Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1934 ATGAAGATTCAATGTGATGTCTGTGAAAAAGGCGATGCGTCGGTGTTCTGCACGGCTGACGAGGCGGCGCTCTGTAATCTCTGTGATCACCGTGTCCACCATGCCAATAAGCTCGCTTCGAAGCACCGACGGTTTTCTCTGCTCCGCCCTGCCGCGGCGGAGGCCCCTGTCTGCGATGTGTGCCGGGAGCGGCGAGGGTTCTTGTTCTGTCAGCAGGATAGGGCGATTCTGTGTAGAGAGTGCGATGATCCAATTCATTCGGCTAATGAACTCACTATGAAGCATGATAGGTTTCTTCTAACCGGGATTAAGCTTTCCGCCACCGCTGCTCTGTACGTGCCGCCTCCCTCCGACGAGAAACCGATCGGAACTGGTGGTCGTGTTGGGTCTGATCTCAAGTCAAAGGGTTCTGTCAAGAAGGCAGCTGCTGTTTCTGCTGCCCCAACTGGATGCACACCAAGTGTTTGCGTTAATGGCCCAACGAACATACCTCCGGCGGAAGCCGTGAACAAGGGCGGCGGAGGTCAGATTCCGACCGGTGGAGGTGGCTTGGCCAGCAGCATATCGGAATATTTGATGGAGACGCTTCCTGGGTGGCACTTTGAAGACTTTCTTGATTCCTCTGTTCCTCCCCCTTTTGTGGAGTGTGAAGGGCTGGGATTGCCATTTGTGGAAGGTGATTTTAATGGTGGTTTTTCACCATCGGAGTGTTTGGAGCTTTGGGTCCCTCAGGGGCCACCACCGGCGCTGTATGGTTCAGGATTAATGATGAATAATGGGTTGAAGTTGAAGGACACAAAGGAATTGGTAGCAAATCTAAATTCATCAAAAGTCAATAGAGTGTGGACAGATGATGGTTTCACTGTGCCACAGATCACAAGTACTACTACCCCATCTGCAGGCTTTAAGAGATCCAGACCTTTTTGGTATAACAATAACTAA 942 51.38 MKIQCDVCEKGDASVFCTADEAALCNLCDHRVHHANKLASKHRRFSLLRPAAAEAPVCDVCRERRGFLFCQQDRAILCRECDDPIHSANELTMKHDRFLLTGIKLSATAALYVPPPSDEKPIGTGGRVGSDLKSKGSVKKAAAVSAAPTGCTPSVCVNGPTNIPPAEAVNKGGGGQIPTGGGGLASSISEYLMETLPGWHFEDFLDSSVPPPFVECEGLGLPFVEGDFNGGFSPSECLELWVPQGPPPALYGSGLMMNNGLKLKDTKELVANLNSSKVNRVWTDDGFTVPQITSTTTPSAGFKRSRPFWYNNN 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 38364668 38366947 + Maker00033734 Lcy13g1934 652239

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1934 313 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270(InterPro)
Lcy13g1934 313 Pfam B-box zinc finger 55 96 IPR000315 GO:0008270(InterPro)
Lcy13g1934 313 Gene3D Classic Zinc Finger 1 94 - -
Lcy13g1934 313 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 297 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Lcy13g1934 313 CDD Bbox1_BBX-like 5 47 IPR049808 -
Lcy13g1934 313 CDD Bbox1_BBX-like 57 100 IPR049808 -
Lcy13g1934 313 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Lcy13g1934 313 SMART bboxneu5 53 100 IPR000315 GO:0008270(InterPro)
Lcy13g1934 313 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Lcy13g1934 313 FunFam B-box zinc finger protein 21 1 98 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1934 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1934 Lcy-Chr13:38364668 Lcy8g1175 Lcy-Chr8:38136515 2.06E-17 dispersed
Lcy3g1220 Lcy-Chr3:37646038 Lcy13g1934 Lcy-Chr13:38364668 1.35E-35 transposed
Lcy6g0640 Lcy-Chr6:6095079 Lcy13g1934 Lcy-Chr13:38364668 1.01E-34 transposed
Lcy1g0650 Lcy-Chr1:5566956 Lcy13g1934 Lcy-Chr13:38364668 3.96E-19 wgd
Lcy13g1934 Lcy-Chr13:38364668 Lcy3g0981 Lcy-Chr3:33596234 1.65E-58 wgd
Lcy13g1934 Lcy-Chr13:38364668 Lcy8g1159 Lcy-Chr8:37954716 5.53E-54 wgd
Lcy13g1934 Lcy-Chr13:38364668 Lcy9g2238 Lcy-Chr9:46932300 2.42E-74 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy13g1849 . 1 339 C2C2-CO-like Transcription Factor Family AT5G24930 60.8 3.5e-82 302.8
Lcy2g0242 . 20 376 C2C2-CO-like Transcription Factor Family AT5G24930 50.7 4.3e-56 216.1
Lcy2g0242 . 5 376 C2C2-CO-like Transcription Factor Family AT5G57660 51.2 9.0e-67 251.5
Lcy8g1342 . 1 421 C2C2-CO-like Transcription Factor Family AT3G07650 58.2 1.4e-99 360.5
Lcy4g0405 . 1 409 C2C2-CO-like Transcription Factor Family AT3G07650 55.5 2.3e-89 326.6
Lcy8g1342 . 1 421 C2C2-CO-like Transcription Factor Family AT5G48250 56.7 1.6e-93 340.5
Lcy4g0405 . 1 409 C2C2-CO-like Transcription Factor Family AT5G48250 55.8 1.8e-86 317.0
Lcy8g1342 . 1 421 C2C2-CO-like Transcription Factor Family AT5G48250 56.7 1.6e-93 340.5
Lcy4g0405 . 1 409 C2C2-CO-like Transcription Factor Family AT5G48250 55.8 1.8e-86 317.0
Lcy3g0981 . 1 199 C2C2-CO-like Transcription Factor Family AT1G75540 58.3 9.0e-53 204.9
Lcy8g1159 . 1 204 C2C2-CO-like Transcription Factor Family AT1G75540 52.6 3.3e-47 186.4
Lcy1g0650 . 1 132 C2C2-CO-like Transcription Factor Family AT2G21320 70.5 3.7e-50 195.3
Lcy6g0892 . 1 200 C2C2-CO-like Transcription Factor Family AT2G21320 51.7 3.6e-45 178.7
Lcy1g0650 . 1 164 C2C2-CO-like Transcription Factor Family AT4G38960 59.1 7.5e-49 191.0
Lcy8g1175 . 1 216 C2C2-CO-like Transcription Factor Family AT4G38960 50.5 4.1e-47 185.3
Lcy6g0892 . 1 199 C2C2-CO-like Transcription Factor Family AT4G38960 53.9 5.4e-47 184.9
Lcy3g0981 . 1 197 C2C2-CO-like Transcription Factor Family AT4G39070 59.9 7.1e-55 211.5
Lcy13g1934 . 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 52.6 7.1e-47 184.9
Lcy8g1159 . 1 197 C2C2-CO-like Transcription Factor Family AT4G39070 54.1 1.2e-43 174.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004397 2 1 1 2 2 1 1 2 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 2 3 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19427 None None None None Lcy TR