Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy13g1979 | ATGTCGAAGCAGAAGTCGAAGAAGATGGGATTATTAGGGATATCAATGTGCGGTAGAGATCAGGAGCGAGAGATTGAGCAGTTATCCAGAGACGGCAGCCAATACAGTCTCACCGGCGGAATCCTGCCACCGCTCGGCGTCAATGGTCGAAAAAATCGAAGAGTCAAACTCCGTCCTCATATAATCTCGCCGTTCGATTACCACTACAGACTTTGGGAGACGTTTCTGATAGTTCTAGTACTCTATACGGCCTGGGTTTGCCCGTTTGAGTTCGGCTTTCTCAAGACGACCGGAGGAGTCCTTGCTGTAATCGATAATGTTGTAAATGGAATTTTCGCCATCGATATAGTTTTGACCTTCTTTGTCGCATATTTAGACAAATCTACTTACCTGCTCGTCGACGAACCTAAGCTGATTGCTATGCGATATGCCAAAACCTGGTTGGTTCTCGATGTTATCTCCATTATTCCGTCGGAATTGGCTCGGAGTATTCTCCCTCCTTCTGCTCAGGCTTATGGCTACTTCAATATGCTTCGTCTGTGGCGTCTTCGACGAGTCAGTTCAATGTTCGCCAGGATGGAAAAGGACAGGCACTTCAACTATTTCTGGGTTCGATGCGCGAAGCTTATATTTGTGTGTCTGTTTACGGTTCATTTTGCTGGGTGCTGCTTTTATCTTATTGGTTCAGACTTTAAGGACCCTAAAAAGGTATGGTTGACCTTATTCTATGAAGACTATAATAAAGAGAGTTTGTGGGCGCGTTATGTGACTGCAATTTACTGGTCAATTGCCACTCTCACAACCACTGGCTATGGCGATTTGCATGCTGTAAATGATAGAGAGATGACATTTATCATATGTTACATGTTTTTTATTCTGGGGTTGCAAGCTTACCTGATTGGAAATATGACTAACTTGGTCGTCCATGGCACTAGTCGAACCAGGAAATTTAGGGACACCATACAAGCTGCCTCAAATTTCGCCCAAAGAAATCAACTACCTGTTCGGCTGCAAGAACAGATGCTTGCTCATCTGTGTTTGAAATTCAGGACTGATTTAGAGGGATTACAACAGCAAGAGACAGTTGATTCTCTTCCAAAAGCCATTAGATCTAGCATCGCCCACCATCTCTTCTATTCACTTGTTGATAGTGCTTATTTGTTTAATGGGGTGTCAACCGACTTGATTTTTCAACTGGTAACAGAAATGAAGGCTGAGTACTTCCCTCCCAAAGAAGACATCATCTTGCAGAATGAAGCACCTTCTGATTTCTATATAGTTGTCACCGGCACAGCGGATCTTATCATTCAAAGAAACGGAATAGAAGAGATCATCGGTGAGGCAAAGACAGGAGATGTCATTGGTGAGATAGGCGTGCTTTGTTATCAACCACAACTGTTTACAGTTCGAACCAGCCGTTTGAGTCAATTGTTGCGTTTGAATCGCTCATCGTTTTTTAACTTGGTACAAGCAAGCGTTGGGGACGGGACAATAATAATGGACAATCTCCTTAAGCACCTGAAGGAGATAAAAGACCCCATCATGGAGGAAATTGTGCATGAAACAGCACAGTCATTGACTCAGTCTGGAATGGAAATGCCTCTCAATTTACACTACGCAGCAGAGAGTGGCGATGACTTATTGTTGCATCAGTTGCTAAAGCGGGGTTCACAACCGAATGAAGTAGATGGTAGTAGCGGGAAGACAGCACTTCTGTATAGCTTACCTGGCATTTTTCGTTATCAGCATCTTGCAGCAGCTAGAGGAAACGAACATTGTGTAGTTCTACTCCTAGAGAATGGCGCAGACCCGAACCGAAGAGACTTTGAAGGAAACGTTCCCTTATGGCAAGCAATACGAGGGAAGCATGAGTCTATTGTTAAGCTTCTAATGGACAATCGTGCCAACATTTCTTCAGGCGACGTTGCCCAATTTGCATGCGCTGCTGCAGAGCAGAACAGCATAGATATGCTCCAATCCATTGTCCAATGTGGTGGAGACGTAACACTGTCGAGAAGCAATGGGACTACAGCTCTTCACCTGGCAGTATGTGAAGGAAACAGCGAAATGGTTAAGTTCCTTTTAGAGCAAGGGGCTGACATTGATAAGCCAGATGTTCATGGATGGACTCCTCGAGCATTGGCAGATCATCAAGGCCATGAAGAGATAAAAGAACTATTCTCTGGTAAACAATCTATGAACAAACCATCATCCGTCGTCCATATTCCACAAATTCCCGAACCAAATTACCTACGGAAGTTCCAGAGCGAATCGAACATGCCTCGGTTTTCTCAAGACTATAGTATGACTCCTGTTCGAGAATCAAATTATTCTGACATGCCTCCTCGAAGGAGAAGAAGTAACAATTACCAAAACTCGCTTGTTGGGTTCATGTCCACCATCAATAACGGTGAAAGAGACGTACTACAACCTACATCAATCAATTTTAGCAATAGCCAGGGGGTAAAGGTGGCTTACCAGGCAAGAGTTACTCTCAGTTGCCCTGAAAAGGGAGAAGTTGCTGGAAAGCTTGTGCTTTTACCCAGATCCATTCAAGAACTACTTGAAATTGGTGCCAAAAAATTTGGGATCTCTGTAACAAAGATTTTAACTCAAGAAGGAGCTGAAGTTGAGGATGTAAACCTTCTCAGAGATGGTGATCGTCTCGTCCTTGTGAGTGACGCCGGTGCCGCCATTCCCAGTAGCCACCAAGTATCATAG | 2721 | 44.14 | MSKQKSKKMGLLGISMCGRDQEREIEQLSRDGSQYSLTGGILPPLGVNGRKNRRVKLRPHIISPFDYHYRLWETFLIVLVLYTAWVCPFEFGFLKTTGGVLAVIDNVVNGIFAIDIVLTFFVAYLDKSTYLLVDEPKLIAMRYAKTWLVLDVISIIPSELARSILPPSAQAYGYFNMLRLWRLRRVSSMFARMEKDRHFNYFWVRCAKLIFVCLFTVHFAGCCFYLIGSDFKDPKKVWLTLFYEDYNKESLWARYVTAIYWSIATLTTTGYGDLHAVNDREMTFIICYMFFILGLQAYLIGNMTNLVVHGTSRTRKFRDTIQAASNFAQRNQLPVRLQEQMLAHLCLKFRTDLEGLQQQETVDSLPKAIRSSIAHHLFYSLVDSAYLFNGVSTDLIFQLVTEMKAEYFPPKEDIILQNEAPSDFYIVVTGTADLIIQRNGIEEIIGEAKTGDVIGEIGVLCYQPQLFTVRTSRLSQLLRLNRSSFFNLVQASVGDGTIIMDNLLKHLKEIKDPIMEEIVHETAQSLTQSGMEMPLNLHYAAESGDDLLLHQLLKRGSQPNEVDGSSGKTALLYSLPGIFRYQHLAAARGNEHCVVLLLENGADPNRRDFEGNVPLWQAIRGKHESIVKLLMDNRANISSGDVAQFACAAAEQNSIDMLQSIVQCGGDVTLSRSNGTTALHLAVCEGNSEMVKFLLEQGADIDKPDVHGWTPRALADHQGHEEIKELFSGKQSMNKPSSVVHIPQIPEPNYLRKFQSESNMPRFSQDYSMTPVRESNYSDMPPRRRRSNNYQNSLVGFMSTINNGERDVLQPTSINFSNSQGVKVAYQARVTLSCPEKGEVAGKLVLLPRSIQELLEIGAKKFGISVTKILTQEGAEVEDVNLLRDGDRLVLVSDAGAAIPSSHQVS | 906 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 38827616 | 38834391 | - | Maker00033694 | Lcy13g1979 | 652284 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy13g1979 | 906 | Pfam | Cyclic nucleotide-binding domain | 406 | 491 | IPR000595 | - | |
| Lcy13g1979 | 906 | Pfam | Ion transport protein | 69 | 314 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lcy13g1979 | 906 | SUPERFAMILY | cAMP-binding domain-like | 312 | 507 | IPR018490 | - | |
| Lcy13g1979 | 906 | FunFam | Potassium channel KAT3 | 71 | 309 | - | - | |
| Lcy13g1979 | 906 | ProSiteProfiles | KHA domain profile. | 829 | 906 | IPR021789 | - | |
| Lcy13g1979 | 906 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 387 | 506 | IPR000595 | - | |
| Lcy13g1979 | 906 | PANTHER | POTASSIUM CHANNEL AKT1 | 24 | 890 | IPR045319 | GO:0005249(InterPro)|GO:0006813(InterPro) | |
| Lcy13g1979 | 906 | FunFam | Potassium channel KAT2 | 375 | 511 | - | - | |
| Lcy13g1979 | 906 | SMART | cnmp_10 | 387 | 504 | IPR000595 | - | |
| Lcy13g1979 | 906 | Pfam | Ankyrin repeats (3 copies) | 648 | 726 | IPR002110 | GO:0005515(InterPro) | |
| Lcy13g1979 | 906 | Pfam | Ankyrin repeats (3 copies) | 537 | 639 | IPR002110 | GO:0005515(InterPro) | |
| Lcy13g1979 | 906 | PRINTS | EAG/ELK/ERG potassium channel family signature | 299 | 308 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Lcy13g1979 | 906 | PRINTS | EAG/ELK/ERG potassium channel family signature | 82 | 89 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Lcy13g1979 | 906 | PRINTS | EAG/ELK/ERG potassium channel family signature | 105 | 115 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Lcy13g1979 | 906 | PRINTS | EAG/ELK/ERG potassium channel family signature | 116 | 125 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Lcy13g1979 | 906 | PRINTS | EAG/ELK/ERG potassium channel family signature | 281 | 292 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Lcy13g1979 | 906 | PRINTS | EAG/ELK/ERG potassium channel family signature | 255 | 272 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Lcy13g1979 | 906 | SMART | ANK_2a | 610 | 639 | IPR002110 | GO:0005515(InterPro) | |
| Lcy13g1979 | 906 | SMART | ANK_2a | 674 | 703 | IPR002110 | GO:0005515(InterPro) | |
| Lcy13g1979 | 906 | SMART | ANK_2a | 577 | 606 | IPR002110 | GO:0005515(InterPro) | |
| Lcy13g1979 | 906 | SMART | ANK_2a | 641 | 670 | IPR002110 | GO:0005515(InterPro) | |
| Lcy13g1979 | 906 | SMART | ANK_2a | 532 | 561 | IPR002110 | GO:0005515(InterPro) | |
| Lcy13g1979 | 906 | SUPERFAMILY | Voltage-gated potassium channels | 64 | 308 | - | - | |
| Lcy13g1979 | 906 | Gene3D | Jelly Rolls | 355 | 528 | IPR014710 | - | |
| Lcy13g1979 | 906 | Gene3D | - | 70 | 308 | - | - | |
| Lcy13g1979 | 906 | ProSiteProfiles | Ankyrin repeat profile. | 610 | 642 | IPR002110 | GO:0005515(InterPro) | |
| Lcy13g1979 | 906 | SUPERFAMILY | Ankyrin repeat | 536 | 727 | IPR036770 | - | |
| Lcy13g1979 | 906 | CDD | CAP_ED | 387 | 490 | IPR000595 | - | |
| Lcy13g1979 | 906 | ProSiteProfiles | Ankyrin repeat profile. | 674 | 706 | IPR002110 | GO:0005515(InterPro) | |
| Lcy13g1979 | 906 | ProSiteProfiles | Ankyrin repeat region circular profile. | 583 | 608 | - | - | |
| Lcy13g1979 | 906 | ProSiteProfiles | Ankyrin repeat profile. | 583 | 609 | IPR002110 | GO:0005515(InterPro) | |
| Lcy13g1979 | 906 | Gene3D | - | 533 | 729 | IPR036770 | - | |
| Lcy13g1979 | 906 | Pfam | KHA, dimerisation domain of potassium ion channel | 829 | 891 | IPR021789 | - | |
| Lcy13g1979 | 906 | ProSiteProfiles | Ankyrin repeat region circular profile. | 674 | 705 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy13g1979 | Lcy-Chr13:38827616 | Lcy2g0768 | Lcy-Chr2:6828473 | 0 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy13g1979 | K21867 | - | csv:101217334 | 1352.42 |