Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1934 ATGAAGATTCAATGTGATGTCTGTGAAAAAGGCGATGCGTCGGTGTTCTGCACGGCTGACGAGGCGGCGCTCTGTAATCTCTGTGATCACCGTGTCCACCATGCCAATAAGCTCGCTTCGAAGCACCGACGGTTTTCTCTGCTCCGCCCTGCCGCGGCGGAGGCCCCTGTCTGCGATGTGTGCCGGGAGCGGCGAGGGTTCTTGTTCTGTCAGCAGGATAGGGCGATTCTGTGTAGAGAGTGCGATGATCCAATTCATTCGGCTAATGAACTCACTATGAAGCATGATAGGTTTCTTCTAACCGGGATTAAGCTTTCCGCCACCGCTGCTCTGTACGTGCCGCCTCCCTCCGACGAGAAACCGATCGGAACTGGTGGTCGTGTTGGGTCTGATCTCAAGTCAAAGGGTTCTGTCAAGAAGGCAGCTGCTGTTTCTGCTGCCCCAACTGGATGCACACCAAGTGTTTGCGTTAATGGCCCAACGAACATACCTCCGGCGGAAGCCGTGAACAAGGGCGGCGGAGGTCAGATTCCGACCGGTGGAGGTGGCTTGGCCAGCAGCATATCGGAATATTTGATGGAGACGCTTCCTGGGTGGCACTTTGAAGACTTTCTTGATTCCTCTGTTCCTCCCCCTTTTGTGGAGTGTGAAGGGCTGGGATTGCCATTTGTGGAAGGTGATTTTAATGGTGGTTTTTCACCATCGGAGTGTTTGGAGCTTTGGGTCCCTCAGGGGCCACCACCGGCGCTGTATGGTTCAGGATTAATGATGAATAATGGGTTGAAGTTGAAGGACACAAAGGAATTGGTAGCAAATCTAAATTCATCAAAAGTCAATAGAGTGTGGACAGATGATGGTTTCACTGTGCCACAGATCACAAGTACTACTACCCCATCTGCAGGCTTTAAGAGATCCAGACCTTTTTGGTATAACAATAACTAA 942 51.38 MKIQCDVCEKGDASVFCTADEAALCNLCDHRVHHANKLASKHRRFSLLRPAAAEAPVCDVCRERRGFLFCQQDRAILCRECDDPIHSANELTMKHDRFLLTGIKLSATAALYVPPPSDEKPIGTGGRVGSDLKSKGSVKKAAAVSAAPTGCTPSVCVNGPTNIPPAEAVNKGGGGQIPTGGGGLASSISEYLMETLPGWHFEDFLDSSVPPPFVECEGLGLPFVEGDFNGGFSPSECLELWVPQGPPPALYGSGLMMNNGLKLKDTKELVANLNSSKVNRVWTDDGFTVPQITSTTTPSAGFKRSRPFWYNNN 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 38364668 38366947 + Maker00033734 Lcy13g1934 652239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1934 313 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270(InterPro)
Lcy13g1934 313 Pfam B-box zinc finger 55 96 IPR000315 GO:0008270(InterPro)
Lcy13g1934 313 Gene3D Classic Zinc Finger 1 94 - -
Lcy13g1934 313 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 297 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Lcy13g1934 313 CDD Bbox1_BBX-like 5 47 IPR049808 -
Lcy13g1934 313 CDD Bbox1_BBX-like 57 100 IPR049808 -
Lcy13g1934 313 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Lcy13g1934 313 SMART bboxneu5 53 100 IPR000315 GO:0008270(InterPro)
Lcy13g1934 313 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Lcy13g1934 313 FunFam B-box zinc finger protein 21 1 98 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1934 Lcy-Chr13:38364668 Lcy8g1175 Lcy-Chr8:38136515 2.06E-17 dispersed
Lcy3g1220 Lcy-Chr3:37646038 Lcy13g1934 Lcy-Chr13:38364668 1.35E-35 transposed
Lcy6g0640 Lcy-Chr6:6095079 Lcy13g1934 Lcy-Chr13:38364668 1.01E-34 transposed
Lcy1g0650 Lcy-Chr1:5566956 Lcy13g1934 Lcy-Chr13:38364668 3.96E-19 wgd
Lcy13g1934 Lcy-Chr13:38364668 Lcy3g0981 Lcy-Chr3:33596234 1.65E-58 wgd
Lcy13g1934 Lcy-Chr13:38364668 Lcy8g1159 Lcy-Chr8:37954716 5.53E-54 wgd
Lcy13g1934 Lcy-Chr13:38364668 Lcy9g2238 Lcy-Chr9:46932300 2.42E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19427 None None None None Lcy TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1934 - - - 0.0