Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2012 ATGTCGAGCAAACGGGACCAACACAACGTCCACCCGGAACAAGAGTCGGGTCCCAGCCTCGCCCTCGGGCCGAGGCCGACCCCAGGCTTATGCCCGGGGCACGCCCGGTGCTCCTGGGTCGAGCCTCCGAGGTGTGGCAAGCACCACACCGGTGTGCAGTTTCTTTTAGTTTTGCAGGTCACGTCTTCTCTAGCCTCTACAAATTCACTGTTGGTGTCTGTCATGGCACGGCTGCGTGAAGCTTCCATCTTCAAACGTATATTTTCAGCATTTCTGTCAGACGCGTTCGTCTTCGGTTTCAGATTCTCTTCTTCATCGATCGGAACGCGGGATCGGCCGGTAGGGCGTGTAGAAATGTCTAGCGGGTTTGGGGAATCGACGAGTAGGCAACCCCAAAGCCCTTCGTGTTCCGACAACAATGGTGATGCTAGTAATTTTGAGTGCAATATTTGCCTGGATTTAGCTCAAGATCCTATTGTAACCCTATGCGGTCATCTTTTTTGTTGGCCATGCCTTTATAAGTGGCTGCACATTCATTCCCATCCCCAGGAATGTCCAGTTTGTAAGGCTATCATAGAAGAGCAAAAATTGGTTCCCTTATATGGTAGGGGAAAGACATCGACTGACCCGAGATCGAAAAGTATTCCAGGGATTAATATTCCTAATCGTCCTGCGGGACAGAGACCTGAAGCAGCAGGTCCTCCCCCTGAACCAAATCCTTTTCCTCACAATGGGTTTGGATTCATGGGAGGTCTTGGAGGGTTTGCCCCAATGGCGTCGACGAGGTTTGGTAATTTTACATTGTCTGCAGCTTTTGGTGGTCTTGTCCCATCTTTATTCAACTTTCAGATGCATGGATATGCAGATCCAAGCATGTATGGTGCAGGTGCTAACTTTCCTTATGGGTTTCCTAACATGTTTCATGGTAGCCATGGTCACGCCCATGGATACTATCACCATCTCCGTCAAGGTCAGCAAGATTATTACCTGAAGCGGCTGTTTTTGTTTATTGGTTTCTGTGTTCTTCTTGCCCTAATCTGGCAATAG 1047 49.38 MSSKRDQHNVHPEQESGPSLALGPRPTPGLCPGHARCSWVEPPRCGKHHTGVQFLLVLQVTSSLASTNSLLVSVMARLREASIFKRIFSAFLSDAFVFGFRFSSSSIGTRDRPVGRVEMSSGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIHSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEPNPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGANFPYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLFLFIGFCVLLALIWQ 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39097005 39102318 + Maker00033707 Lcy13g2012 652317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2012 348 ProSiteProfiles Zinc finger RING-type profile. 148 189 IPR001841 -
Lcy13g2012 348 MobiDBLite consensus disorder prediction 121 138 - -
Lcy13g2012 348 ProSitePatterns Zinc finger RING-type signature. 163 172 IPR017907 -
Lcy13g2012 348 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 126 339 IPR045103 GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:0071712(PANTHER)
Lcy13g2012 348 MobiDBLite consensus disorder prediction 113 138 - -
Lcy13g2012 348 Pfam Zinc finger, C3HC4 type (RING finger) 148 188 IPR018957 GO:0046872(InterPro)
Lcy13g2012 348 SMART ring_2 148 188 IPR001841 -
Lcy13g2012 348 MobiDBLite consensus disorder prediction 1 25 - -
Lcy13g2012 348 SUPERFAMILY RING/U-box 144 201 - -
Lcy13g2012 348 CDD RING-HC_AtRMA-like 146 190 - -
Lcy13g2012 348 MobiDBLite consensus disorder prediction 202 240 - -
Lcy13g2012 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 202 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2012 Lcy-Chr13:39097005 Lcy1g1061 Lcy-Chr1:9577335 9.33E-89 dispersed
Lcy13g2012 Lcy-Chr13:39097005 Lcy5g1890 Lcy-Chr5:41732724 7.81E-29 transposed
Lcy13g2012 Lcy-Chr13:39097005 Lcy9g1291 Lcy-Chr9:37595083 1.74E-28 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2012 K10666 - csv:101221027 420.624