Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2016 ATGGCAGCCACTAGATTGTTCAGACCAGTTAGGCCTTCAGCCTCCGTCGGGTCTTCCTCTTCTTCTTCTTCATCTCCAGCGTCGGCGGCGACTGTTAGATGTTTGAGCAAAACGGGGTTAAATTCGAACAATGGCGAACGGTTGATAACTTCCGCCGACGGCGAGAGAAGGCAGATGGTCGCCCTGAAGGCGGCGGTGGCGGCGACTCCGGGGACTGTGGAAACCGAAACCAGAGAACTCGATTTGGGTTCTTTGCTGGCGAGTCTGCTCGTTCAATTGAAGACCGCTGTGGTGAAGACGAAGATTCGGAAACCACAGATTCAGAAGTTCATGGAAAAGATCATAATCGACTGCCGATTCTTCACATTGTTTGCCGTCGCCGGATCTTTACTGGGTTCCATACTTTGTTTCGTTGAGGGCAGCTTTATTGTTGCAGAGTCATATCTGCAGTATTTCAATGATCTTTCACAGAGGTCAGACCAAAGCCATACGGTGGAGCTTCTAATTGAAGCCTTAGATATGTTCCTCGTCGGAACTGCTCTGGTTGTTTTTGGGGTTGGATTGTTCGCGATGTTTGTCGGGTCGGAGAAGATGAAGGAAAAAAACCGGCGTTGGAATTCTGGGTCGAATTTGTTTGGTCTGTTCTACATGAAGAAAATTCCGACGTGGGTGGCAATGGAATCGGTGTCGGAGGCGAAGTCGAAGATCGGACATGCGGTGATGATGATACTTCAAGTGGGTGTATTAGAGAAGTTCAAGAGTATACCTTTGAGCTCTGCCGTTGATCTCGCGTGTTTCGCTGCCGCCGTTCTGATTTCCTCCGCCTCCATCTTCTTCTTATCCAGACTCAACGTGGGCGGAGGAGGCAGTGGAGGTTTCAGGTGA 885 49.94 MAATRLFRPVRPSASVGSSSSSSSSPASAATVRCLSKTGLNSNNGERLITSADGERRQMVALKAAVAATPGTVETETRELDLGSLLASLLVQLKTAVVKTKIRKPQIQKFMEKIIIDCRFFTLFAVAGSLLGSILCFVEGSFIVAESYLQYFNDLSQRSDQSHTVELLIEALDMFLVGTALVVFGVGLFAMFVGSEKMKEKNRRWNSGSNLFGLFYMKKIPTWVAMESVSEAKSKIGHAVMMILQVGVLEKFKSIPLSSAVDLACFAAAVLISSASIFFLSRLNVGGGGSGGFR 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39129526 39130779 - Maker00033739 Lcy13g2016 652321

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2016 294 PANTHER OS06G0710300 PROTEIN 26 284 - -
Lcy13g2016 294 MobiDBLite consensus disorder prediction 13 27 - -
Lcy13g2016 294 Pfam Uncharacterized protein family, UPF0114 115 252 IPR005134 -
Lcy13g2016 294 MobiDBLite consensus disorder prediction 1 27 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2016 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g866 Blo01g01547 . . . Bpe02g00410 . . . . . . . . Car12g00470 Sed10g1307 . Cpe07g00448 Bhi04g00291 Tan02g1917 Cmetu03g1977 . Hepe10g0682 . Lcy13g2016 . . . . . . . Cone4ag1884 Cone7ag1792 . . . . . Cme03g01989 . . . . . . . . . . . Cma12g00500 . . . . . . . . . . . . . . . . . . . . Csa02g02016 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013499 1 1 1 0 1 1 1 1 0 0 0 1 0 1 1 0 1 2 1 1 1 1 1 1 1 0 1 2 2 1 26