Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1930 ATGTCGTCAGTCTTCAGCGGCGATGAAACAGCGCCTTTCTTTGGCTTTCTCGGCGCCGCTGCGGCCCTGGTTTTCTCCTGTATGGGAGCCGCTTACGGGACGGCGAAGAGCGGGGTCGGAGTGGCGTCAATGGGAGTGATGAGGCCGGAATTGGTGATGAAGTCGATTGTTCCGGTGGTTATGGCGGGAGTTTTGGGTATTTATGGTTTGATTATTGCTGTGATTATTAGTACAGGGATTAACCCTAAGGCTAAATCTTATTACCTCTTCGATGGCTACGCGCATCTCTCCTCTGGTCTTGCTTGCGGCCTCGCCGGGCTCTCGGCTGGCATGGCTATCGGCATCGTCGGCGATGCCGGCGTTAGGGCCAATGCACAACAGCCTAAACTTTTTGTTGGGATGATTCTCATTCTGATTTTCGCCGAAGCACTTGCCCTTTATGGACTCATTGTTGGTATTATTCTCTCCTCCCGAGCTGGTCAGTCGAGAGCTGATTAA 498 52.61 MSSVFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 38308102 38309795 + Maker00033703 Lcy13g1930 652235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1930 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 4 159 - GO:0016021(PANTHER)
Lcy13g1930 165 Pfam ATP synthase subunit C 17 76 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Lcy13g1930 165 Pfam ATP synthase subunit C 97 155 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Lcy13g1930 165 CDD ATP-synt_Vo_c_ATP6C_rpt2 89 156 - -
Lcy13g1930 165 FunFam V-type proton ATPase proteolipid subunit 11 162 - -
Lcy13g1930 165 SUPERFAMILY F1F0 ATP synthase subunit C 13 77 IPR035921 -
Lcy13g1930 165 CDD ATP-synt_Vo_c_ATP6C_rpt1 13 80 - -
Lcy13g1930 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 134 157 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Lcy13g1930 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 133 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Lcy13g1930 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 56 80 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Lcy13g1930 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 30 54 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Lcy13g1930 165 SUPERFAMILY F1F0 ATP synthase subunit C 87 156 IPR035921 -
Lcy13g1930 165 Gene3D - 11 162 IPR035921 -
Lcy13g1930 165 NCBIfam V-type ATPase subunit C 13 121 IPR011555 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1930 Lcy-Chr13:38308102 Lcy9g1569 Lcy-Chr9:40895767 2.13E-78 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1930 K02155 - csv:101209079 286.96