Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2000 ATGGTATCGGCAGAGAACAATCCTCCAACGGCGGCGGTCGCGGCATCTTCCTCGCCGGGAGTTGAAACCGAGATCATCGACGCCGTGGCTCCGGCGAAGAAGAAGCGGAATCTCCCCGGAATGCCAGATCCAGCGGCGGAAGTGATAGCTCTGTCGCCGAAATCGCTTCTAGCGACGAACCGATTCGTGTGCGAGATCTGCAACAAAGGATTCCAGCGAGACCAGAACCTGCAGCTCCACCGGCGCGGCCACAACCTGCCTTGGAAGCTTCGGCAGCGGACGAGCAATGAGATTCGGAAACGAGTCTACATCTGTCCAGAGCCGTCTTGCGTCCATCACAATCCGGCAAGGGCACTCGGCGACCTGACCGGCATCAAAAAGCACTTCTCCAGAAAGCACTGCGAGAAGAAGTGGAAGTGCGAGCGGTGCTCGAAGAAGTATGCCGTTCAATCGGATTGGAAAGCGCACATGAAAACCTGCGGAACTAGAGAGTATAAATGCGACTGCGGAACCTTGTTTTCCAGGAGGGACAGTTTCATTACGCATCGGGCTTTCTGTGATGCTTTGGCGTTCGCAAGCTCGGATTCGAACGCGCTGGCTGTCGCGGCGGCGGCGGTTGGTTCTTCGCCACTGACGCCATTGGCCACCGTGCTGTCGCCTGCTTTGTCCATTCACAGCTCAGAAGTACCGGACTATCCCATGGGACCTCCGCCATTAACGCCCGCAATCACAAGCTTCACCTCCGCCACCTCCGCCTCCCCCTCCAACGCAACCAACCCAACAAACGGCAGTGCCATCAGTGGCGGTACAAGCGTTTTCGCCGGTGTATTTGCTTCTCCTCCCGCTGTTAGCAGTGCCCCTCATCAACCCGGCCATCAAATCGCCACCTCCGGCAGCCGGTCAGACGGCGCCAATAATTCCCCAACCACCGCCGTTGAGCCCACGTCGCTCTCTCTCTCAACCTCCCTCTTCCTCTCCTGTAGAGCCTCAGCCTCGTCAGGCTCGGGCTCGGGCTCAGGCTCAGGCTCGTCCATCTTTCACGACCATCCACCACATTACTCGCCGTCGCCCCAGCCGGCCGCCATGTCCGCAACCGCCCTGCTGCAGAAAGCTGCCCAAATGGGCGTCACCGCCTCCAACGCCGCATCTTTGTTGCGCTGCTCCGGGCTCTCAATGTCGCCGTCTCCCGGCCAAGCCACTTCCGCCGCCGCTATGACGGCTGGACTCGGACTTGGATTTGGAAGCGAGCCCATGACAAGGGATCTACTTGGACTCGGCATGGGCGGTGGCGGTGGCGGAGGTGGGGCTTCCGGCGGCGGATTTTCTGCTCTTTTCGCGTCGTTCGGTGGTGGGTGTGACGTTGAAGCTGCTGCACCTTATTACGGCGGCGGCGGCGGCGGGAGTAATGGTTTATGA 1416 59.96 MVSAENNPPTAAVAASSSPGVETEIIDAVAPAKKKRNLPGMPDPAAEVIALSPKSLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSNEIRKRVYICPEPSCVHHNPARALGDLTGIKKHFSRKHCEKKWKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAFASSDSNALAVAAAAVGSSPLTPLATVLSPALSIHSSEVPDYPMGPPPLTPAITSFTSATSASPSNATNPTNGSAISGGTSVFAGVFASPPAVSSAPHQPGHQIATSGSRSDGANNSPTTAVEPTSLSLSTSLFLSCRASASSGSGSGSGSGSSIFHDHPPHYSPSPQPAAMSATALLQKAAQMGVTASNAASLLRCSGLSMSPSPGQATSAAAMTAGLGLGFGSEPMTRDLLGLGMGGGGGGGGASGGGFSALFASFGGGCDVEAAAPYYGGGGGGSNGL 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 38981648 38984475 + Maker00033688 Lcy13g2000 652305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2000 471 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Lcy13g2000 471 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 137 161 - -
Lcy13g2000 471 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Lcy13g2000 471 Gene3D Classic Zinc Finger 62 106 - -
Lcy13g2000 471 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 16 386 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lcy13g2000 471 SUPERFAMILY beta-beta-alpha zinc fingers 61 159 IPR036236 -
Lcy13g2000 471 FunFam protein indeterminate-domain 5, chloroplastic-like 116 195 - -
Lcy13g2000 471 Pfam Zinc-finger of C2H2 type 62 84 IPR013087 -
Lcy13g2000 471 MobiDBLite consensus disorder prediction 289 314 - -
Lcy13g2000 471 MobiDBLite consensus disorder prediction 241 264 - -
Lcy13g2000 471 MobiDBLite consensus disorder prediction 232 264 - -
Lcy13g2000 471 FunFam protein indeterminate-domain 12-like 41 109 - -
Lcy13g2000 471 MobiDBLite consensus disorder prediction 281 314 - -
Lcy13g2000 471 SMART c2h2final6 138 158 IPR013087 -
Lcy13g2000 471 SMART c2h2final6 103 133 IPR013087 -
Lcy13g2000 471 SMART c2h2final6 62 84 IPR013087 -
Lcy13g2000 471 MobiDBLite consensus disorder prediction 335 361 - -
Lcy13g2000 471 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 99 133 - -
Lcy13g2000 471 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 164 197 - -
Lcy13g2000 471 Gene3D Classic Zinc Finger 117 193 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2000 Lcy-Chr13:38981648 Lcy1g0725 Lcy-Chr1:6207818 1.18E-109 dispersed
Lcy5g2358 Lcy-Chr5:46416795 Lcy13g2000 Lcy-Chr13:38981648 1.93E-70 transposed
Lcy13g2000 Lcy-Chr13:38981648 Lcy9g2183 Lcy-Chr9:46486329 4.75E-131 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19432 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2000 K25869 - csv:101217471 616.305