Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1909 ATGAGAGAGATTCTTCACGTTCAAGGTGGCCAATGCGGCAACCAAATCGGATCCAAGTTCTGGGAAGTCATCTGCGATGAGCACGGTATCGACGCCACCGGAAAATACAACGGCGATCCTTCCTCCGATCTTCAACTCGAGAGGATCAATGTCTATTACAATGAGGCTTCTGGCGGTAGGTACGTTCCCAGGGCTGTTCTCATGGATCTTGAGCCCGGTACCATGGATAGTATCAGATCCGGCCCCTACGGTCAGATCTTTCGCCCCGATAATTTCGTTTTTGGCCAGTCCGGTGCCGGAAATAATTGGGCGAAGGGACATTACACCGAAGGAGCGGAGTTGATCGATTCTGTTCTTGATGTTGTTCGTAAGGAGGCCGAGAACTGTGATTGCTTGCAAGGTATGGCGTTCTCTGCTCTGTTCTTCATTCTTCGATTATACGTTCTGATTATATTGCTTTGTGAATTGAAGAAATCGCTTGAGAAATCAACTGTTCTGATTTCCTTGTTTTCTACTATTGCAGAACTTGTCGATCCTGATCTTGATTTGCTAACTGCTAAATCTTCTCGCCATTTCCTGCCTCTGCACTCTAATTGCAACTTTTTTCCGACTTTTAAATTGGTCAACTTTGCTTGTGGGCCAGGTTTTCAGGTTTGTCACTCCCTTGGAGGAGGCACTGGTTCTGGCATGGGAACCCTCTTGATCTCGAAGATTAGAGAGGAATATCCGGACAGGATGATGCTCACATTCTCCGTTTTCCCTTCTCCCAAGGTCTCAGACACGGTTGTGGAACCATATAATGCCACTCTTTCAGTTCACCAACTGGTTGAGAATGCAGATGAATGCATGGTCCTTGATAATGAAGCTCTTTATGACATTTGCTTCAGGACCTTAAAGCTCAGCACTCCTAGCTTCGGTGACCTGAATCATTTGATCTCTGCGACCATGAGCGGAGTGACATGTTGCTTGAGATTCCCAGGTCAACTGAACTCAGACCTGAGGAAATTGGCAGTGAATCTGATCCCATTTCCCCGTCTTCACTTCTTCATGGTGGGATTTGCCCCTCTCACCTCCCGTGGCTCCCAGCAGTACATCTCCCTCACCGTCCCAGAGCTGACCCAGCAAATGTGGGACGCCAAGAACATGATGTGCGCCGCCGACCCCCGCCACGGCCGGTACCTGACGGCCTCCGCCATGTTCAGAGGAAGAATGAGCACCAAAGAAGTGGACGAACAGATGATCAATGTGCAGAACAAAAACTCATCCTACTTCGTGGAGTGGATCCCCAACAACGTGAAGTCAAGTGTTTGTGACATTCCTCCAAAGGGCCTGAAAATGGCGTCGACATTTGTTGGAAACTCGACCTCCATTCAGGAGATGTTCAGGAGGGTGAGCGAGCAGTTCACAGCCATGTTTAGGCGCAAGGCTTTTCTGCATTGGTACACAGGTGAAGGAATGGACGAAATGGAGTTCACAGAGGCTGAGAGTAATATGAACGACTTGGTTGCTGAGTATCAGCAGTATCAGGACGCCACTGTTGATGATGATGCTGAATTTGAAGATCGTGAAGACGAGTATGCCGAACAGTAA 1590 48.43 MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGMAFSALFFILRLYVLIILLCELKKSLEKSTVLISLFSTIAELVDPDLDLLTAKSSRHFLPLHSNCNFFPTFKLVNFACGPGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGRMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATVDDDAEFEDREDEYAEQ 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 38048520 38052418 + Maker00033651 Lcy13g1909 652214

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1909 529 FunFam tubulin beta-4A chain isoform X5 1 138 - -
Lcy13g1909 529 SMART Tubulin_4 49 327 IPR003008 GO:0005525(InterPro)
Lcy13g1909 529 SMART Tubulin_C_4 329 466 IPR018316 -
Lcy13g1909 529 FunFam Tubulin beta class I 230 346 - -
Lcy13g1909 529 Gene3D Tubulin/FtsZ, GTPase domain 1 345 IPR036525 -
Lcy13g1909 529 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 136 IPR036525 -
Lcy13g1909 529 Pfam Tubulin C-terminal domain 344 465 IPR018316 -
Lcy13g1909 529 SUPERFAMILY Tubulin nucleotide-binding domain-like 214 326 IPR036525 -
Lcy13g1909 529 Pfam Tubulin/FtsZ family, GTPase domain 3 137 IPR003008 GO:0005525(InterPro)
Lcy13g1909 529 Pfam Tubulin/FtsZ family, GTPase domain 215 294 IPR003008 GO:0005525(InterPro)
Lcy13g1909 529 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874(InterPro)|GO:0007017(InterPro)
Lcy13g1909 529 PRINTS Tubulin signature 95 106 IPR000217 GO:0005874(InterPro)|GO:0007017(InterPro)
Lcy13g1909 529 PRINTS Tubulin signature 108 132 IPR000217 GO:0005874(InterPro)|GO:0007017(InterPro)
Lcy13g1909 529 PRINTS Tubulin signature 53 72 IPR000217 GO:0005874(InterPro)|GO:0007017(InterPro)
Lcy13g1909 529 Gene3D - 346 456 IPR037103 -
Lcy13g1909 529 ProSitePatterns Tubulin-beta mRNA autoregulation signal. 1 4 IPR013838 -
Lcy13g1909 529 PANTHER TUBULIN 211 508 IPR000217 GO:0000226(PANTHER)|GO:0000278(PANTHER)|GO:0005200(PANTHER)|GO:0005525(PANTHER)|GO:0005737(PANTHER)|GO:0005874(PANTHER)|GO:0005874(InterPro)|GO:0007017(InterPro)
Lcy13g1909 529 Coils Coil 491 511 - -
Lcy13g1909 529 FunFam Tubulin beta chain 457 518 - -
Lcy13g1909 529 Gene3D Helix hairpin bin 457 513 IPR023123 -
Lcy13g1909 529 PRINTS Beta-tubulin signature 43 60 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Lcy13g1909 529 PRINTS Beta-tubulin signature 90 101 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Lcy13g1909 529 PRINTS Beta-tubulin signature 110 128 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Lcy13g1909 529 FunFam Tubulin beta chain 347 456 - -
Lcy13g1909 529 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 223 229 IPR017975 GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Lcy13g1909 529 CDD beta_tubulin 2 509 - -
Lcy13g1909 529 SUPERFAMILY Tubulin C-terminal domain-like 327 512 IPR008280 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1909 K07375 - - csv:101204817 620.157
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1909 Lcy-Chr13:38048520 Lcy5g2382 Lcy-Chr5:46622517 4.14E-170 dispersed
Lcy13g1909 Lcy-Chr13:38048520 Lcy4g0153 Lcy-Chr4:1981037 1.32E-114 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1117 . . Bda01g00482 . Bpe02g00346 . Bma04g00249 . . . . . . . Sed08g2609 . Cpe07g00363 Bhi04g00145 Tan02g2079 Cmetu03g2170 . Hepe10g0157 . Lcy13g1909 Cla08g01419 Cam08g1899 Cec08g1475 Cco08g1608 Clacu08g1590 . Cre08g1374 . . . . . . . Cme03g01875 Blo17g00745 . . Bda01g01531 Bpe02g01727 . . . . . . Cma12g00406 . . . . . . . . . . . . . . . . . . . Lsi08g01314 . Chy03g01381 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000127 7 8 7 13 9 7 3 7 7 7 7 7 11 7 7 12 6 15 3 7 7 7 6 8 1 6 8 9 9 2 220