Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1938 ATGGATCTGTTGCGATCCGAGCCGATGCAATTGGTGCAGCTGATCATTCCTAATGAATCGGCGCACCGGACGATCTCTTACCTTGGCGGCCTCGGCCTCTTTCAATTCAACGATCTCAATGCATCTAGAAGCCCATTCCAGCGGACATATGCTGCTCAGGGTTTGGTAATATCGCCGAATGAGTTGCCTGGAGACTCAGGTCTTTTGTTGACTCTAAGTACTTTGGTGCCAATGAAACTTCCTGTCACCATTGAAGATGGCTTACCACTATTTTTATGGTTTAAGGTTGGTGAGTTTTTCCATCTAGCTCAAAGCATCGCTGGAGCTCAGCAAAGAGAAGCGGAAGTGCAGCAAAACGGGGAAGGATCCATTGACAGTCCCTTATTATTGGAACAAGAAATGACAACGGATTCAACGAAACAAGTTAAACTAGGATATATCAGTGGTCTAGTTCCGAGAGAAAAGGCAATGGCTTTTGAAAGGATTTTGTTTCGTTCAACTAGGGGCAATGTGTATATAAGACAAGCTGTGGTTGATGGTTCCGTCACTGACCCCGTATCTGGGGAGAAGGTCGAGAAAAATGTGTTTGTCATATTTTATTCTGGAGAGAGAGCAAAGAATAAAATTCTGAAAATATGTGAAGCTTTTGGTGCAAACCGTTATCCATTCACTGATGACTTGGGCAAACAATTTCAGATGATTACAGAGAGTTTCATCAGATTTAAAGCAGGCTTGGATTGGGTTGACAGAGAAGCTGGAAGACTTACCGGTTGGGCCAAGGAGAAGATAAAATCCGGTGGTCCTTGGACCCTGGGGGACACGGTTTCCACTAAATCTCTATTCCTCAATTTGATGATCCAGACCTGTTTTGAAGTTCCCGTTGCCTATGTTGATTTGGGATTTCAAAGTCCCCCTAGAAGATTCATAGTTCTTGATGATGGTGCTATAGTTATAGCAAATTCTTCTTTTCCTTTCACTTGGGCAGTTGTTAAGAGGGTTTCTAGTGGGTTTCTCGGCTTGACAAGAGTTGCAAGGAGGGATTCGGCTTCTGGGTTGGTTAAATATTTCCCTCAAACTATGCAAGGAATCAAAGATCAGGTGTCTGGAAAACTCTCTGAATTGAAGACTACCATCGATATGGGGCAAGTGCACCGAAGTAAACTCTTGCAGACAATTGGCCATCAATATGAGCAGTGGAATCTTATGGTAAAGAAGGAAAAGTCTGTTTACCACACTTTGAATATGCTCAGTGTCGACGTAACAAAGAAATGTCTTGTAGGTGAAGGTTGGTGTCCTGTCTTTGCAACAAATCAGATTCAAAGTGTGATGCAGAAGGCTACCTTTGACAGCAAATCACAAATTGAGGCTATCTTTCATGTTTTACAAACGAAGGAAGCACCACCAACATATTTCTGCACAAACAAATTTACTTCTTCATTTCAAGAAATCGTGGATGCATATGGGGTTGCGAAGTATCAGGAAGCAAATCCTGGAGTCTACACGATTGTCACCTTCCCTTTCCTTTTTGCTGTAATGTTTGGTGATTGGGGCCACGGAATATGCTTGTTGCTGGCAACATTATATTTCATAATAAGGGAGAAGAAATTTTCCAGCCAGAAACTTGGAGATATCATTGAAATGACTTTTGGGGGACGTTATGTTATCATGATGATGGCACTTTTTTCAATCTACACAGGACTGATTTATAATGAATTCTTTTCTGTCCCATTTGAACTCTTTGGGCCTTCCGCATACGGTTGTCGCGATACTTCATGCAGGGATGCTACTACCATTGGTTTAATAAAGATTCGTGATACTTATCCATTTGGTGTGGATCCTAAGTGGCATGGCACTCGAAGTGAGTTACCCTTTCTCAACTCATTGAAGATGAAGATGTCCATCCTACTGGGAGTAGCTCAAATGAATCTCGGAATTATATTGAGCTACTTCAATGCGAAATTCTTTGGAGAAAACATCAACATCTGGTACCAATTTGTTCCACAGATGATATTCTTGAACAGCTTATTTGGTTACCTCTCACTTCTCATAATTGTAAAATGGTGCTCTGGATCTCAAGCTGATCTGTATCACGTAATGATATATATGTTCTTGAGTCCTACAGATGATTTAGGCGAAAATCAGCTTTTTCCAGGACAGAAGTTTCTTCAGCTTCTGTTACTTCTGTCTGCCCTCACTGCCGTGCCATGGATGTTGTTTCCCAAGCCTTTTCTGTTGAAGAAACAAAATGAAGAAAGGCACCAAGGGCAATCCTACTCCGTACTTCACAGCCTAGATGACAATCTTGAAACGAAACAGCACCACGGTTCCCACGGCCATGAGGAGTTCGACTTCAGTGAGGTCTTTGTACACCAACTTATACATACTATAGAGTTTGTACTTGGTGCAGTTTCTAACACAGCATCTTATCTACGTCTATGGGCCCTCAGTCTAGCCCATTCGGAGTTGTCAAGTGTATTTTACGACAAGGTTCTCCTCCTAGCTTGGGGGTTCAATAGTTGGATCATCCGAGCAGTAGGAATAGCCGTTTTTATATGTGCAACTGTCGGAGTTTTACTAGTTATGGAAACTCTAAGCGCATTCCTGCACGCCTTGAGGCTCCATTGGGTGGAGTTTCAGAACAAATTCTATGCAGGAGATGGATTCAAATTTTCTCCCTTCTCGTTTTCGTTGCTTCGTGAGGAGGATGAGTGA 2712 42.4 MDLLRSEPMQLVQLIIPNESAHRTISYLGGLGLFQFNDLNASRSPFQRTYAAQGLVISPNELPGDSGLLLTLSTLVPMKLPVTIEDGLPLFLWFKVGEFFHLAQSIAGAQQREAEVQQNGEGSIDSPLLLEQEMTTDSTKQVKLGYISGLVPREKAMAFERILFRSTRGNVYIRQAVVDGSVTDPVSGEKVEKNVFVIFYSGERAKNKILKICEAFGANRYPFTDDLGKQFQMITESFIRFKAGLDWVDREAGRLTGWAKEKIKSGGPWTLGDTVSTKSLFLNLMIQTCFEVPVAYVDLGFQSPPRRFIVLDDGAIVIANSSFPFTWAVVKRVSSGFLGLTRVARRDSASGLVKYFPQTMQGIKDQVSGKLSELKTTIDMGQVHRSKLLQTIGHQYEQWNLMVKKEKSVYHTLNMLSVDVTKKCLVGEGWCPVFATNQIQSVMQKATFDSKSQIEAIFHVLQTKEAPPTYFCTNKFTSSFQEIVDAYGVAKYQEANPGVYTIVTFPFLFAVMFGDWGHGICLLLATLYFIIREKKFSSQKLGDIIEMTFGGRYVIMMMALFSIYTGLIYNEFFSVPFELFGPSAYGCRDTSCRDATTIGLIKIRDTYPFGVDPKWHGTRSELPFLNSLKMKMSILLGVAQMNLGIILSYFNAKFFGENINIWYQFVPQMIFLNSLFGYLSLLIIVKWCSGSQADLYHVMIYMFLSPTDDLGENQLFPGQKFLQLLLLLSALTAVPWMLFPKPFLLKKQNEERHQGQSYSVLHSLDDNLETKQHHGSHGHEEFDFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYDKVLLLAWGFNSWIIRAVGIAVFICATVGVLLVMETLSAFLHALRLHWVEFQNKFYAGDGFKFSPFSFSLLREEDE 903
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 38412158 38425971 + Maker00033760 Lcy13g1938 652243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1938 903 PANTHER VACUOLAR PROTON ATPASES 358 901 IPR002490 GO:0007035(PANTHER)|GO:0016471(PANTHER)|GO:0033179(InterPro)|GO:0046961(InterPro)|GO:0051117(PANTHER)|GO:1902600(InterPro)
Lcy13g1938 903 Pfam V-type ATPase 116kDa subunit family 96 236 IPR002490 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Lcy13g1938 903 Pfam V-type ATPase 116kDa subunit family 362 895 IPR002490 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Lcy13g1938 903 PIRSF ATP6V0A1 347 903 IPR026028 GO:0000220(InterPro)|GO:0046961(InterPro)
Lcy13g1938 903 PIRSF ATP6V0A1 92 255 IPR026028 GO:0000220(InterPro)|GO:0046961(InterPro)
Lcy13g1938 903 PIRSF ATP6V0A1 1 54 IPR026028 GO:0000220(InterPro)|GO:0046961(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1938 Lcy-Chr13:38412158 Lcy8g1870 Lcy-Chr8:45015690 7.36E-76 dispersed
Lcy13g1938 Lcy-Chr13:38412158 Lcy3g0992 Lcy-Chr3:33750832 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1938 K02154 - csv:101209817 1008.44