Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2004 ATGACCTCCGACGGGGCCACTTCTGCCTCCACTTGCCGCCGGAAGCCTTCCTGGAGGGAGCGGGAGAATAATCGGACCAGAGAACGGCGGAGGAGAGCCATCGCGGCTAAGATTTACTCCGGCCTCAGGGCTCAGGGCAACTTCAATTTGCCTAAACATTGTGACAATAACGAGGTCCTTAAAGCCCTCTGTGCTGAAGCTGGCTGGACCGTCGAAGATGACGGAACCACTTATCGGAAGGGATGCAAGCCTCCCCCAATTGACATTGTTGGCACTTCCACCAAGATCACCCCCTACTCTTCCCAAAATCCAAGCCCATTGTCTTCTTCATTCCCTAGTCCTATGGCATCCTACCAAGTCAGCCCCTCCTCCTCCTCATTCCCGAGCCCGTCCCGTTTGGACGCCAACAATCCGTCGAACCTCATTCCATATCTTCGCCAAGCGATTCCGATATCCCTTCCTCCACTTAGAATCTCAAACAGTGCTCCTGTGACCCCTCCCCTTTCATCCCCAGCCTCAAGGACTCCACAGCCATTCCCCAATTGGGAGGTCACTGCTAAAGAATCCTTGTCCTCCTTGAATTACCCTTTCTTTGCAGTATCTGCCCCGGCTAGCCCAACTCGCCCTCAGCTGCATACTCCTGCCACAATCCACGAATGCGACGAATCTGAATCATCCACCAATGATTCCAGTCAATGGGCACTTCTCCGTGCCTATGCGCCTTCTTCATTGACAATGCCAACATCTCCCACATTCAACCTTGTGAAGCCTGCTGACCAGCATGCTCTGCACGGTGGTTTCATCAAAGAAAATGGACGAGGAAACGAATTCGAGTTCTTGGGCTGCAAGGTTAAGCCCTGGGAAGGGGAGAAGATCCACGAAGTCGGATTGGAGGATTTAGAGCTCACGCTCGGTAGCAGTAAGGCTCGAAGCTAA 936 53.21 MTSDGATSASTCRRKPSWRERENNRTRERRRRAIAAKIYSGLRAQGNFNLPKHCDNNEVLKALCAEAGWTVEDDGTTYRKGCKPPPIDIVGTSTKITPYSSQNPSPLSSSFPSPMASYQVSPSSSSFPSPSRLDANNPSNLIPYLRQAIPISLPPLRISNSAPVTPPLSSPASRTPQPFPNWEVTAKESLSSLNYPFFAVSAPASPTRPQLHTPATIHECDESESSTNDSSQWALLRAYAPSSLTMPTSPTFNLVKPADQHALHGGFIKENGRGNEFEFLGCKVKPWEGEKIHEVGLEDLELTLGSSKARS 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39013944 39016838 - Maker00033643 Lcy13g2004 652309

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2004 311 MobiDBLite consensus disorder prediction 14 30 - -
Lcy13g2004 311 MobiDBLite consensus disorder prediction 93 132 - -
Lcy13g2004 311 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 12 257 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
Lcy13g2004 311 MobiDBLite consensus disorder prediction 1 30 - -
Lcy13g2004 311 Pfam BES1/BZR1 plant transcription factor, N-terminal 13 136 IPR008540 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2004 K14503 - - csv:101219853 533.487
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2004 Lcy-Chr13:39013944 Lcy1g0738 Lcy-Chr1:6323803 1.68E-102 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g898 Blo01g01552 . Bda01g00543 Bda03g00253 Bpe02g00402 Bpe04g00207 Bma04g00201 Bma01g02306 Cmo05g00234 Cmo12g00435 . . . Car12g00460 Sed10g1328 . Cpe07g00438 Bhi04g00271 Tan02g1938 Cmetu03g0632 . Hepe10g0663 . Lcy13g2004 Cla08g01510 Cam08g1999 Cec08g1575 Cco08g1711 Clacu08g1689 . Cre08g1472 Cone4ag1892 Cone7ag1804 . . . . . Cme03g01975 . . . . . . . . . . . Cma12g00489 . . . Cpe11g00187 . . . . . . . . . . . . . . . Lsi08g01414 Csa02g02032 Chy03g01481 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy13g2004 . 1 312 BZR Transcription Factor Family AT1G75080 60.2 1.5e-87 320.5
Lcy1g0738 . 28 347 BZR Transcription Factor Family AT1G75080 54.0 1.0e-75 281.2
Lcy13g2004 . 1 312 BZR Transcription Factor Family AT1G19350 58.9 8.2e-86 314.7
Lcy1g0738 . 28 345 BZR Transcription Factor Family AT1G19350 54.3 3.6e-73 272.7
Lcy1g0738 . 6 347 BZR Transcription Factor Family AT3G50750 52.9 1.1e-72 270.8
Lcy13g2004 . 1 312 BZR Transcription Factor Family AT3G50750 50.8 5.2e-62 235.3
Lcy5g1802 . 108 357 BZR Transcription Factor Family AT4G18890 52.9 2.6e-50 196.1
Lcy6g0647 . 147 396 BZR Transcription Factor Family AT4G18890 52.8 3.4e-50 195.7
Lcy6g0647 . 1 396 BZR Transcription Factor Family AT1G78700 61.4 2.3e-109 392.9
Lcy5g1802 . 1 357 BZR Transcription Factor Family AT1G78700 63.2 9.7e-100 360.9
Lcy1g0738 . 28 228 BZR Transcription Factor Family AT4G36780 67.8 4.0e-59 225.7
Lcy13g2004 . 33 204 BZR Transcription Factor Family AT4G36780 59.9 2.4e-40 163.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007707 2 1 1 2 2 1 1 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19433 None None None None Lcy TF