQRGLSIQDLVALSGGHTLGFAHCSSFQNRIHNFNSTLNVDPSLQLSFAASLRSICPAQNKVKNAGSAMDSSSTVFDNAYFKLLLQGQSIFSSDQSLLSTPKTKALVSKFANEQQLFEKAFVKSMVKMSRIAGAGEEVRLNCRVVR 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 37882265 37883903 - Maker00033633 Lcy13g1893 652198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1893 314 Gene3D - 23 313 - -
Lcy13g1893 314 PANTHER PEROXIDASE 25-RELATED 21 310 IPR000823 GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Lcy13g1893 314 FunFam Peroxidase 155 296 - -
Lcy13g1893 314 PRINTS Plant peroxidase signature 130 145 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy13g1893 314 PRINTS Plant peroxidase signature 53 73 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy13g1893 314 PRINTS Plant peroxidase signature 92 105 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy13g1893 314 PRINTS Plant peroxidase signature 111 121 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy13g1893 314 PRINTS Plant peroxidase signature 251 268 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy13g1893 314 PRINTS Plant peroxidase signature 291 304 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy13g1893 314 PRINTS Plant peroxidase signature 29 48 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy13g1893 314 PRINTS Plant peroxidase signature 176 188 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy13g1893 314 PRINTS Plant peroxidase signature 235 250 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy13g1893 314 ProSiteProfiles Plant heme peroxidase family profile. 19 314 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy13g1893 314 SUPERFAMILY Heme-dependent peroxidases 20 313 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy13g1893 314 Gene3D Peroxidase, domain 2 155 296 - -
Lcy13g1893 314 CDD secretory_peroxidase 20 313 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lcy13g1893 314 ProSitePatterns Peroxidases proximal heme-ligand signature. 177 187 IPR019793 -
Lcy13g1893 314 FunFam Peroxidase 23 161 - -
Lcy13g1893 314 Pfam Peroxidase 38 280 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy13g1893 314 PRINTS Haem peroxidase superfamily signature 237 252 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy13g1893 314 PRINTS Haem peroxidase superfamily signature 51 65 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy13g1893 314 PRINTS Haem peroxidase superfamily signature 130 142 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy13g1893 314 PRINTS Haem peroxidase superfamily signature 112 129 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy13g1893 314 PRINTS Haem peroxidase superfamily signature 177 192 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1893 Lcy-Chr13:37882265 Lcy1g0670 Lcy-Chr1:5730655 1.33E-81 dispersed
Lcy1g0597 Lcy-Chr1:5097384 Lcy13g1893 Lcy-Chr13:37882265 1.18E-143 transposed
Lcy1g2770 Lcy-Chr1:55188595 Lcy13g1893 Lcy-Chr13:37882265 9.16E-74 transposed
Lcy6g0205 Lcy-Chr6:1839494 Lcy13g1893 Lcy-Chr13:37882265 6.84E-125 transposed
Lcy9g1912 Lcy-Chr9:44122367 Lcy13g1893 Lcy-Chr13:37882265 9.36E-33 transposed
Lcy1g0615 Lcy-Chr1:5275778 Lcy13g1893 Lcy-Chr13:37882265 3.78E-11 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1893 K00430 - csv:101214403 549.28