Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1937 ATGGCTGGGTTCTTCTATCTAGGAGGGAGAGAAGGCCCACCAAACAAACAAGAAGAAGAAGAAGAAAGAGAACAGAACTTGTTTTTGTACAGATCAAATGAAGAGATCTACAACAACAACAAGGGTTTTGAGATATGGCCTCACCAACACCAACACCAACACCAATACACCAATCAAAACCCTTCTCACTTGTCCTTCGGCGTCGGTCCCAGCCGCCGCACCTTCATGATCAACGACTCCGATGACCCCTCCAGATCATCCCCCTTCACCATCATGCGACCCGCCGCCTTCGCTGCCTCCGCCGCTGCTGCTGCCGCCGGCATGAATTGCCAGGACTGCGGCAACCAAGCCAAGAAGGACTGCGCTTATTTGAGGTGCAGGACTTGCTGTAAGAGCCGAGGCTTCCAGTGCCAGACCCACGTCAAGAGCACCTGGGTTCCGGCTGCCAAACGCCGCGAACGTCAGCAGCAGATTGCCGCCTTGCAGCAACAGCAGCAACAGGACCAGTTTCGCGCTGGGGAGAATTCTAAACGCCAGAGAGAAACCCAAACCGCCGCTGTCTCCGCCGCCACCGCCACCGCCACCGCTTGCCCTCGTTTGCCCTCTATCACGTCAGGGTTAGAACTGGCGCAATTTCCATCAGAAGTGAACTCACCGGCGGTGTTTCGGTGCGTCAAAGTAAGCGCAATGGACGATGCAGATGAAGAGTTTGCATATCAGACGGCTGTGAACATCGGTGGCCACGTGTTCAAAGGAATTCTCTACGATCAAGGCCCGGAAGTCCGTTACACAGCCGCCGGCGAGAGCTCCTCCGGCCACGGTGGAGACGGATCAGCACACCCACTTAACCTAATTGCCGGACCCTCCAACCCCGCCACCACTTCCGCCACTACCTCCGCCGCAACCAGTACCAACCCCACCGCCGCCGCCGCTCCGATGCTCGACCCTTCTATATATCCAGCTCCTCTCAATGCATTTATGGCTGGTACGCAGTTCTTCCCACCCTCAAGGTCATGA 1017 56.34 MAGFFYLGGREGPPNKQEEEEEREQNLFLYRSNEEIYNNNKGFEIWPHQHQHQHQYTNQNPSHLSFGVGPSRRTFMINDSDDPSRSSPFTIMRPAAFAASAAAAAAGMNCQDCGNQAKKDCAYLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQIAALQQQQQQDQFRAGENSKRQRETQTAAVSAATATATACPRLPSITSGLELAQFPSEVNSPAVFRCVKVSAMDDADEEFAYQTAVNIGGHVFKGILYDQGPEVRYTAAGESSSGHGGDGSAHPLNLIAGPSNPATTSATTSAATSTNPTAAAAPMLDPSIYPAPLNAFMAGTQFFPPSRS 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 38393571 38395172 + Maker00033761 Lcy13g1937 652242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1937 338 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 332 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
Lcy13g1937 338 Pfam Domain of unknown function (DUF702) 107 260 - -
Lcy13g1937 338 NCBIfam putative zinc finger domain, LRP1 type 109 151 IPR006510 -
Lcy13g1937 338 MobiDBLite consensus disorder prediction 287 308 - -
Lcy13g1937 338 MobiDBLite consensus disorder prediction 264 308 - -
Lcy13g1937 338 MobiDBLite consensus disorder prediction 1 24 - -
Lcy13g1937 338 NCBIfam LRP1 C-terminal domain 211 259 IPR006511 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1937 Lcy-Chr13:38393571 Lcy8g2063 Lcy-Chr8:46835235 1.20E-38 dispersed
Lcy1g0659 Lcy-Chr1:5659488 Lcy13g1937 Lcy-Chr13:38393571 9.22E-77 wgd
Lcy13g1937 Lcy-Chr13:38393571 Lcy6g0938 Lcy-Chr6:9560265 4.61E-47 wgd
Lcy13g1937 Lcy-Chr13:38393571 Lcy9g2234 Lcy-Chr9:46902117 4.24E-90 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19428 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1937 K27807 - csv:101213154 495.738