Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1999 ATGGCGAATCCGCTGAAAGGCAAGCTCCTTTTGATCTTTTTTCTATTCGTTTTCGCTATTCCCCATGTTTCTAGGGTATTTGTATGTAGTTCTAGCTCCTCTGAGCAGAATGAACCTGAACCTGAAGTCCCTTTTGAAATTAGACAGTATGATTTACTGAAAAATCTTGAAGAGTTATTGAGAAACCTTAGCGATGTAGTTTCTAAGTTGGAGCTCAGGTTATCTGATATTCCCACGGCGGTGCATAGAGATAAGAAATTGAATACTGATGCTTTGAGAAAAGTAGTGCCTGAGGTGGTTGGTTCGGGCGGTGGAAAAGAAGATGGTATCAGTGATGGTGGAGATGGCGGTTTGGATAATGAAATTCAAAATGGGGGTAGAGCGAGAGCTGTTTCAGTGACCAAATACAGTCCATTTTGGTCGGAGAGGTTCCACTTTTTGTCGGCTGTGAAACTGGATTCTGATGCTACTTGCATCAATGTCTTGCCGCTTAGGGATTTTGAGGGGCATAGCAAGTTTGTTGCGGTGGGAGATGAGAGAGGCAGAGTTTATGTCGTTACGAGAAATGGGGATGTTGTGGTTGAGCTTCGTACTGTGTCTGAATCGCCAATTACGGCAATGCTTTCCTATATGTCTATTTATAAGAACGAGACCCTTCTGGTTACTGGGCACAAGAATGGGGCGATCTTGATGCATCGGATTTGGGAGGGATCGAATGGGGAGGAGTTGAATTCGCTTTTCATGGAACATGTTGTGGAATTTGTGGCGACTGATGGTCGGGAGGACGAGTCGCCAATTTCCATATTGGAAGTGCATCATGTTGGGAGGACCAGGTACATTCTGTCTTCAGATGCCAGGGGAAAGATCAAGGTTTTCAGAGAAAATGGGACAGTTTATGGTTCTGTCATGCCGACGAGTAGGCCGATAGCATTCTTGAAGCAGAGGCTTTTGTTCTTGACAGAAAGTGGTGCTGGCTCGTTGGATTTGAGAAGCATGAAACTTAGGGAGTCTGAATGTGAGGGACTGAATTATTCTCTTGCTCGGAATTACGTGTTTGATGCCACGGAGCGATCTAAAGCCTATGGTTTAACATCAGATGGTGATTTAATTCATGTTTTGTTGTTGGGGGATATAATGAACTTTAAATGCAGGGTTAGATCTAAGAGGAAGTTTGAGTTTGACGAACCACTTGTCTTTCAGGCAATCAAGGGTTATTTGCTTGTGATCAGCAATGAAAAGGTTCACATTTTCAATGTGTCATCTCAGCACTACGTTAGAGTCGGTGCACCGAGGCATCTGTTTTCTGCTAGTCTAGATGAGATCAGGTCATCTTTCCTGAATAACCAGAATTTGGATTTAGAGTCTGAAGGAAATTTTATACCCTTAATATCTAGTGACCATGAGAAGCTTGTGGTTATCGGACTCGGGGGTGGATATGTAGGAATGTATCGCTCTAATCTTCCAATTTTTAAAGGGGAGTTCAATACAATGCTCTGGACAAGCCCTGTTCTGTTTTTCATACTCTTTCTCTTTGGAGCTTGGCAATTCTTTGCGAAGAAAAAGGAGGCACTCACTTCATGGGGACCGGACGACCCTTTTACTGCCACTTCACCTACTACTGGAGCTCCACTGGTAACTGGATCCAGCGAGCGAGCATCTTTCATAGACACTGCTTCGAGAAGTACTGATGTGATGGATCTCCGGGGTGGCAGTGGCTTGAGAGGACCACCAAGGCGTTATGGTTCTCCAACGGGGTATCCTGGTGGGGCAACAAGTTCCTTTAGGCCAGCTACAACAAGTGACCATAACTCAAGACCAGCTGCAGTTGATCCAAATTATAGAGCAGCTTCGGAGCTAAAATTTAGGGGCTCGCCTTTAGAGCCTCCAGGATTTCCGAAACGACGGGAGCCTTTATTTGCAAACAATCAGGTGGTCAATCAGGTGGTGGATGAAAGCAGTTAA 1962 44.7 MANPLKGKLLLIFFLFVFAIPHVSRVFVCSSSSSEQNEPEPEVPFEIRQYDLLKNLEELLRNLSDVVSKLELRLSDIPTAVHRDKKLNTDALRKVVPEVVGSGGGKEDGISDGGDGGLDNEIQNGGRARAVSVTKYSPFWSERFHFLSAVKLDSDATCINVLPLRDFEGHSKFVAVGDERGRVYVVTRNGDVVVELRTVSESPITAMLSYMSIYKNETLLVTGHKNGAILMHRIWEGSNGEELNSLFMEHVVEFVATDGREDESPISILEVHHVGRTRYILSSDARGKIKVFRENGTVYGSVMPTSRPIAFLKQRLLFLTESGAGSLDLRSMKLRESECEGLNYSLARNYVFDATERSKAYGLTSDGDLIHVLLLGDIMNFKCRVRSKRKFEFDEPLVFQAIKGYLLVISNEKVHIFNVSSQHYVRVGAPRHLFSASLDEIRSSFLNNQNLDLESEGNFIPLISSDHEKLVVIGLGGGYVGMYRSNLPIFKGEFNTMLWTSPVLFFILFLFGAWQFFAKKKEALTSWGPDDPFTATSPTTGAPLVTGSSERASFIDTASRSTDVMDLRGGSGLRGPPRRYGSPTGYPGGATSSFRPATTSDHNSRPAAVDPNYRAASELKFRGSPLEPPGFPKRREPLFANNQVVNQVVDESS 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 38974783 38976744 + Maker00033719 Lcy13g1999 652304

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1999 653 SUPERFAMILY WD40 repeat-like 163 438 IPR036322 GO:0005515(InterPro)
Lcy13g1999 653 PANTHER OS06G0115200 PROTEIN 1 646 IPR045288 -
Lcy13g1999 653 MobiDBLite consensus disorder prediction 102 123 - -
Lcy13g1999 653 MobiDBLite consensus disorder prediction 586 606 - -
Lcy13g1999 653 Gene3D - 122 312 IPR015943 GO:0005515(InterPro)
Lcy13g1999 653 Coils Coil 53 73 - -
Lcy13g1999 653 MobiDBLite consensus disorder prediction 566 609 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1999 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1999 Lcy-Chr13:38974783 Lcy13g2007 Lcy-Chr13:39044262 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g922 . . . . . . . . Cmo05g00237 . . . . Car12g00455 Sed11g1022 . Cpe07g00433 Bhi04g00264 Tan02g1944 Cmetu03g2300 . Hepe10g0656 . Lcy13g1999 Cla08g01503 Cam08g1993 Cec08g1568 Cco08g1705 Clacu08g1683 . Cre08g1466 Cone4ag1900 Cone7ag1813 . . . . . Cme03g01970 Blo17g00807 Blo18g00820 . Bda01g01490 Bpe02g01686 . Bma01g00766 . . . . Cma12g00482 Cma05g00228 Car05g00190 . Cpe11g00190 . . . . . . . . . . . . . . . Lsi08g01408 Csa02g02037 Chy03g01476 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003112 2 2 1 1 1 2 2 2 2 2 2 2 2 1 2 1 2 2 2 2 2 1 1 2 2 3 1 2 2 1 52