Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1955 ATTCTCCTTGCGCTTCAAATAGGCTTTTCTTCTGGATCTACGGACTCCTTGCGACTGGTGAAGATTCTTCATGGAGAGGTTCATGATGTGTCGGAAGTGGGCCGGTTGATGGAGGAGGTTTGTGGCTTCTTCATCCTTTTGATGCTGGTAAAGTTTCCTTCACTCCACGCCAAGAAATCATTTGGTGTCCTCTTTGACTGCGACCCATTTGGAAACCGCATCGAATTAGCTAAAATTTCCATTTCTGCACTCTCAATTCACTCGATTCCTCGCTTTTCTGCTTCCAATTCGAGCTGGGGTTCTGCTAATTTAGGGCTTTTCCCACTTTCCCACACTTGGGGTTTTCCTGTTCCTTCTGATTCTATCATGGGATCTACTGCTTTCCACTTCCTTCAAGGAAGTGAGTTTTGTATTTGTTGGGTTTCCATTGATTTCCAGGGAATGGCTACGCCAGTTGAGCCTCCAAATGGGGTTAGATCCCAAGGGAAGCATTACTATTCAATGTGGCAGACATTGTTTGAGATTGATACTAAATATGTACCCATCAAACCTATTGGCAGAGGAGCATATGGTATTGTGTGTTCTTCTGTGAATAGGGAAACAAACGAGAAAGTTGCGATAAAGAGGATACATAATGCGTTTGAGAATCGTATCGACGCCCTCCGGACTTTGCGTGAATTGAAGCTCCTTAGGCATCTTCGCCACGAAAATGTGATATGTTTGAAAGATGTGATGATGCCTATCCATAGGAGAAGTTTCAAAGACGTTTATTTGGTTTATGAACTGATGGATACGGATCTTCATCAGATTATTAAGTCTTCTCAAACTCTTACCAATGACCACTGCCAATATTTTCTCTTTCAGTTGCTCCGAGGCCTAAAGTATTTGCACTCTGCAAACATTCTACATAGGGACTTGAAGCCTGGGAACCTCCTTGTCAATGCGAATTGTGATCTCAAGATATGTGATTTCGGGTTAGCGCGTACGAGCAACGGCAAGAATCAATTTATGACAGAATATGTCGTAACTCGCTGGTATCGAGCCCCAGAACTGCTGCTCTGTTGTGAGAATTATGGGACATCGATTGACGTGTGGTCTGTAGGATGCATCTTTGCCGAGCTTCTCGGTAGGAAACCTATATTCCCCGGTACAGAATGTTTGAATCAACTCAAACTGATAATTAACATACTGGGTAGCCAGAGAGAGGAAGATCTTGAGTTCATAGACAATCCAAAGGCAAGGAGGTATATAAAATCCCTCCCATACTCTCCTGGGGCTCCTCTTCCCCGTCTTTATTCGAACGCTCATCCTCTTGCGATCGATCTACTACAAAAGATGCTTGTCTTTGACCCATCAAAGAGGATTAGTGTCACTGAAGCATTGCAACACCCTTACATGGCCCCACTGTATGATCCAAACAGCAATCCTCCAGCTCAGGTACCGATCGATCTCGACATAGATGAGGAACTTGGAGAAGAAATGATACGAGAGATGATGTGGAAGGAAATGCTTCATTACCACCCTGAAGGTCTGGAAGAACATGCAGAACTGACATGTTTCCATCCCGAACCTACTACGAGTAGTACCGTGGTGTATTCCTGA 1602 44.13 ILLALQIGFSSGSTDSLRLVKILHGEVHDVSEVGRLMEEVCGFFILLMLVKFPSLHAKKSFGVLFDCDPFGNRIELAKISISALSIHSIPRFSASNSSWGSANLGLFPLSHTWGFPVPSDSIMGSTAFHFLQGSEFCICWVSIDFQGMATPVEPPNGVRSQGKHYYSMWQTLFEIDTKYVPIKPIGRGAYGIVCSSVNRETNEKVAIKRIHNAFENRIDALRTLRELKLLRHLRHENVICLKDVMMPIHRRSFKDVYLVYELMDTDLHQIIKSSQTLTNDHCQYFLFQLLRGLKYLHSANILHRDLKPGNLLVNANCDLKICDFGLARTSNGKNQFMTEYVVTRWYRAPELLLCCENYGTSIDVWSVGCIFAELLGRKPIFPGTECLNQLKLIINILGSQREEDLEFIDNPKARRYIKSLPYSPGAPLPRLYSNAHPLAIDLLQKMLVFDPSKRISVTEALQHPYMAPLYDPNSNPPAQVPIDLDIDEELGEEMIREMMWKEMLHYHPEGLEEHAELTCFHPEPTTSSTVVYS 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 38599649 38604291 - Maker00033709 Lcy13g1955 652260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1955 533 FunFam Mitogen-activated protein kinase 263 492 - -
Lcy13g1955 533 CDD STKc_TEY_MAPK 173 508 - -
Lcy13g1955 533 Gene3D Phosphorylase Kinase; domain 1 166 502 - -
Lcy13g1955 533 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 173 504 IPR050117 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Lcy13g1955 533 SMART serkin_6 179 466 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g1955 533 Pfam Protein kinase domain 181 466 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g1955 533 ProSitePatterns Protein kinases ATP-binding region signature. 185 208 IPR017441 GO:0005524(InterPro)
Lcy13g1955 533 SUPERFAMILY Protein kinase-like (PK-like) 171 473 IPR011009 -
Lcy13g1955 533 ProSitePatterns MAP kinase signature. 214 317 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g1955 533 ProSiteProfiles Protein kinase domain profile. 179 466 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g1955 533 FunFam Mitogen-activated protein kinase 165 273 - -
Lcy13g1955 533 Gene3D Transferase(Phosphotransferase) domain 1 263 492 - -
Lcy13g1955 533 ProSitePatterns Serine/Threonine protein kinases active-site signature. 301 313 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1955 Lcy-Chr13:38599649 Lcy7g1245 Lcy-Chr7:15588274 2.47E-101 dispersed
Lcy7g0455 Lcy-Chr7:4005911 Lcy13g1955 Lcy-Chr13:38599649 6.23E-25 dispersed
Lcy9g1638 Lcy-Chr9:41528812 Lcy13g1955 Lcy-Chr13:38599649 4.98E-20 dispersed
Lcy13g1955 Lcy-Chr13:38599649 Lcy6g0925 Lcy-Chr6:9406572 3.32E-207 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65585 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1955 K20535 - csv:101213478 756.903