Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1907 ATGAAGACTGGAATGGAATTGAGAGGAAACCCCCAACTCGTCTTCACGCTTCCCAATATCTCCTTTAACCGCCGTAAGAATAAAGAATATTTCCCTGCAACTCCATCTCCCAATTCCTCTGCCCCACCACTTCTAGCCGTTGCCCATTCCCATTTCTATAAATACCCTTCCCTCTCCATTCCCCCTTTTTTGCTCCGCTCCTTTTCCCCTTCGCCGGAGAATTTTCTTCTCCGGTCACTGTCGTTCTGCTCTGCCGGCTCTCTGTTTCTCTTTCCTCAAGGTCCTCTGTTCGGCTCCAATGGCGGCACGGGTTTCGTTTCTGTTGGGTCTTTCAACTCTGCTGCTGTTGGTTCCAGGTCTGTGGCGATGGAGCTTGCTAATTTGATGATTGATTCTGATTTTGACTGTTTTTTGTTCTGTCGGGTTATTGATTTGTTGTGCTCTGTTTTTGGATTTTCAGGTGGGTTTTCGACGAGCTTCACTTTTGTCAACAAATGTGGATTCCCAGTCTGGCCGGGCGTTCTGTCGAACGGCGGCGTTCCGCCGCTTCCCACCACCGGCTTCTCTCTCCAGACGGGAGAGTCCAAGACGCTGCCGGCGCCGGCGTCATGGGGTGGCAGGTTCTGGGGACGAACACTCTGTTCCGAAGATTCCACCGGGAAATTCACTTGCGCCACCGGTGACTGTGGCTCCAACAAACTCGAGTGCGCCGGAAATGGAGCGACGCCGCCGGCGACTCTGGCGGAATTTACTCTCGACGGCTCCGGCGGGCTCGATTTCTTCGACGTTAGCCTGGTGGACGGTTACAATCTTCCGATGATGGTGGTGCCTCAGGGTGGCTCAGGCGACAACTGCACCAGTACCGGCTGCGTGGTGGATCTGAACGGCGCGTGTCCGTCGGAGCTACGCGTGACGAGCGCCGACGGAAGAGAGGGCGTCGCGTGTAAAAGCGCGTGTGATGCGTTCAACCAACCGCAGTATTGTTGCACTGGCGCGTATCAGACACCGGACACCTGTCAGCCGTCGATGTACTCTCAGATCTTCAAGAGAGCGTGCCCACGCGCTTATAGCTACGCGTACGACGACAAGACGAGCACTTTCACATGCGCCAGTGCTGATTACGTCATCACCTTCTGTCCATCGCCAAACACCAGCCAAAAGTCATCGGAATCACAGAACTCACCGGCGACGGCGAACCCATCTACCGGCGGCGACGGAGCAATGGTGTACGAAGGCGCATCTCTGATCCAAACCGACGAAGCGCCGCCACGTGTGGCCGGAATTTCAGCGGCCGTTGCGGTGGCGATTTGGTGGTTGTGGCAGGAGCTGTTCCTCTACTTCTAA 1344 55.43 MKTGMELRGNPQLVFTLPNISFNRRKNKEYFPATPSPNSSAPPLLAVAHSHFYKYPSLSIPPFLLRSFSPSPENFLLRSLSFCSAGSLFLFPQGPLFGSNGGTGFVSVGSFNSAAVGSRSVAMELANLMIDSDFDCFLFCRVIDLLCSVFGFSGGFSTSFTFVNKCGFPVWPGVLSNGGVPPLPTTGFSLQTGESKTLPAPASWGGRFWGRTLCSEDSTGKFTCATGDCGSNKLECAGNGATPPATLAEFTLDGSGGLDFFDVSLVDGYNLPMMVVPQGGSGDNCTSTGCVVDLNGACPSELRVTSADGREGVACKSACDAFNQPQYCCTGAYQTPDTCQPSMYSQIFKRACPRAYSYAYDDKTSTFTCASADYVITFCPSPNTSQKSSESQNSPATANPSTGGDGAMVYEGASLIQTDEAPPRVAGISAAVAVAIWWLWQELFLYF 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 38017119 38020365 - Maker00033724 Lcy13g1907 652212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1907 447 PRINTS Pathogenesis-related protein signature 159 171 IPR001938 -
Lcy13g1907 447 PRINTS Pathogenesis-related protein signature 207 218 IPR001938 -
Lcy13g1907 447 PRINTS Pathogenesis-related protein signature 370 379 IPR001938 -
Lcy13g1907 447 PRINTS Pathogenesis-related protein signature 259 275 IPR001938 -
Lcy13g1907 447 SMART tha2 160 380 IPR001938 -
Lcy13g1907 447 ProSiteProfiles Thaumatin family profile. 157 380 IPR001938 -
Lcy13g1907 447 PANTHER OS03G0233200 PROTEIN 154 380 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Lcy13g1907 447 MobiDBLite consensus disorder prediction 383 403 - -
Lcy13g1907 447 SUPERFAMILY Osmotin, thaumatin-like protein 159 381 IPR037176 -
Lcy13g1907 447 CDD TLP-PA 159 379 - -
Lcy13g1907 447 MobiDBLite consensus disorder prediction 383 401 - -
Lcy13g1907 447 Gene3D Thaumatin 158 380 IPR037176 -
Lcy13g1907 447 Pfam Thaumatin family 164 380 IPR001938 -
Lcy13g1907 447 FunFam THAUMATIN-LIKE PROTEIN 1 158 380 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1907 Lcy-Chr13:38017119 Lcy9g2273 Lcy-Chr9:47171367 1.83E-147 dispersed
Lcy13g1906 Lcy-Chr13:38004040 Lcy13g1907 Lcy-Chr13:38017119 8.56E-90 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1907 - - - 0.0