Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1894 ATGGCAAACCTTCCTTTGGCATTTGCTTTCTCTTTTGCTCTCTGCAACTTCTTCTTTGCTGCCAATGCATTTACCGCGTCGGGATGGAATCCCGCTCACGCTACCTTCTACGGCGAGAGCGATGCCTCGGGAACAATGGGCGGAGCTTGTGGGTACGGGAACTTGTACCAGACGGGGTACGGGACGAGGACGGCGGCGCTGAGCACGGCGCTGTTCAACGACGGAGCATCGTGCGGGCAGTGCTTCAAGATCATGTGCGATTACAAGACGGATCCACGGTGGTGCGTGAAAGGGACGTCGGTGACAGTGACGGCGACCAATTTCTGCCCACCCAACTTCGCTCTGCCGAACAACAATGGCGGATGGTGCAACCCTCCGCTCAAGCACTTCGACATGGCCCAGCCTGCTTGGGAGAAGATCGGCATTTACAGAGGCGGAATCATCCCTGTCCTCTACCAAAGAGTTCCTTGCGTAAAGAAAGGAGGAGTGAGATTCACAGTGAATGGAAGAGACTATTTTGAATTGGTATTGATAACCAATGTGGGAGGAGCTGGGGACATCCAATCAGTGTCCATCAAGGGCTCAAAATCCTCCAATTGGATGTCAATGTCAAGGAATTGGGGGGCCAATTGGCAATCCAATTCCTATCTAAATGGCCAATCTTTGTCCTTCAAGGTCACCACCACCGATGGCCAGACCCAAGTTTTCAACAATGTTGTCCCTTCAAGTTGGAGGTTTGGCCAAACATTTGCAACCAAAGTCCAATTCCGCTGA 774 52.2 MANLPLAFAFSFALCNFFFAANAFTASGWNPAHATFYGESDASGTMGGACGYGNLYQTGYGTRTAALSTALFNDGASCGQCFKIMCDYKTDPRWCVKGTSVTVTATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIIPVLYQRVPCVKKGGVRFTVNGRDYFELVLITNVGGAGDIQSVSIKGSKSSNWMSMSRNWGANWQSNSYLNGQSLSFKVTTTDGQTQVFNNVVPSSWRFGQTFATKVQFR 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 37887633 37891111 - Maker00033676 Lcy13g1894 652199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1894 257 SMART dpbb_1 64 152 IPR007112 -
Lcy13g1894 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 162 IPR007112 -
Lcy13g1894 257 PANTHER EXPANSIN-A15 13 253 IPR002963 GO:0009664(InterPro)
Lcy13g1894 257 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576(InterPro)
Lcy13g1894 257 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576(InterPro)
Lcy13g1894 257 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576(InterPro)
Lcy13g1894 257 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576(InterPro)
Lcy13g1894 257 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576(InterPro)
Lcy13g1894 257 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576(InterPro)
Lcy13g1894 257 CDD DPBB_EXPA_N 28 157 - -
Lcy13g1894 257 Gene3D - 162 257 IPR036749 -
Lcy13g1894 257 Pfam Expansin C-terminal domain 163 241 IPR007117 -
Lcy13g1894 257 FunFam Expansin 162 256 - -
Lcy13g1894 257 Pfam Lytic transglycolase 64 152 IPR009009 -
Lcy13g1894 257 Gene3D - 17 157 IPR036908 -
Lcy13g1894 257 FunFam Expansin 19 158 - -
Lcy13g1894 257 SUPERFAMILY Barwin-like endoglucanases 18 180 IPR036908 -
Lcy13g1894 257 PRINTS Expansin signature 209 230 IPR002963 GO:0009664(InterPro)
Lcy13g1894 257 PRINTS Expansin signature 101 111 IPR002963 GO:0009664(InterPro)
Lcy13g1894 257 PRINTS Expansin signature 59 73 IPR002963 GO:0009664(InterPro)
Lcy13g1894 257 PRINTS Expansin signature 238 254 IPR002963 GO:0009664(InterPro)
Lcy13g1894 257 PRINTS Expansin signature 88 99 IPR002963 GO:0009664(InterPro)
Lcy13g1894 257 PRINTS Expansin signature 120 137 IPR002963 GO:0009664(InterPro)
Lcy13g1894 257 PRINTS Expansin signature 137 150 IPR002963 GO:0009664(InterPro)
Lcy13g1894 257 PRINTS Expansin signature 161 173 IPR002963 GO:0009664(InterPro)
Lcy13g1894 257 PRINTS Expansin signature 173 194 IPR002963 GO:0009664(InterPro)
Lcy13g1894 257 SUPERFAMILY PHL pollen allergen 159 251 IPR036749 -
Lcy13g1894 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 252 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1894 Lcy-Chr13:37887633 Lcy7g1071 Lcy-Chr7:11465885 5.68E-119 dispersed
Lcy13g1894 Lcy-Chr13:37887633 Lcy7g0294 Lcy-Chr7:2530779 3.40E-121 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1894 - - - 0.0