Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1995 ATGGAGCTCAAGCAGCGCCTACAACTGGAGTCAAACAAAACGGTGAATGTTCAAGGATCTGAAAATCCGATTCCTCTCTCACCACAGTGGCTTCTGCCTAAGCCAGGGGAGAGTAAGCATGGAATTGGAACTGGGGAAAACCATTTCAATCAGCAACCTGCTTATGGAAACCACATGGACATGATGAAGGGATCAGAGAATTATGAGGATATGAATGAAATTCAAAAGAAAAAAGAAGTTTTTAGGCCATCCTTGACTGATGCTGAAATTGGTAGGCGTGACCGTTGGCATGATGAAGAAAGGGAAAATAATTCTTCAATGCGCAAAGATCGTTGGAGGGATGGTGAGAAAGAGGCAGGTGATAGTCGTAAGATGGACCGTTGGACTGAAGATTCATCCGCAAGAGTCTTTAGAGAATCTCGTCGAGGCCCATCAGAACGCTGGTCTGATTCAAGCAATCGGGATAATGTTCATTATGATCAACGACGTGAGAGCAAATGGAATACACGTTGGGGCCCTGATGATAAGGAAACTGAAGGCTTTCGTGAGAAGCGTATGGACTCTGGGAGAGATGGTGATTTGCATCTTGATAAGAATTTCTCTCATGTGTCCAATTATGGGAAAAATGACCGGGATGGAGATCATTATCGCCCATGGAGGTCTAGTGCCTCTCAGGGTCGAGGTAAGGGAGAACCCACTCACCATCAAACCCAAACTCCAATCAAACAAGTTGCTGCATTTTCCCATCGTGGACGGGCAGACAACACACCTCCTACCTACTCTATAGGTCGTGGAATCATCAGTTCTGGTGTAAACCCTACAAATAGTATTTATTCATCTTCTAATTCTCTTGGAGCTTCCTCTGAGAAATCTGGAAGAGAGCCTTACCACTACAAATATAGCAGGACAAAGTTGCTTGATGTTTACAGGACTACCAATCTGACATCACAGCCAGGTGTAAAAGATGGATTTGTGCCAGTACCAACTCTTACGCTGGATGACCCATTGGAGCCTCTTGCTCTTTGTGCGCCAACTGCTGAAGAAATGACTTTCTTGAAGGGGATTGATAAAGGGGAAATTGTTAGTAGTGGTGCACCTCAAGTATCAAAAGATGGTCGAAACTCATCAGAATTTACGCAGACAAGACGAACAAAACTTGGTGTTTCACCTTCCCCAGGCAGTAGGGAGGATTTATCTCATGGATTTGATGATTATAATGATGATAAGGATGATAGCACCACAAAACCTGGTCACACAAACTATTCAGAGGTCTCTACTGAGCGACAGGTGCCTTATCATAGGCCCCAGTCAAAAATAGAAGCCATTCAGGAACATATGGCACATGCTAGTAGCAAGTTCAAATCTGAAGCTTTCAGAGAAGATGACAATGCTATGAGGAAAGCAGATGAGGTGCCTGTCAATAGGGAATCAAGTGTTAAGGGGGGTTCCACTGTTCATCCTGGCAGTACGTGGGATGCCTCATCGCTTGAGCAACCCCGGAATACATCCATGCCTGATTGGAGAGACAATCCTAATAATATTAGCTCAGGAACTCCTGACAAGGGTTGGCTACAACCTTCAAAGAATCTTAATGATGGGTGGGGAAGTAATACAGCTACTCCATCTTATCCGAAGGACAATCCCAAATGGCAGACAGGGGAAGAATCTATCATTAGAAGGCAACTTTCAGGGATTTTGGACAAGGAACAACTAGCAAGGAAAACTTATCAATCTGCTCCAGAGGATTTACAACTTCATTACATTGATCCTTCTGGTGCAATTCAAGGCCCATTTAGTGGGGCTGACATTATTCAATGGTTTGAGGGTGGGTATTTTGGCTTAGATTTACCTGTCCGTCCAGCAAATCCGCCAAATGACTTGCCATTTTCAGCACTTGGTGATGTCATGCCTCATTTACGGTCTAAAGCCAAGCCACCACCAGGATTTAGTGGACCAAAGCCAAATGAATTTGCAGATACTATAGGTAATGCCAGTTATGGTAGCTTGGGAAAGCTTCATACTGGTTTGAATGAGATTGATACTTTGAGGAATGAGGCAAGGCATAAACATGGCTCGACGGTGGAAGCTGAAAACAGATTTTTGGAGTCACTCATGTCTGGTAATTTAGGTTCTTCACCTCTCGAGAAGAGTGCCTTTTCTGAAGGTGTGCCAGGATATTTTGGAAATAATCCTAATAATTTGTCTTCATTGGGAATAGACAATGGAAACAACCTTTTCCTGTTGGCAAAAAGAATGGAACTTGAACGGCAAAGGTCTTTGACCAACCCCTATGCATTTTGGCCCGGAATAGATCCTACATCTAAGGTATCTAAGCCGGATATTGGCCTAGATGATCCAATTCAGCAAGCCAAACTCTTGTCTTCAATCATTGATCATTCTCGTCAAACTTCTCATTCTCAAGGTGCCGACATGTCAGCCATTCTACAAGGCTTGTCTGACAAAGCACCTCCTGGCATTAATGATGTTGCTGGCTGGTCAAAATTTGCTTCACAGTGTGCTTCCGACCCTCTCCAAAGTAAACTTGACTTGCACCATGATCTTAACCTGTCTTCGCAGGCACCTTTTGGTTTCCAACAACAGAGATTGCCACCACAGCCGTCCCTGACAAATTTACTTGCTCAAGCTACTGATAATCCAACCTTAACTCCAGACAAGTTTCTTCCTTCCAGCTTATCTCAAGATCCACAACTGATAAGTAAATTGCAACAACAGCACCTGTTGCAGTTGCATTCTCAAGTGCCTTTCTCTGCACAACAAATGTCGCTGTTGGACAAACTTTTACTACTTAAGCAGCAGCAAAAACAAGAGGAACAACAACAGTTATTACAGCAACAGCAGTTGCTCTCCCAGGTTCTATCAGAGCATCAGTCACGCCAGCATTTTGGTGATCCATCTTTTGGACAGTTACAGGGCGCTCCTATACCTATTGGAAATGCATCTGCTGATCCATCTCAAGTCCAGCTATCACGAGAGAAGTTTCAGATTGGTTCACAGAATCCCTTAAATGTACTAACTGACCGTGCAACTACCTTCGGAAATATGGCTTTGCAAGTTACCCAGGGACCCAGTTACAATGTTAATTCGGAAGATCCGTCCGTTGTTCTTCCGCATCAGATGTTTGGAAATGTTGTTCAGCAGAAGAGTTGGAATGCTGCTCTTCCCGAGCAGCTAAATGATATTCATCCAAAAGATATATTATCTGGATCTAAAGTTGGTGAGGGCTCAGTTTTGCCTGGTTTGACTAGCAAATCAAACGAGGATGTGAATCTTGTACCAACCTCATCTGATAGCCACACTATCAAAGCTTTGGAGCAGATATCAGAGGATGTACCTAGGCTGGATGCAACTGACACATCTTTTGCACCTGATGCTATTGTAGAACCTCTTCCTCTCAAGACTGATGAAGTCTCCGTTGCTATACCACCATCTGAAGTTCGCAATTCCATTCCCGTTAGTGTCCCTGTTGTGAAGGTTGAAGAAGCTAGTATGCCTGTGGAAAAGCTTGAAAGGGATGTATGCAAAGACGATACCTCTTTGGAGACAGAATTGAAAAATGTTGAAGTACAAGAACCTAAAAAATCTTCTGATAAGAAAACCAAGAAGCAAAAATCATCGAAGTTGCTTTCCTCTGACCAGGTCAAGGACTCTAAGAATTCTGCCATTCAGCAATCAAAGCAATCAAAAAGTGGAAAACCAGAAAATGATTTGAAATTGAAGGCAGATAATATTGTCGGAAAATCAAGTGATACATCTTCTTCTCCTCAGAAGACCAGGGATGGGGATGCCAAAATTGCAATTGTGGATAGTCAACCAGTTCAAAGCTCTGCCTCTTCTATAAATTCTTGGAACGATGTTGAAACTGTTCAAGTGAAGGAGGACTCCAGACTAATTGGGTCTGACTCTGTGCCTAACTCACAAATTCAATCTGGTCAAAGAGCTTGGAAAGTTGCTTCAAGTTTCAAGCCAAAGTCGTTATTGGAAATTCAGGAGGAAGAGCAGAAAATGGCACATACAGAAACTGCTGTATCAGAGATTTCAACTTCTATCAACTCTGTGAGTTTATCAACTCCTTGGGCTGGGATTGTGAGCAATTTGGACCCAAAAGCTTCCAGAGAAATTCATAAAGATTCTGTGAATTCCGAACCAAGTGAGAAACATGAAAGTTTATTGAATTCAAGAAGTAGAAAGAGCCAATTGCATGATCTGCTGGCGGAAGATGATATGGAGAAGTCCGGTGCAGGTGATGTACGTGTTTCTGACTCTGCTCAGATTGCTTCTTCTCCTCAGGTCATGGCCGCCCAAGCAGAACCTATGGATGACAATTTTATTGAGGCAAAAGACACCAAAAAGAGCCGTAAGAAGTCTGCTAAGGCTAAGGCTGTTGGTACAAAGGCCACCTCTTCAGTCCCTTCTGCTGATGTGCCTGTTGGTTCAAGCCCCATTGAAAAAGGGAAAATCTCCCGCCAGACACAGCAGGAGAAGGATGCAATGCCTGCAATTCCTTCTGGACCTTCTTTTGGTGATTTTGTTCTATGGAAGGGAGAAGCTGCTAACGTGGCCCCTGCTCCAGCATGGTCCAGTGACTCTGGGAAGGTCCCCAAACCCACATCTTTGAGGGATATTCAGAAGGAGCAGGAAAGAAAAATCTCCTCCGCTCAGCATTCTCATCAAATCCCTACTCCCCAAAAGGCTCAGCCAACTCAGGTTGGTCGTAGCAGCAGCACTAGTACGCCTTCCTGGGCTCTTTCTGCTTCTTCACCATCGAAGGCTGCATCATCCCCCCTTCAGAATGTTCCTTCTCAGTCAAAATATGGAGGTGATGATGACCTATTTTGGGGGCCCATTGAGTCGAAGCAAGAAAATCAGCAGGTTGATGTCCGTCTTGGGAGTCACGGAAGCTGGGGAAATAGAAACACCCCTGCAAAAGCAGCAGCTTCGACTGGGTTATTAAGCCGACAAAAATCATCTGGTGGCAAAGCTGACTATCTTTCATCCTCACCTGCACAGTCGTCTCAGAAAGGCAAACAAGATTCAGTTACCAAGCATTCAGAAGCTATGGGCTTCCGCGACTGGTGTGAGAGTGAATGTGTAAGGCTCATTGGAACAAAAGACACAAGTTTCCTGGAATTCTGCTTGAAGCAATCAAGATCTGAGGCAGAGCTGCTTTTGATAGAGAACCTTGGTTCATATGATCCTGACCATGAGTTCATTGATCAATTCCTCAATTTCAAGGAGTTGCTCCCAGCAGATGTCCTTGAAATTGCATTTCAAAGCCGGAACGATAGGAAGGTATCTGCAATAGCTGCCCGAGAAGTGAATTCTGGCAATGCTGGTGGAGATTTGGACCCTGATGTCCCTGGCCGCGATGGGTCTGCAAAGGGTGGAGGAAAAAAGAAAGGAAAGAAAGGGAAGAAGGTTAGTCCATCAGTTTTGGGTTTCAATGTAGTTAGTAACCGAATTATGATGGGTGAGATTCAGACGGTTGAAGATTAG 5514 44.12 MELKQRLQLESNKTVNVQGSENPIPLSPQWLLPKPGESKHGIGTGENHFNQQPAYGNHMDMMKGSENYEDMNEIQKKKEVFRPSLTDAEIGRRDRWHDEERENNSSMRKDRWRDGEKEAGDSRKMDRWTEDSSARVFRESRRGPSERWSDSSNRDNVHYDQRRESKWNTRWGPDDKETEGFREKRMDSGRDGDLHLDKNFSHVSNYGKNDRDGDHYRPWRSSASQGRGKGEPTHHQTQTPIKQVAAFSHRGRADNTPPTYSIGRGIISSGVNPTNSIYSSSNSLGASSEKSGREPYHYKYSRTKLLDVYRTTNLTSQPGVKDGFVPVPTLTLDDPLEPLALCAPTAEEMTFLKGIDKGEIVSSGAPQVSKDGRNSSEFTQTRRTKLGVSPSPGSREDLSHGFDDYNDDKDDSTTKPGHTNYSEVSTERQVPYHRPQSKIEAIQEHMAHASSKFKSEAFREDDNAMRKADEVPVNRESSVKGGSTVHPGSTWDASSLEQPRNTSMPDWRDNPNNISSGTPDKGWLQPSKNLNDGWGSNTATPSYPKDNPKWQTGEESIIRRQLSGILDKEQLARKTYQSAPEDLQLHYIDPSGAIQGPFSGADIIQWFEGGYFGLDLPVRPANPPNDLPFSALGDVMPHLRSKAKPPPGFSGPKPNEFADTIGNASYGSLGKLHTGLNEIDTLRNEARHKHGSTVEAENRFLESLMSGNLGSSPLEKSAFSEGVPGYFGNNPNNLSSLGIDNGNNLFLLAKRMELERQRSLTNPYAFWPGIDPTSKVSKPDIGLDDPIQQAKLLSSIIDHSRQTSHSQGADMSAILQGLSDKAPPGINDVAGWSKFASQCASDPLQSKLDLHHDLNLSSQAPFGFQQQRLPPQPSLTNLLAQATDNPTLTPDKFLPSSLSQDPQLISKLQQQHLLQLHSQVPFSAQQMSLLDKLLLLKQQQKQEEQQQLLQQQQLLSQVLSEHQSRQHFGDPSFGQLQGAPIPIGNASADPSQVQLSREKFQIGSQNPLNVLTDRATTFGNMALQVTQGPSYNVNSEDPSVVLPHQMFGNVVQQKSWNAALPEQLNDIHPKDILSGSKVGEGSVLPGLTSKSNEDVNLVPTSSDSHTIKALEQISEDVPRLDATDTSFAPDAIVEPLPLKTDEVSVAIPPSEVRNSIPVSVPVVKVEEASMPVEKLERDVCKDDTSLETELKNVEVQEPKKSSDKKTKKQKSSKLLSSDQVKDSKNSAIQQSKQSKSGKPENDLKLKADNIVGKSSDTSSSPQKTRDGDAKIAIVDSQPVQSSASSINSWNDVETVQVKEDSRLIGSDSVPNSQIQSGQRAWKVASSFKPKSLLEIQEEEQKMAHTETAVSEISTSINSVSLSTPWAGIVSNLDPKASREIHKDSVNSEPSEKHESLLNSRSRKSQLHDLLAEDDMEKSGAGDVRVSDSAQIASSPQVMAAQAEPMDDNFIEAKDTKKSRKKSAKAKAVGTKATSSVPSADVPVGSSPIEKGKISRQTQQEKDAMPAIPSGPSFGDFVLWKGEAANVAPAPAWSSDSGKVPKPTSLRDIQKEQERKISSAQHSHQIPTPQKAQPTQVGRSSSTSTPSWALSASSPSKAASSPLQNVPSQSKYGGDDDLFWGPIESKQENQQVDVRLGSHGSWGNRNTPAKAAASTGLLSRQKSSGGKADYLSSSPAQSSQKGKQDSVTKHSEAMGFRDWCESECVRLIGTKDTSFLEFCLKQSRSEAELLLIENLGSYDPDHEFIDQFLNFKELLPADVLEIAFQSRNDRKVSAIAAREVNSGNAGGDLDPDVPGRDGSAKGGGKKKGKKGKKVSPSVLGFNVVSNRIMMGEIQTVED 1837
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 38947844 38958228 + Maker00033765 Lcy13g1995 652300

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1995 1837 SMART gyf_5 583 638 IPR003169 GO:0005515(InterPro)
Lcy13g1995 1837 MobiDBLite consensus disorder prediction 397 416 - -
Lcy13g1995 1837 MobiDBLite consensus disorder prediction 1559 1610 - -
Lcy13g1995 1837 MobiDBLite consensus disorder prediction 1374 1515 - -
Lcy13g1995 1837 MobiDBLite consensus disorder prediction 1 295 - -
Lcy13g1995 1837 MobiDBLite consensus disorder prediction 1251 1265 - -
Lcy13g1995 1837 MobiDBLite consensus disorder prediction 63 218 - -
Lcy13g1995 1837 MobiDBLite consensus disorder prediction 1375 1421 - -
Lcy13g1995 1837 Pfam GYF domain 586 621 IPR003169 GO:0005515(InterPro)
Lcy13g1995 1837 MobiDBLite consensus disorder prediction 417 432 - -
Lcy13g1995 1837 Coils Coil 941 961 - -
Lcy13g1995 1837 MobiDBLite consensus disorder prediction 1780 1814 - -
Lcy13g1995 1837 MobiDBLite consensus disorder prediction 261 289 - -
Lcy13g1995 1837 Gene3D - 570 650 IPR035445 -
Lcy13g1995 1837 MobiDBLite consensus disorder prediction 226 244 - -
Lcy13g1995 1837 SUPERFAMILY GYF domain 574 639 IPR035445 -
Lcy13g1995 1837 MobiDBLite consensus disorder prediction 360 550 - -
Lcy13g1995 1837 MobiDBLite consensus disorder prediction 477 550 - -
Lcy13g1995 1837 CDD GYF 582 639 IPR003169 GO:0005515(InterPro)
Lcy13g1995 1837 MobiDBLite consensus disorder prediction 438 474 - -
Lcy13g1995 1837 MobiDBLite consensus disorder prediction 8 25 - -
Lcy13g1995 1837 MobiDBLite consensus disorder prediction 1190 1217 - -
Lcy13g1995 1837 MobiDBLite consensus disorder prediction 1527 1620 - -
Lcy13g1995 1837 MobiDBLite consensus disorder prediction 1218 1236 - -
Lcy13g1995 1837 MobiDBLite consensus disorder prediction 1635 1689 - -
Lcy13g1995 1837 ProSiteProfiles GYF domain profile. 582 633 IPR003169 GO:0005515(InterPro)
Lcy13g1995 1837 MobiDBLite consensus disorder prediction 367 388 - -
Lcy13g1995 1837 MobiDBLite consensus disorder prediction 1190 1270 - -
Lcy13g1995 1837 MobiDBLite consensus disorder prediction 1635 1683 - -
Lcy13g1995 1837 PANTHER GYF DOMAIN-CONTAINING PROTEIN 11 1837 - -
Lcy13g1995 1837 MobiDBLite consensus disorder prediction 1544 1558 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1995 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1995 Lcy-Chr13:38947844 Lcy3g1493 Lcy-Chr3:41792352 1.41E-23 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g930 Blo01g01558 . Bda01g00536 Bda03g00257 Bpe02g00397 Bpe04g00211 Bma04g00206 Bma01g02315 Cmo05g00241 Cmo12g00428 . . . Car12g00452 Sed11g1026 . Cpe07g00430 Bhi04g00258 Tan02g1949 Cmetu03g2269 . . . Lcy13g1995 Cla08g01498 Cam08g1988 Cec08g1563 Cco08g1700 Clacu08g1678 . Cre08g1461 Cone4ag1904 Cone7ag1818 . . . . . Cme03g01966 . . . . . . . . . . . Cma12g00478 Cma05g00232 Car05g00194 . Cpe11g00193 . . . . . . . . . . . . . . . Lsi08g01403 Csa02g02043 Chy03g01470 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004078 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 3 1 44