Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy13g1941 | ATGGCTGACACCGGCTCGGTCTCCGACAAGAGAATGTCGTGTTCGATCCCCGAGAGGTTCCAGCTCCATGCCGCCATGTTGGCCTTGCAATTCGGCTATGCCGGTTTCCACGTCGTCTCTAGAGCTGCCCTCAACATGGGCATCAGTAAACTCGTCTTCCCTGTCTACCGAAATGTCATCGCTTTGCTTCTTCTTCTTCCCTTCGCATATTTCATTGAAAAGAAGGATAGGCCTGCGCTCACTCTTAACTTTGTTCTTCAGTTCTTCCTCCTCGCTCTCGTTGGAATTACAGCCAATCAAGGGTTTTATTTGCTGGGTTTGGATAATACTTCCCCAACCTTTGCTTCTGCTATTCAGAATTCTGTCCCTGCCATTACTTTTCTCATGGCTGCACTTCTCAGGTAA | 405 | 48.64 | MADTGSVSDKRMSCSIPERFQLHAAMLALQFGYAGFHVVSRAALNMGISKLVFPVYRNVIALLLLLPFAYFIEKKDRPALTLNFVLQFFLLALVGITANQGFYLLGLDNTSPTFASAIQNSVPAITFLMAALLR | 134 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 38464860 | 38465635 | + | Maker00033645 | Lcy13g1941 | 652246 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy13g1941 | 134 | PANTHER | WAT1-RELATED PROTEIN | 24 | 134 | IPR030184 | GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro) | |
| Lcy13g1941 | 134 | Pfam | EamA-like transporter family | 26 | 133 | IPR000620 | GO:0016020(InterPro) | |
| Lcy13g1941 | 134 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 56 | 133 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy13g1941 | Lcy-Chr13:38464860 | Lcy2g0410 | Lcy-Chr2:3422850 | 3.41E-50 | dispersed | |
| Lcy13g1941 | Lcy-Chr13:38464860 | Lcy9g2233 | Lcy-Chr9:46880346 | 2.36E-72 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy13g1941 | - | - | - | 0.0 |