Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2012 ATGTCGAGCAAACGGGACCAACACAACGTCCACCCGGAACAAGAGTCGGGTCCCAGCCTCGCCCTCGGGCCGAGGCCGACCCCAGGCTTATGCCCGGGGCACGCCCGGTGCTCCTGGGTCGAGCCTCCGAGGTGTGGCAAGCACCACACCGGTGTGCAGTTTCTTTTAGTTTTGCAGGTCACGTCTTCTCTAGCCTCTACAAATTCACTGTTGGTGTCTGTCATGGCACGGCTGCGTGAAGCTTCCATCTTCAAACGTATATTTTCAGCATTTCTGTCAGACGCGTTCGTCTTCGGTTTCAGATTCTCTTCTTCATCGATCGGAACGCGGGATCGGCCGGTAGGGCGTGTAGAAATGTCTAGCGGGTTTGGGGAATCGACGAGTAGGCAACCCCAAAGCCCTTCGTGTTCCGACAACAATGGTGATGCTAGTAATTTTGAGTGCAATATTTGCCTGGATTTAGCTCAAGATCCTATTGTAACCCTATGCGGTCATCTTTTTTGTTGGCCATGCCTTTATAAGTGGCTGCACATTCATTCCCATCCCCAGGAATGTCCAGTTTGTAAGGCTATCATAGAAGAGCAAAAATTGGTTCCCTTATATGGTAGGGGAAAGACATCGACTGACCCGAGATCGAAAAGTATTCCAGGGATTAATATTCCTAATCGTCCTGCGGGACAGAGACCTGAAGCAGCAGGTCCTCCCCCTGAACCAAATCCTTTTCCTCACAATGGGTTTGGATTCATGGGAGGTCTTGGAGGGTTTGCCCCAATGGCGTCGACGAGGTTTGGTAATTTTACATTGTCTGCAGCTTTTGGTGGTCTTGTCCCATCTTTATTCAACTTTCAGATGCATGGATATGCAGATCCAAGCATGTATGGTGCAGGTGCTAACTTTCCTTATGGGTTTCCTAACATGTTTCATGGTAGCCATGGTCACGCCCATGGATACTATCACCATCTCCGTCAAGGTCAGCAAGATTATTACCTGAAGCGGCTGTTTTTGTTTATTGGTTTCTGTGTTCTTCTTGCCCTAATCTGGCAATAG 1047 49.38 MSSKRDQHNVHPEQESGPSLALGPRPTPGLCPGHARCSWVEPPRCGKHHTGVQFLLVLQVTSSLASTNSLLVSVMARLREASIFKRIFSAFLSDAFVFGFRFSSSSIGTRDRPVGRVEMSSGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIHSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEPNPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGANFPYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLFLFIGFCVLLALIWQ 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39097005 39102318 + Maker00033707 Lcy13g2012 652317

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2012 348 ProSiteProfiles Zinc finger RING-type profile. 148 189 IPR001841 -
Lcy13g2012 348 MobiDBLite consensus disorder prediction 121 138 - -
Lcy13g2012 348 ProSitePatterns Zinc finger RING-type signature. 163 172 IPR017907 -
Lcy13g2012 348 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 126 339 IPR045103 GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:0071712(PANTHER)
Lcy13g2012 348 MobiDBLite consensus disorder prediction 113 138 - -
Lcy13g2012 348 Pfam Zinc finger, C3HC4 type (RING finger) 148 188 IPR018957 GO:0046872(InterPro)
Lcy13g2012 348 SMART ring_2 148 188 IPR001841 -
Lcy13g2012 348 MobiDBLite consensus disorder prediction 1 25 - -
Lcy13g2012 348 SUPERFAMILY RING/U-box 144 201 - -
Lcy13g2012 348 CDD RING-HC_AtRMA-like 146 190 - -
Lcy13g2012 348 MobiDBLite consensus disorder prediction 202 240 - -
Lcy13g2012 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 202 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2012 K10666 - - csv:101221027 420.624
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2012 Lcy-Chr13:39097005 Lcy1g1061 Lcy-Chr1:9577335 9.33E-89 dispersed
Lcy13g2012 Lcy-Chr13:39097005 Lcy5g1890 Lcy-Chr5:41732724 7.81E-29 transposed
Lcy13g2012 Lcy-Chr13:39097005 Lcy9g1291 Lcy-Chr9:37595083 1.74E-28 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g886 . . Bda01g00547 . Bpe02g00406 . Bma04g00198 Bma01g02302 Cmo05g00227 . . . . . Sed11g1002 . . Bhi04g00282 Tan02g1923 Cmetu03g0100 . Hepe10g0677 . Lcy13g2012 Cla08g01518 Cam08g2009 Cec08g1585 Cco08g1720 Clacu08g1698 . Cre08g1481 Cone4ag1888 Cone7ag1799 Cone17ag1319 Cone20ag0156 . . . Cme03g01984 . . . . . . . . . . . . Cma05g00220 Car05g00180 . Cpe11g00182 . . . . . . . . . . . . . . . Lsi08g01421 Csa02g02021 Chy03g01490 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy3g1199 . 77 589 C3H Transcription Factor Family AT2G31510 73.3 5.0e-225 777.7
Lcy4g1368 . 112 286 C3H Transcription Factor Family AT2G31510 75.6 2.8e-66 250.4
Lcy4g1367 . 701 807 C3H Transcription Factor Family AT2G31510 77.9 2.1e-50 197.6
Lcy4g1363 . 774 866 C3H Transcription Factor Family AT2G31510 77.4 8.7e-44 175.6
Lcy3g1199 . 60 547 C3H Transcription Factor Family AT2G31770 56.7 8.4e-165 577.8
Lcy4g1368 . 113 260 C3H Transcription Factor Family AT2G31770 61.7 1.6e-43 174.9
Lcy3g1199 . 60 554 C3H Transcription Factor Family AT2G31760 55.1 1.7e-162 570.1
Lcy4g1368 . 113 245 C3H Transcription Factor Family AT2G31760 64.2 1.2e-43 175.3
Lcy1g1205 . 8 167 C3H Transcription Factor Family AT5G06490 52.5 7.0e-45 177.9
Lcy1g1205 . 8 167 C3H Transcription Factor Family AT5G06490 52.5 7.0e-45 177.9
Lcy10g2079 . 1 222 C3H Transcription Factor Family AT3G02290 61.3 1.6e-72 270.0
Lcy2g0769 . 1 335 C3H Transcription Factor Family AT1G11020 70.5 2.5e-132 469.2
Lcy13g0045 . 59 218 C3H Transcription Factor Family AT1G50440 75.6 1.2e-67 253.8
Lcy1g2340 . 8 305 C3H Transcription Factor Family AT5G08750 57.9 2.3e-89 326.6
Lcy6g0352 . 1 536 C3H Transcription Factor Family AT3G16090 62.8 1.4e-171 600.1
Lcy10g2079 . 1 220 C3H Transcription Factor Family AT5G38895 56.1 5.3e-69 258.8
Lcy13g2012 . 134 345 C3H Transcription Factor Family AT1G19310 66.4 1.0e-79 293.9
Lcy1g1061 . 16 225 C3H Transcription Factor Family AT1G19310 59.8 6.1e-69 258.1
Lcy1g0754 . 9 257 C3H Transcription Factor Family AT2G22120 50.9 1.4e-78 290.8
Lcy13g1620 . 58 168 C3H Transcription Factor Family AT5G07040 64.9 6.1e-39 157.9
Lcy2g0454 . 1 337 C3H Transcription Factor Family AT1G18470 75.6 1.6e-150 530.0
Lcy10g0895 . 11 405 C3H Transcription Factor Family AT1G18470 58.3 2.4e-127 453.0
Lcy10g1463 . 74 300 C3H Transcription Factor Family AT1G68200 51.7 6.0e-51 198.7
Lcy3g1199 . 60 547 C3H Transcription Factor Family AT2G31770 56.7 8.4e-165 577.8
Lcy4g1368 . 113 260 C3H Transcription Factor Family AT2G31770 61.7 1.6e-43 174.9
Lcy3g1199 . 60 554 C3H Transcription Factor Family AT2G31760 55.1 1.7e-162 570.1
Lcy4g1368 . 113 245 C3H Transcription Factor Family AT2G31760 64.2 1.2e-43 175.3
Lcy9g1080 . 119 349 C3H Transcription Factor Family AT5G55970 69.4 1.6e-94 343.6
Lcy1g2340 . 8 321 C3H Transcription Factor Family AT5G63780 51.9 4.9e-84 308.9
Lcy5g0587 . 1 426 C3H Transcription Factor Family AT3G58030 54.8 1.9e-111 400.2
Lcy9g1080 . 108 413 C3H Transcription Factor Family AT4G26580 63.4 6.2e-110 394.8
Lcy1g1641 . 28 584 C3H Transcription Factor Family AT5G01960 59.1 4.4e-161 565.1
Lcy7g1098 . 1 559 C3H Transcription Factor Family AT5G01960 50.6 3.6e-139 492.3
Lcy8g1343 . 63 217 C3H Transcription Factor Family AT2G04240 57.1 4.9e-44 174.9
Lcy6g0752 . 136 574 C3H Transcription Factor Family AT5G45290 51.5 1.1e-95 348.2
Lcy2g0339 . 76 368 C3H Transcription Factor Family AT5G05810 51.9 1.5e-73 274.2
Lcy10g2219 . 12 218 C3H Transcription Factor Family AT5G05830 55.2 5.8e-58 221.5
Lcy5g0151 . 70 231 C3H Transcription Factor Family AT5G05830 63.6 4.9e-57 218.4
Lcy1g1521 . 31 170 C3H Transcription Factor Family AT5G05830 62.9 9.5e-45 177.6
Lcy2g0847 . 455 842 C3H Transcription Factor Family AT4G28890 50.9 1.0e-96 351.3
Lcy10g2079 . 1 222 C3H Transcription Factor Family AT5G15790 59.6 3.6e-72 268.9
Lcy10g2248 . 1 272 C3H Transcription Factor Family AT3G55530 79.9 1.5e-114 409.8
Lcy3g1640 . 27 299 C3H Transcription Factor Family AT1G63900 75.2 5.7e-117 417.9
Lcy11g1838 . 10 394 C3H Transcription Factor Family AT2G44580 53.4 2.5e-118 422.9
Lcy13g2012 . 143 268 C3H Transcription Factor Family AT1G74990 59.8 1.3e-40 163.3
Lcy9g1923 . 3 315 C3H Transcription Factor Family AT5G20910 63.3 7.5e-110 394.4
Lcy6g0352 . 119 536 C3H Transcription Factor Family AT1G65040 55.0 1.1e-111 400.6
Lcy1g1061 . 17 227 C3H Transcription Factor Family AT2G23780 61.2 1.1e-73 273.9
Lcy13g2012 . 124 347 C3H Transcription Factor Family AT2G23780 56.5 1.4e-68 256.9
Lcy5g0913 . 1 314 C3H Transcription Factor Family AT3G10810 52.7 6.6e-76 282.3
Lcy1g1764 . 145 383 C3H Transcription Factor Family AT3G10810 61.1 6.4e-71 265.8
Lcy12g1628 . 1 168 C3H Transcription Factor Family AT1G63840 59.1 1.8e-46 183.0
Lcy13g0728 . 1 154 C3H Transcription Factor Family AT1G63840 51.9 1.4e-41 166.8
Lcy9g2343 . 4 181 C3H Transcription Factor Family AT1G76410 56.6 1.2e-51 200.3
Lcy6g2365 . 32 171 C3H Transcription Factor Family AT1G76410 60.7 3.6e-43 172.2
Lcy13g1313 . 1 410 C3H Transcription Factor Family AT1G80400 53.3 4.7e-112 402.1
Lcy6g2365 . 27 162 C3H Transcription Factor Family AT2G17450 60.0 3.2e-39 159.1
Lcy3g1199 . 77 589 C3H Transcription Factor Family AT2G31510 73.3 5.0e-225 777.7
Lcy4g1368 . 112 286 C3H Transcription Factor Family AT2G31510 75.6 2.8e-66 250.4
Lcy4g1367 . 701 807 C3H Transcription Factor Family AT2G31510 77.9 2.1e-50 197.6
Lcy4g1363 . 774 866 C3H Transcription Factor Family AT2G31510 77.4 8.7e-44 175.6
Lcy1g1205 . 7 166 C3H Transcription Factor Family AT2G35910 61.7 2.3e-52 203.0
Lcy5g0504 . 6 162 C3H Transcription Factor Family AT2G35910 52.8 1.7e-44 176.8
Lcy5g0512 . 6 162 C3H Transcription Factor Family AT2G35910 52.8 1.7e-44 176.8
Lcy1g2128 . 1 308 C3H Transcription Factor Family AT2G41980 81.8 1.2e-152 536.6
Lcy8g2151 . 162 458 C3H Transcription Factor Family AT2G41980 72.9 3.2e-129 458.8
Lcy6g0069 . 61 318 C3H Transcription Factor Family AT2G41980 81.0 9.3e-129 457.2
Lcy6g0068 . 61 318 C3H Transcription Factor Family AT2G41980 80.6 2.1e-128 456.1
Lcy10g1027 . 48 321 C3H Transcription Factor Family AT2G41980 75.2 3.4e-123 438.7
Lcy7g0691 . 118 471 C3H Transcription Factor Family AT2G41980 59.2 2.6e-115 412.5
Lcy4g0830 . 203 437 C3H Transcription Factor Family AT2G41980 75.7 1.5e-110 396.7
Lcy11g1506 . 121 358 C3H Transcription Factor Family AT3G06140 58.0 1.0e-73 274.6
Lcy5g0283 . 33 329 C3H Transcription Factor Family AT3G09770 58.9 1.7e-86 317.0
Lcy10g0046 . 136 680 C3H Transcription Factor Family AT3G26730 55.7 1.3e-165 580.9
Lcy5g2227 . 59 344 C3H Transcription Factor Family AT3G47990 71.1 5.0e-119 424.9
Lcy2g0651 . 110 396 C3H Transcription Factor Family AT3G47990 65.4 1.7e-114 409.8
Lcy9g2343 . 4 187 C3H Transcription Factor Family AT1G20823 56.5 1.2e-52 203.8
Lcy6g2365 . 30 171 C3H Transcription Factor Family AT1G20823 63.2 3.7e-46 182.2
Lcy8g1080 . 35 223 C3H Transcription Factor Family AT3G18930 57.6 3.0e-45 180.3
Lcy6g2328 . 20 236 C3H Transcription Factor Family AT5G66070 73.7 7.3e-75 277.7
Lcy5g0151 . 9 231 C3H Transcription Factor Family AT2G37950 50.9 1.2e-47 187.2
Lcy5g0241 . 1 262 C3H Transcription Factor Family AT5G02750 54.7 2.6e-69 259.6
Lcy2g0454 . 5 337 C3H Transcription Factor Family AT1G73950 67.3 2.6e-124 443.0
Lcy10g0895 . 12 409 C3H Transcription Factor Family AT1G73950 53.2 4.8e-110 395.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001146 5 2 2 4 3 2 4 2 2 2 2 2 4 2 2 4 2 6 4 2 2 2 2 2 2 2 2 3 2 2 79