Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1898 ATGAGTGCGTCCAGGTTTATAAAGTGCGTAACGGTTGGTGATGGTGCTGTGGGTAAAACCTGTATGTTGATTTCGTATACGAGCAACACCTTCCCCACGGACTACGTGCCTACGGTTTTTGACAATTTCAGTGCCAATGTGGTGGTTGATGGAAGCACTGTCAACCTAGGATTGTGGGATACTGCTGGTCAAGAGGATTACAATAGATTAAGACCACTGAGCTATCGAGGTGCTGATGTTTTTATTCTTGCTTTCTCTCTCATAAGCAAGGCCAGCTATGAAAATGTTGCTAAGAAGTGGATTCCTGAATTGAGACATTATGCACCTGGTGTTCCAATAGTTCTTGTTGGAACTAAACTTGATCTCCGGGATGACAAGCAGTTCTTTGAAAACCACCCTGGTGCAGTGCCCATTACCACTGTTCAGAATGTGAAAGGAGTGTTTGATGCAGCCATTAAAGTGGTGCTCCAACCACCGAAGTCTAAGAAGAAGAAGAAAAAGTCACAGAATGTCTGTTCCATCTTGTGA 528 43.94 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIVLVGTKLDLRDDKQFFENHPGAVPITTVQNVKGVFDAAIKVVLQPPKSKKKKKKSQNVCSIL 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 37923460 37927118 - Maker00033624 Lcy13g1898 652203

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1898 175 CDD Rop_like 6 156 - -
Lcy13g1898 175 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 155 IPR027417 -
Lcy13g1898 175 Gene3D - 5 170 IPR027417 -
Lcy13g1898 175 ProSiteProfiles small GTPase Rho family profile. 1 175 - -
Lcy13g1898 175 SMART ras_sub_4 4 158 - -
Lcy13g1898 175 FunFam Rho family GTPase 4 135 - -
Lcy13g1898 175 ProSiteProfiles small GTPase Ras family profile. 2 175 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy13g1898 175 SMART rho_sub_3 9 158 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy13g1898 175 SMART rab_sub_5 7 158 - -
Lcy13g1898 175 Pfam Ras family 8 127 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy13g1898 175 PANTHER RHO FAMILY GTPASE 5 130 IPR003578 GO:0003924(PANTHER)|GO:0005525(InterPro)|GO:0005525(PANTHER)|GO:0005856(PANTHER)|GO:0007163(PANTHER)|GO:0007264(InterPro)|GO:0008360(PANTHER)|GO:0019901(PANTHER)|GO:0030865(PANTHER)|GO:0031410(PANTHER)|GO:0032956(PANTHER)|GO:0042995(PANTHER)
Lcy13g1898 175 PRINTS Transforming protein P21 ras signature 7 28 - -
Lcy13g1898 175 PRINTS Transforming protein P21 ras signature 47 69 - -
Lcy13g1898 175 PRINTS Transforming protein P21 ras signature 30 46 - -
Lcy13g1898 175 PRINTS Transforming protein P21 ras signature 109 122 - -
Lcy13g1898 175 NCBIfam small GTP-binding protein domain 7 127 IPR005225 GO:0005525(InterPro)
Lcy13g1898 175 ProSiteProfiles small GTPase Rab1 family profile. 2 175 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1898 K04392 - - csv:101216083 310.071
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1807 Lcy-Chr11:41873215 Lcy13g1898 Lcy-Chr13:37923460 1.45E-57 dispersed
Lcy13g1898 Lcy-Chr13:37923460 Lcy1g0299 Lcy-Chr1:2669717 7.74E-102 dispersed
Lcy13g1898 Lcy-Chr13:37923460 Lcy8g1400 Lcy-Chr8:40672004 1.07E-103 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1147 Blo01g01606 . Bda01g00475 . Bpe02g00339 . . Bma01g02379 . Cmo12g00350 . . . . Sed02g0076 . Cpe07g00354 Bhi04g00124 Tan02g2834 Cmetu03g0402 . Hepe10g0168 . Lcy13g1898 Cla08g01409 Cam08g1889 Cec08g1466 Cco08g1599 Clacu08g1581 . Cre08g1364 Cone4ag2004 Cone7ag1901 Cone17ag1418 Cone20ag0065 . . . . . Blo18g00771 Bda08g01210 Bda01g01540 Bpe02g01737 Bpe05g00148 Bma01g00719 Bma05g00180 . . . Cma12g00399 Cma05g00318 . . Cpe11g00266 . . . . . . . . . . . . . . . Lsi08g01305 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000081 8 10 6 8 9 9 12 9 9 8 7 9 10 9 9 11 9 16 12 7 8 8 9 9 4 5 6 16 12 8 272