Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2004 ATGACCTCCGACGGGGCCACTTCTGCCTCCACTTGCCGCCGGAAGCCTTCCTGGAGGGAGCGGGAGAATAATCGGACCAGAGAACGGCGGAGGAGAGCCATCGCGGCTAAGATTTACTCCGGCCTCAGGGCTCAGGGCAACTTCAATTTGCCTAAACATTGTGACAATAACGAGGTCCTTAAAGCCCTCTGTGCTGAAGCTGGCTGGACCGTCGAAGATGACGGAACCACTTATCGGAAGGGATGCAAGCCTCCCCCAATTGACATTGTTGGCACTTCCACCAAGATCACCCCCTACTCTTCCCAAAATCCAAGCCCATTGTCTTCTTCATTCCCTAGTCCTATGGCATCCTACCAAGTCAGCCCCTCCTCCTCCTCATTCCCGAGCCCGTCCCGTTTGGACGCCAACAATCCGTCGAACCTCATTCCATATCTTCGCCAAGCGATTCCGATATCCCTTCCTCCACTTAGAATCTCAAACAGTGCTCCTGTGACCCCTCCCCTTTCATCCCCAGCCTCAAGGACTCCACAGCCATTCCCCAATTGGGAGGTCACTGCTAAAGAATCCTTGTCCTCCTTGAATTACCCTTTCTTTGCAGTATCTGCCCCGGCTAGCCCAACTCGCCCTCAGCTGCATACTCCTGCCACAATCCACGAATGCGACGAATCTGAATCATCCACCAATGATTCCAGTCAATGGGCACTTCTCCGTGCCTATGCGCCTTCTTCATTGACAATGCCAACATCTCCCACATTCAACCTTGTGAAGCCTGCTGACCAGCATGCTCTGCACGGTGGTTTCATCAAAGAAAATGGACGAGGAAACGAATTCGAGTTCTTGGGCTGCAAGGTTAAGCCCTGGGAAGGGGAGAAGATCCACGAAGTCGGATTGGAGGATTTAGAGCTCACGCTCGGTAGCAGTAAGGCTCGAAGCTAA 936 53.21 MTSDGATSASTCRRKPSWRERENNRTRERRRRAIAAKIYSGLRAQGNFNLPKHCDNNEVLKALCAEAGWTVEDDGTTYRKGCKPPPIDIVGTSTKITPYSSQNPSPLSSSFPSPMASYQVSPSSSSFPSPSRLDANNPSNLIPYLRQAIPISLPPLRISNSAPVTPPLSSPASRTPQPFPNWEVTAKESLSSLNYPFFAVSAPASPTRPQLHTPATIHECDESESSTNDSSQWALLRAYAPSSLTMPTSPTFNLVKPADQHALHGGFIKENGRGNEFEFLGCKVKPWEGEKIHEVGLEDLELTLGSSKARS 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39013944 39016838 - Maker00033643 Lcy13g2004 652309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2004 311 MobiDBLite consensus disorder prediction 14 30 - -
Lcy13g2004 311 MobiDBLite consensus disorder prediction 93 132 - -
Lcy13g2004 311 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 12 257 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
Lcy13g2004 311 MobiDBLite consensus disorder prediction 1 30 - -
Lcy13g2004 311 Pfam BES1/BZR1 plant transcription factor, N-terminal 13 136 IPR008540 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2004 Lcy-Chr13:39013944 Lcy1g0738 Lcy-Chr1:6323803 1.68E-102 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19433 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2004 K14503 - csv:101219853 533.487