Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy13g2012 | ATGTCGAGCAAACGGGACCAACACAACGTCCACCCGGAACAAGAGTCGGGTCCCAGCCTCGCCCTCGGGCCGAGGCCGACCCCAGGCTTATGCCCGGGGCACGCCCGGTGCTCCTGGGTCGAGCCTCCGAGGTGTGGCAAGCACCACACCGGTGTGCAGTTTCTTTTAGTTTTGCAGGTCACGTCTTCTCTAGCCTCTACAAATTCACTGTTGGTGTCTGTCATGGCACGGCTGCGTGAAGCTTCCATCTTCAAACGTATATTTTCAGCATTTCTGTCAGACGCGTTCGTCTTCGGTTTCAGATTCTCTTCTTCATCGATCGGAACGCGGGATCGGCCGGTAGGGCGTGTAGAAATGTCTAGCGGGTTTGGGGAATCGACGAGTAGGCAACCCCAAAGCCCTTCGTGTTCCGACAACAATGGTGATGCTAGTAATTTTGAGTGCAATATTTGCCTGGATTTAGCTCAAGATCCTATTGTAACCCTATGCGGTCATCTTTTTTGTTGGCCATGCCTTTATAAGTGGCTGCACATTCATTCCCATCCCCAGGAATGTCCAGTTTGTAAGGCTATCATAGAAGAGCAAAAATTGGTTCCCTTATATGGTAGGGGAAAGACATCGACTGACCCGAGATCGAAAAGTATTCCAGGGATTAATATTCCTAATCGTCCTGCGGGACAGAGACCTGAAGCAGCAGGTCCTCCCCCTGAACCAAATCCTTTTCCTCACAATGGGTTTGGATTCATGGGAGGTCTTGGAGGGTTTGCCCCAATGGCGTCGACGAGGTTTGGTAATTTTACATTGTCTGCAGCTTTTGGTGGTCTTGTCCCATCTTTATTCAACTTTCAGATGCATGGATATGCAGATCCAAGCATGTATGGTGCAGGTGCTAACTTTCCTTATGGGTTTCCTAACATGTTTCATGGTAGCCATGGTCACGCCCATGGATACTATCACCATCTCCGTCAAGGTCAGCAAGATTATTACCTGAAGCGGCTGTTTTTGTTTATTGGTTTCTGTGTTCTTCTTGCCCTAATCTGGCAATAG | 1047 | 49.38 | MSSKRDQHNVHPEQESGPSLALGPRPTPGLCPGHARCSWVEPPRCGKHHTGVQFLLVLQVTSSLASTNSLLVSVMARLREASIFKRIFSAFLSDAFVFGFRFSSSSIGTRDRPVGRVEMSSGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIHSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEPNPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGANFPYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLFLFIGFCVLLALIWQ | 348 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 39097005 | 39102318 | + | Maker00033707 | Lcy13g2012 | 652317 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy13g2012 | 348 | ProSiteProfiles | Zinc finger RING-type profile. | 148 | 189 | IPR001841 | - | |
Lcy13g2012 | 348 | MobiDBLite | consensus disorder prediction | 121 | 138 | - | - | |
Lcy13g2012 | 348 | ProSitePatterns | Zinc finger RING-type signature. | 163 | 172 | IPR017907 | - | |
Lcy13g2012 | 348 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 126 | 339 | IPR045103 | GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:0071712(PANTHER) | |
Lcy13g2012 | 348 | MobiDBLite | consensus disorder prediction | 113 | 138 | - | - | |
Lcy13g2012 | 348 | Pfam | Zinc finger, C3HC4 type (RING finger) | 148 | 188 | IPR018957 | GO:0046872(InterPro) | |
Lcy13g2012 | 348 | SMART | ring_2 | 148 | 188 | IPR001841 | - | |
Lcy13g2012 | 348 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Lcy13g2012 | 348 | SUPERFAMILY | RING/U-box | 144 | 201 | - | - | |
Lcy13g2012 | 348 | CDD | RING-HC_AtRMA-like | 146 | 190 | - | - | |
Lcy13g2012 | 348 | MobiDBLite | consensus disorder prediction | 202 | 240 | - | - | |
Lcy13g2012 | 348 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 128 | 202 | IPR013083 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy13g2012 | Lcy-Chr13:39097005 | Lcy1g1061 | Lcy-Chr1:9577335 | 9.33E-89 | dispersed | |
Lcy13g2012 | Lcy-Chr13:39097005 | Lcy5g1890 | Lcy-Chr5:41732724 | 7.81E-29 | transposed | |
Lcy13g2012 | Lcy-Chr13:39097005 | Lcy9g1291 | Lcy-Chr9:37595083 | 1.74E-28 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy13g2012 | K10666 | - | csv:101221027 | 420.624 |