Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1906 ATGGGATTTCTTCAAACCCATTTTCTTTCTCCTCCTTCTTCTTCTTCTTCTTTTTTGTTTCTCTCTCTGCTTTTCATCATCTTCTTTAGAGGCGTTTTTGGAGCTGGATTTACGTTCGTAAACAGATGCGATTACACTGTTTGGCCGGGAATTCTCGGAAATACCCAATTGGACTCCACTGGATTTGAGCTCTCTCCGGGGGCGGCGCGTTCGTTCCACGCGCCGCCGGGTTGGTCCGGCAGATTCTGGGGCCGGACCGGGTGTTCGTTCGACCCCGCCACCGGTCAGGGCAGCTGCCAGACTGCGGACTGTGGGTCAAACCAAATGGAATGCAATGGCGCCGGAGCAACGCCGCCGGCAACTCTCGCAGAGTTCACGATCGGCGCCGGCGCCGGAGCGCAGGACTTTTATGACGTTAGTTTGGTCGACGGCTACAACATTCCGATGGTCGTCGACGCCACGGGTGGGAGTGGCGGGTGTCAGTCCACTGGGTGCGCGGCGGACCTGAACCGGCGGTGCCCGGCGGAGCTGCGTGCAGGCGATGGGAAGGCGTGCAAGAGCGCGTGTGGGGCGTTTGGGAACCCGGAGTACTGCTGCAAGGGCGCGTATAACTCACCCGCCGCCTGTAAGCCGTCGGCGTACTCGGAAATGTTCAAATCGGCTTGCCCGAAATCTTATAGCTACGCCTTTGATGACGCAACAAGCACTTTTACTTGCAGTGGAGCTGATTACACCATTACATTCTGCCCTTCATCCACAAGGTAA 765 56.99 MGFLQTHFLSPPSSSSSFLFLSLLFIIFFRGVFGAGFTFVNRCDYTVWPGILGNTQLDSTGFELSPGAARSFHAPPGWSGRFWGRTGCSFDPATGQGSCQTADCGSNQMECNGAGATPPATLAEFTIGAGAGAQDFYDVSLVDGYNIPMVVDATGGSGGCQSTGCAADLNRRCPAELRAGDGKACKSACGAFGNPEYCCKGAYNSPAACKPSAYSEMFKSACPKSYSYAFDDATSTFTCSGADYTITFCPSSTR 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 38004040 38005061 - Maker00033701 Lcy13g1906 652211

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1906 254 PANTHER OS03G0233200 PROTEIN 22 250 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Lcy13g1906 254 Pfam Thaumatin family 41 250 IPR001938 -
Lcy13g1906 254 CDD TLP-PA 37 249 - -
Lcy13g1906 254 FunFam THAUMATIN-LIKE PROTEIN 1 35 250 - -
Lcy13g1906 254 PIRSF PR5 3 254 IPR001938 -
Lcy13g1906 254 SMART tha2 37 250 IPR001938 -
Lcy13g1906 254 SUPERFAMILY Osmotin, thaumatin-like protein 37 251 IPR037176 -
Lcy13g1906 254 Gene3D Thaumatin 35 250 IPR037176 -
Lcy13g1906 254 PRINTS Pathogenesis-related protein signature 36 48 IPR001938 -
Lcy13g1906 254 PRINTS Pathogenesis-related protein signature 240 249 IPR001938 -
Lcy13g1906 254 PRINTS Pathogenesis-related protein signature 60 69 IPR001938 -
Lcy13g1906 254 PRINTS Pathogenesis-related protein signature 135 151 IPR001938 -
Lcy13g1906 254 PRINTS Pathogenesis-related protein signature 81 92 IPR001938 -
Lcy13g1906 254 ProSiteProfiles Thaumatin family profile. 34 250 IPR001938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1906 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1906 Lcy-Chr13:38004040 Lcy6g2310 Lcy-Chr6:47858166 2.05E-121 dispersed
Lcy13g1906 Lcy-Chr13:38004040 Lcy13g1907 Lcy-Chr13:38017119 8.56E-90 tandem
Lcy1g0624 Lcy-Chr1:5344388 Lcy13g1906 Lcy-Chr13:38004040 3.22E-123 wgd
Lcy13g1906 Lcy-Chr13:38004040 Lcy9g2273 Lcy-Chr9:47171367 3.55E-90 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1131 . Blo12g00882 . . . Bpe04g00250 . Bma01g02374 Cmo05g00315 . . Cma09g00098 . . . Cpe06g00061 . Bhi04g00140 Tan02g2082 . . Hepe10g0674 . Lcy13g1906 Cla08g01416 . Cec08g1472 Cco08g1605 Clacu08g1587 . Cre08g1370 . . Cone17ag1411 . Lsi04g01754 Csa03g04288 Chy04g00408 Cme03g01872 . . . . Bpe02g01730 Bpe05g00142 . Bma05g00168 Sed01g2481 . Cmo09g00095 Cma12g00403 Cma05g00313 Car05g00260 . Cpe11g00261 . Bhi09g02077 Tan01g5034 Cmetu04g3133 . Hepe01g1607 Mch11g0107 . Cla05g01863 Cam05g1992 Cec05g2004 Cco05g2062 Clacu05g1984 Cmu05g1865 Cre05g1989 Lsi08g01311 Csa02g02142 Chy03g01376 Cme04g00460
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000476 2 3 3 3 2 4 4 4 4 5 4 4 6 4 4 5 4 4 4 4 4 4 4 4 4 4 3 5 4 3 116