Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1990 ATGTCCTTTTCTTCTCTCTCCGCAAAGCTCACCCTTCTTGCTCTTCTCTCTGCCTCCACTTTCTATTGCTTCTACAAGTCCCGCCGTCTCAGAAGGCTTAAACTCTCCTTAAACCCTTCTCTTTCTTCTCGCAGAGCCAAGCTTTTCTTCGCTTCCCAAACAGGCACTTCGAAGGCCCTAGCTCATCGCCTGCTCAACGCTTTGAATTCGAATGAGTTTGTGTTTGATCTTGTTGATCCCAAGGATTACGAGCCTGAGGATCTCTGTAAGGAGAGTTTAGTTTTGTTCGTTGCTTCCACCTGGGAAGATGGAGGGCCACCTCCACATGCTAAGTTCTTCGCGAATTGGCTCTCTGAGAGCGCGGAGGATTTCAGAGTCGGTTCGTTGTTGCTCTCTCAATGTAAGTTTGCTGTGTTTGGTGTTGGTAGTCGAGCTTATGGAGTGACATTCAATGCGGTTGCGAGGGATTTCTCCAAGCGGATGAAGGCATTGGGTGCGAAGGAGATACTAGCGGTTGGTGAAGGAGACGTTGATGGAGGTGATGTAGATAAGTGTTTTGATGATTGGAGTCGGCAATTGCTGAAGGTTTTGAAGGTTGATGCGGTGGGAAGTGGTGCGGATTTAGATTCTGGGATTGCTGGGGACAGTGATGCTGAAAGTGATGAGGATGAAGAAGATGCGGACCTTGGGGCGGAGGACATTGTTGATCTTGAGGATATTGCTGGTAAGGGTCCTTCAAGAAAGTCGACGAATGTCGCCGAAACTAATGGGAAACTGAATGGGAAAAAGATTATGGTGACCCCAGTGATAAGAGCGAGCTTAGAAAAGCAGGGATATAAAATTATTGGCTCACACAGCGGTGTGAAAATATGTAGATGGACAAAGTCTCAGCTTCGAGGACGAGGAGGTTGCTACAAACATTCATTTTATGGCATAGAAAGTCATCGATGCATGGAGGCAACTCCTAGTTTGGCTTGTGCCAACAAATGCGTTTTCTGCTGGAGGCATCACACAAATCCGGTAGGAAAGAGTTGGCAGTGGGAGATGGATGACCCATTGGATATTGTGAATTCTGCAATAGATTTACACACAAAAATGATTAAGCAAATGAAAGGTGTTCCAGGTGTTACGCAGGAGAAGTTAGAAGAGGGCCTGTCTCCAAGACATTGTGCCTTATCTCTTGTTGGTGAACCTATTATGTACCCAGAGATTAATACACTTGTTGACGAATTGCACCGAAGGCGGATTTCAACTTTCTTAGTAACAAATGCTCAGTTTCCTGATAAAATAAAATCGCTGAAGCCAGTCACCCAGTTGTATGTAAGTGTAGATGCTGCGACAAAGGAGAGTTTGAAGGCAATTGATAGACCACTTTTTGGGGACTTCTGGGAGCGATTCATTGATTCCTTGAAAGCTCTTAATGACAAGCAACAACGAACAGTTTATCGATTGACATTGGTAAAAGGTTGGAACACAGAAGATATTGATGCCTATTCAAATCTCTTTAGCATTGGTAGACCTGATTTTATTATGAGAAATTCCATGACCTGGTGGCCTCTGGAAAACCTTTTGATAGCAAGGACTACATGGCTCCAACACCATCATGGGCTGTATATGGCTCTGACGAAGGTGGATTTGATCCTGATCAATCTCGGTACCGAAAGGAGCGACATCATAGACCAAAAGCCACGTCCTGATTGGTCTGAATGTCCGGGTCAGTTTTGTTTAATGGTTTAA 1737 44.96 MSFSSLSAKLTLLALLSASTFYCFYKSRRLRRLKLSLNPSLSSRRAKLFFASQTGTSKALAHRLLNALNSNEFVFDLVDPKDYEPEDLCKESLVLFVASTWEDGGPPPHAKFFANWLSESAEDFRVGSLLLSQCKFAVFGVGSRAYGVTFNAVARDFSKRMKALGAKEILAVGEGDVDGGDVDKCFDDWSRQLLKVLKVDAVGSGADLDSGIAGDSDAESDEDEEDADLGAEDIVDLEDIAGKGPSRKSTNVAETNGKLNGKKIMVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWEMDDPLDIVNSAIDLHTKMIKQMKGVPGVTQEKLEEGLSPRHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKSLKPVTQLYVSVDAATKESLKAIDRPLFGDFWERFIDSLKALNDKQQRTVYRLTLVKGWNTEDIDAYSNLFSIGRPDFIMRNSMTWWPLENLLIARTTWLQHHHGLYMALTKVDLILINLGTERSDIIDQKPRPDWSECPGQFCLMV 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 38905116 38911320 + Maker00033654 Lcy13g1990 652295

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1990 578 SFLD tRNA wybutosine-synthesizing 261 517 IPR034556 GO:0008033(InterPro)|GO:0051539(InterPro)
Lcy13g1990 578 Gene3D - 26 204 IPR029039 -
Lcy13g1990 578 ProSiteProfiles Radical SAM core domain profile. 310 550 IPR007197 GO:0003824(InterPro)|GO:0051536(InterPro)
Lcy13g1990 578 Pfam Flavodoxin 48 189 IPR008254 GO:0010181(InterPro)
Lcy13g1990 578 Pfam Radical SAM superfamily 324 497 IPR007197 GO:0003824(InterPro)|GO:0051536(InterPro)
Lcy13g1990 578 SUPERFAMILY Flavoproteins 44 198 IPR029039 -
Lcy13g1990 578 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE 7 517 IPR034556 GO:0008033(InterPro)|GO:0031591(PANTHER)|GO:0051539(InterPro)
Lcy13g1990 578 ProSiteProfiles Flavodoxin-like domain profile. 46 194 IPR008254 GO:0010181(InterPro)
Lcy13g1990 578 SUPERFAMILY Radical SAM enzymes 323 523 - -
Lcy13g1990 578 Gene3D Aldolase class I 249 536 IPR013785 -
Lcy13g1990 578 CDD Radical_SAM 322 494 - -
Lcy13g1990 578 PRINTS Flavodoxin signature 47 60 IPR001094 GO:0010181(InterPro)
Lcy13g1990 578 PRINTS Flavodoxin signature 133 143 IPR001094 GO:0010181(InterPro)
Lcy13g1990 578 PRINTS Flavodoxin signature 158 177 IPR001094 GO:0010181(InterPro)
Lcy13g1990 578 PRINTS Flavodoxin signature 95 106 IPR001094 GO:0010181(InterPro)
Lcy13g1990 578 SFLD Radical SAM 261 517 IPR007197 GO:0003824(InterPro)|GO:0051536(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1990 K15449 - - csv:101217239 887.871
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g939 . . . . . . . . Cmo05g00245 . . . . . Sed11g1032 . . Bhi04g00248 Tan02g1957 Cmetu03g0117 . Hepe10g0647 . Lcy13g1990 Cla08g01493 Cam08g1982 Cec08g1556 Cco08g1693 Clacu08g1672 . Cre08g1455 . . Cone17ag1338 . . . . Cme03g01960 Blo17g00803 . Bda08g01288 . . Bpe05g00087 . Bma05g00116 . . . . Cma05g00237 Car05g00199 . Cpe11g00197 . . . . . . . . . . . . . . . Lsi08g01398 Csa02g02049 Chy03g01465 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009285 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 34