Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1920 ATGTCCAACGCCGTCGAAGATCTCCTCCTCCGTCACCGCCACTCCGACTTCCGATTTCAACTCCTTCGCTCTCACTCTCTCCATCGCTACATGTCGTCTTCGTCTTCTTCTTCTTCTCCTGCAGCTCAACCTATTCCTCCGTGTTTCCTTCAGTATCATCGCCCTTCTCCGCCGTCGGATCAATCCAACGCATGCGACGGCCGTCTCGCTCCCGACGCACATTCTACAGTTGCTACGCTCGACCTGAAACGAACATATGATATCAATGACTCTGAGGCTTCGGCTAGTAGACGAGCTATAGCTTCTGAACAGAGGATGCGATCTAATGATTCTTCCTGTGAACAAGTATCTAGTGCAAATGAAAAGCAAAACAAAAAATTGAAGTTGCAGAAAAATTCAAAGTCTAAAACTCAAAAATCAATAGATGAGCCGCTTGATGGTCCTAATCTATCTACTAACGGTCGGTACGACAGCTCGTTAGGCTTCTTGACAAAAAAATTTATCAGGTTAGTTCAGGAGGCTGAGGATGGAACACTTGATCTAAATAAAACTGCAGACGTATTAAAGGTCCAAAAGAGGAGGATTTACGACATTACGAATGTTCTCGAAGGGATAGGGCTTATTGAGAAAACCACGACGAACCACATACGTTGGAAGGGATGCGAGAGGCGTGGACCTCAAGAGCTCAACGATCAAGTTGGTAGATTAAAGGCTGAAGTTAAAAGTTTATATGCAGATGAACGCAGACTTGATGAACTTATAAGGATGAAGCAAGAACTTCTGAGAAATCTCGAGGAAAATGCAAAGCACAGAAAGAACCTTTTTATAACAGAAGAAGATATCTTGCAAATTCCTTGCTTCAAGAATCAGACACTCATAGCAGTTAAAGCCCCCCAAGCTAGCTGTATTGAAGTGCCCGATCCGGATGAGGAGGCTTGTTTTTCTGAGAGGCAGTGTAGATTGATCATCAAAAGCACCACTGGCCCAATAGATTTGTACCTCTTGAGGACTGAAAAACAAGGGTTGGAAGAAAACACCACCAAGCAAGGGAAAATGTCTTCAGAACAGAATAAGAATCCTATGACATCTACCAACAATGCTTGTTCTTCTCTCCGGGAAGTTCATGGAATGCAGAGAATTTTACCTTTACATAATAATGTAGACGATGATTATTGGTTTCAATCAAATTCTCAAGTGAGTATTACACATTTATGGGGTGAAGAACACAACTTTTGA 1236 42.8 MSNAVEDLLLRHRHSDFRFQLLRSHSLHRYMSSSSSSSSPAAQPIPPCFLQYHRPSPPSDQSNACDGRLAPDAHSTVATLDLKRTYDINDSEASASRRAIASEQRMRSNDSSCEQVSSANEKQNKKLKLQKNSKSKTQKSIDEPLDGPNLSTNGRYDSSLGFLTKKFIRLVQEAEDGTLDLNKTADVLKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQELNDQVGRLKAEVKSLYADERRLDELIRMKQELLRNLEENAKHRKNLFITEEDILQIPCFKNQTLIAVKAPQASCIEVPDPDEEACFSERQCRLIIKSTTGPIDLYLLRTEKQGLEENTTKQGKMSSEQNKNPMTSTNNACSSLREVHGMQRILPLHNNVDDDYWFQSNSQVSITHLWGEEHNF 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 38151692 38156130 + Maker00033672 Lcy13g1920 652225

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1920 411 Gene3D - 227 338 - -
Lcy13g1920 411 PANTHER TRANSCRIPTION FACTOR E2F 79 406 IPR015633 GO:0000978(InterPro)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Lcy13g1920 411 SUPERFAMILY E2F-DP heterodimerization region 232 336 IPR037241 -
Lcy13g1920 411 Coils Coil 247 270 - -
Lcy13g1920 411 CDD E2F_DD 231 338 IPR032198 GO:0046983(InterPro)
Lcy13g1920 411 MobiDBLite consensus disorder prediction 92 154 - -
Lcy13g1920 411 Pfam E2F/DP family winged-helix DNA-binding domain 157 220 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Lcy13g1920 411 MobiDBLite consensus disorder prediction 343 364 - -
Lcy13g1920 411 Gene3D - 150 222 IPR036388 -
Lcy13g1920 411 SMART E2F_TDP_2 155 220 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Lcy13g1920 411 MobiDBLite consensus disorder prediction 346 364 - -
Lcy13g1920 411 Pfam E2F transcription factor CC-MB domain 236 335 IPR032198 GO:0046983(InterPro)
Lcy13g1920 411 SUPERFAMILY Winged helix DNA-binding domain 155 218 IPR036390 -
Lcy13g1920 411 FunFam E2F transcription factor 1 149 222 - -
Lcy13g1920 411 MobiDBLite consensus disorder prediction 95 123 - -
Lcy13g1920 411 MobiDBLite consensus disorder prediction 31 69 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1920 K06620 - - csv:101211469 641.728
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1920 Lcy-Chr13:38151692 Lcy1g1215 Lcy-Chr1:11493559 6.88E-62 dispersed
Lcy13g1920 Lcy-Chr13:38151692 Lcy8g2016 Lcy-Chr8:46386394 2.22E-63 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1096 . . . . . . . . Cmo05g00304 Cmo12g00363 . . . Car12g00390 Sed03g1691 . Cpe07g00370 Bhi04g00158 Tan02g2064 Cmetu03g0122 . Hepe10g0142 . Lcy13g1920 Cla08g01431 Cam08g1910 Cec08g1486 . Clacu08g1601 . Cre08g1386 . . . . . . . Cme03g01889 . . . . . . . . . . . Cma12g00412 Cma05g00301 Car05g00249 . Cpe11g00250 . . . . . . . . . . . . . . . Lsi08g01330 Csa02g02126 Chy03g01393 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012017 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19423 None None None None Lcy TF