Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2009 ATGGAGGAGACCTTTCGCTGTAGTCTATGTACTGCTCGTAAATTTGATGCTAAGATCCGCTTCGCCGTTGTTCTGTTTGAGCTCTTTTTGGGGTTGACAATGATTTGGAAGGAGAGGAAGTTCTGCAATTGTTGGACTGGCATTGCTAGTGCACGTTTGAAGCTGTCTTGGGTGTGCATTTTGCTTCTTCTGGCTTTGGATGTTACTTATGCAAAATCTGAAGATCGCCAGCTAGAAAGGGGAGCTGAAAGCATTGTTTCACACTCCTGCATCCATGACCAGATACTTGAGCAAAAAAGGCGACCTGGGCTCAAGGTATACTCTGTTACGCCCCAAGTTTACGATGTGTCCAGTTCTGCAAAACCACTTCATAGAAAGGGTAGAGCATTGCTTGGAGTCTTAGAATTATCAGATCAGCAAAAAAATGCAAAACAACCTATCAGAATATATCTGAATTATGATGCTGTTGGTCACTCACCTGATAGAGATTGCCAAAAAGTTGGCGACATTGTTAAGCTCGGAGAACCTCCTGTCACTGCTTCTTTTCTGGGCTCTCCTTCTTGCAATCCTCACAGCAACCCTCCAATTTCGGGTGACTGCTGGTATAATTGTACTTTAGATGATATATCTGGGGAGGACAAAAGGCATCGTCTGCACAAGGCATTAGGTCAGACAGCAGATTGGTTCAGAAGAGCATTAGCTGTTGAACCTGTGAAAGGGAACTTGCGTTTAAGTGGATACTCTGCTTGTGGGCAGGACGGAGGTGTACAACTTCCACGTGAATATGTTGAAGAGGGTATTCCCAATGCAGACTTGGTTCTTTTAGTGACAACAAGGCCTACCACTGGGAACACACTTGCTTGGGCTGTTGCATGTGAACGTGATCAATGGGGCCGTGCAATTGCTGGACACGTGAATGTTGCACCTCGGCATTTGACTGCCAAAGCAGAAACTTTACTTTCAGCTACTCTTATACATGAGGTTATGCACGTCCTTGGTTTTGATCCACACGCCTTTGCCCATTTTAGAGATGAGAGGAAAAGAAGGCGTAGTCAGGTAACAGAACAGGTCTTGGATGAACGACTTGGGCGCACAGTTACTCGGGTGGTGCTTCCACGTGTTGTTATGCATTCACGATATCATTATGGGGCATTTTCAGAGAATTTCACGGGTTTAGAGCTGGAAGATGGAGGAGGACGTGGCACTTCAGGATCTCACTGGGAGAAAAGGCTTCTGATGAATGAAATTATGACTGGTTCAGTTGATACAAGATCTGTTGTCTCCAAAATGACACTGGCTTTATTGGAAGATAGCGGATGGTACCAGGCCAACTATAGTATGGCAGATCGTCTTGATTGGGGTCGCAACCAAGGAAATGATTTTGTCACTTCCCCCTGCAACCTCTGGAAGGGGGCATACCAGTGCAACACAACACAGTTGTCGGGATGTACATATAATAGGGAGGCAGAGGGTTACTGTCCAATTGTTAGCTATAGTGGGGATCTCCCTCAGTGGGCTCGATATTTCCCCCAGCCTAACAAGGGTGGACAATCATCATTGGCTGATTATTGTACTTACTTTGTGGCTTACTCGGATGGGTCGTGCACTGACACCAACAGTGCACGTGCACCTGATAGAATGTTGGGTGAAGTACGAGGAAGTAACTCAAGGTGTATGGCCTCATCCCTAGTCAGGACTGGTTTTGTAAGAGGTTCTATGACCCAAGGAAATGGTTGTTATCAGCATCGGTGCATTAACAATTCATTGGAGGTACCTTGGGAGTGGCTGTTGATGGTATGTGGAAAGTATGCCCTGAAGCTGGTGGATCAGTTCAGTTCCCTGGCTTTAATGGCAAGTGAATTAGTCTGCCCTGCATATCATGAACTTTGTAGCAAAGACTCGGTTTCAGTGCCTGGGAAGTGCCCCAATACTTGCAATTTCAATGGAGATTGTGTGGATGGGAAGTGTTTTTGCTTTCTGGGCTATCATGGACATGATTGTAGCAAACGATCATGTCCTAATAACTGTAGTGGACACGGGAGGTGTCTTTCTAATGGACTTTGTGAATGTGGAAATGGTTACACTGGCATCGATTGCTCCACTGCTATTTGCGATGAGCAATGTAGCCTCCATGGAGGTGTCTGTGATAATGGCGTTTGTGAGTTCCGTTGCTCAGATTATGCTGGCTATTCGTGCCAGAACAGCTCCAGGCTTCTATCAAGTCTCTCTGTTTGCAAAAATGTATTACAAAGGGATATGACTGGCCAACACTGTGCGCCCAGTGAACCGAGTATACTACAGCAGCTTGAGGAAGTTGTTGTCATGCCAAATTACCACCGTTTGTTTCCCGGTGGTGCCCGGAAACTTTTTAACATCTTCGGCGGTAGTTACTGTGATGCAGCTGCTAAGCAGCTGGCTTGCTGGATTTCAATACAAAAGTGTGATCAAGATGGTGACAACAGGCTCCGAGTATGCCACTCTGCTTGTCAGTCATACAATCTAGCCTGTGGGGCATCGCTCGACTGCTCTGATCAGACCCTCTTCAGCAGTGAGGAAGAAGGTGAAGGGCAGTGCACAGGCTCCGGTGAGATCAAATTGTCATGGTTTAATCGACTGCGCAGTAACTTATTCGTAAGTAACAGCTCCTCAAAAGGAACATCTGTAAAATAG 2670 46.1 MEETFRCSLCTARKFDAKIRFAVVLFELFLGLTMIWKERKFCNCWTGIASARLKLSWVCILLLLALDVTYAKSEDRQLERGAESIVSHSCIHDQILEQKRRPGLKVYSVTPQVYDVSSSAKPLHRKGRALLGVLELSDQQKNAKQPIRIYLNYDAVGHSPDRDCQKVGDIVKLGEPPVTASFLGSPSCNPHSNPPISGDCWYNCTLDDISGEDKRHRLHKALGQTADWFRRALAVEPVKGNLRLSGYSACGQDGGVQLPREYVEEGIPNADLVLLVTTRPTTGNTLAWAVACERDQWGRAIAGHVNVAPRHLTAKAETLLSATLIHEVMHVLGFDPHAFAHFRDERKRRRSQVTEQVLDERLGRTVTRVVLPRVVMHSRYHYGAFSENFTGLELEDGGGRGTSGSHWEKRLLMNEIMTGSVDTRSVVSKMTLALLEDSGWYQANYSMADRLDWGRNQGNDFVTSPCNLWKGAYQCNTTQLSGCTYNREAEGYCPIVSYSGDLPQWARYFPQPNKGGQSSLADYCTYFVAYSDGSCTDTNSARAPDRMLGEVRGSNSRCMASSLVRTGFVRGSMTQGNGCYQHRCINNSLEVPWEWLLMVCGKYALKLVDQFSSLALMASELVCPAYHELCSKDSVSVPGKCPNTCNFNGDCVDGKCFCFLGYHGHDCSKRSCPNNCSGHGRCLSNGLCECGNGYTGIDCSTAICDEQCSLHGGVCDNGVCEFRCSDYAGYSCQNSSRLLSSLSVCKNVLQRDMTGQHCAPSEPSILQQLEEVVVMPNYHRLFPGGARKLFNIFGGSYCDAAAKQLACWISIQKCDQDGDNRLRVCHSACQSYNLACGASLDCSDQTLFSSEEEGEGQCTGSGEIKLSWFNRLRSNLFVSNSSSKGTSVK 889
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39076518 39082870 + Maker00033731 Lcy13g2009 652314

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2009 889 Pfam Leishmanolysin 202 632 IPR001577 GO:0004222(InterPro)|GO:0006508(InterPro)|GO:0007155(InterPro)|GO:0016020(InterPro)
Lcy13g2009 889 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 142 635 - -
Lcy13g2009 889 FunFam leishmanolysin-like peptidase isoform X2 469 528 - -
Lcy13g2009 889 FunFam Peptidase M8, leishmanolysin 140 331 - -
Lcy13g2009 889 Gene3D - 139 331 - -
Lcy13g2009 889 ProSiteProfiles EGF-like domain profile. 668 700 IPR000742 -
Lcy13g2009 889 Gene3D Leishmanolysin , domain 2 341 466 - -
Lcy13g2009 889 FunFam leishmanolysin-like peptidase isoform X2 342 466 - -
Lcy13g2009 889 PANTHER LEISHMANOLYSIN-LIKE PEPTIDASE 76 831 IPR001577 GO:0004222(InterPro)|GO:0005737(PANTHER)|GO:0006508(InterPro)|GO:0007155(InterPro)|GO:0008233(PANTHER)|GO:0016020(InterPro)
Lcy13g2009 889 FunFam Teneurin transmembrane protein 2 671 702 - -
Lcy13g2009 889 Gene3D Leishmanolysin domain 3 469 528 - -
Lcy13g2009 889 ProSitePatterns EGF-like domain signature 2. 688 699 IPR000742 -
Lcy13g2009 889 Gene3D Laminin 640 669 - -
Lcy13g2009 889 Gene3D Laminin 671 702 - -
Lcy13g2009 889 SMART egf_5 629 668 IPR000742 -
Lcy13g2009 889 SMART egf_5 671 700 IPR000742 -
Lcy13g2009 889 ProSitePatterns EGF-like domain signature 1. 688 699 IPR000742 -
Lcy13g2009 889 PRINTS Leishmanolysin (M8) metalloprotease family signature 429 458 IPR001577 GO:0004222(InterPro)|GO:0006508(InterPro)|GO:0007155(InterPro)|GO:0016020(InterPro)
Lcy13g2009 889 PRINTS Leishmanolysin (M8) metalloprotease family signature 276 305 IPR001577 GO:0004222(InterPro)|GO:0006508(InterPro)|GO:0007155(InterPro)|GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2009 K01404 - - csv:101217702 1660.2
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g890 . . Bda01g00546 Bda03g00251 Bpe02g00405 Bpe04g00204 . Bma01g02303 Cmo05g00229 Cmo12g00440 . . . Car12g00464 Sed11g1006 . Cpe07g00442 Bhi04g00277 Tan02g1927 Cmetu03g1599 . Hepe10g0673 . Lcy13g2009 Cla08g01515 Cam08g2005 Cec08g1581 Cco08g1716 Clacu08g1694 . Cre08g1477 Cone4ag1890 Cone7ag1801 . . . . . Cme03g01980 . . . . . . . . . . . Cma12g00495 Cma05g00223 Car05g00185 . Cpe11g00184 . . . . . . . . . . . . . . . Lsi08g01418 Csa02g02025 Chy03g01485 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004346 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 42