Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2017 ATGTCGGCAACCTCCATTACAATCCCTTGTCTTCAACCCCAGTTGCGATTTCCGTCGCAGAAAGCGCCGGCGAGACCTCGTTCGAAGGTTGGGTTTGTTTCCCTACGCCCGATCTACGCCGCCGACCAGTCCTCGTCGTCCGTTAAAGCGCCGCAGCGGACGGTTTCGCCGCCGGAACCGGCGACGAAGCTTCCGTTGAGGAAGATTCCCGGCGACTATGGCCCGCCGGTGTTCGGGCCGTTGAAGGACCGACAGGACTACTTTTACAATCAGGGGAGAGAGGAGTATTTGAAATCTCGAATGCTTCGATACGAATCGACTGTTTACAGAACCAACATGCCACCGGGTCCGTTTATTTCTTCGGATTCTCGAGTTGTCGTTTTACTCGACGGCAAGAGTTTCCCTGTTCTCTTCGACAATTCTAAAGTTGAGAAGAAGGATCTCTTCACCGGAACTTACATGCCTTTAACAGAACTCACCGGCGGCTACCGGGTTCTGTCCTATATTGACCCATCGGAGCCCAATCACGAGAAGCTCAAGCAACTGATCTTCTTCCTCCTCAAGCAAAGCCGGGATAAAATTATGCCGGAATTTCACTCTACTTTTTCGGAGCTGTTCGAGACTCTGGAGAAGGAGTTGGCCACCGTCGGTAGAGCAGGGTACAATGCTCCCGGTGAACAGGCGGCGTTTAATTTCTTGGCTCGGTCTCTCTTCGGCGCCAATCCGGCTGATACCAAATTGGGCCAAGATGCTCCGAAATTGATTTCGAAATGGGTTCTGTTTCAGCTTGGCCCTGTTCTCAGTCTTGGACTCCCCAAGCTCGTCGAGGAGCTCCTCCTCCGGACGGTCCGGCTACCGCCGGCGCTGGTTAAAGCCGATTACCAGCGGCTATACGACTTCTTTTACCAGTCGTCGGAGGCGGTGTTTGCGGAGGCGGATAGATTGGGGATTTCGAGGGAAGAAGCTTGCCACAATTTGCTCTTCACCACTTGCTTCAATTCGTTCGGAGGAATGAAAATCTTCTTCCCCAATATGATCAAATGGATCGGCCGTGCCGGAGCGAATCTCCACACCCAACTCGCACGGGAGATTCGAACCGCCGTTAAAGCCCACGGCGGGAAGATCACGATGGGCGCTATGGAACAGATGCCTCTGATGAAATCGGTGGTGTACGAAGCATTCAGAATCGAGCCGCCGGTTCCGGTTCAGTACGGTCGGGCGAGGAAGGATCTTGTGATCGAAAGCCACGACGCGGCTTTCGAGATCAAAGAAGGGGAAATGATTTGTGGGTACCAGCCATTCGCGACCAGAGATCCGAAAATCTTCGACAGAGCCGACGAATTCGTGCCAGATCGGTTCACTGGCGACGGCGAGGAGTTGCTGCAGCACGTCTTGTGGTCAAACGGACCGGAGAATCAGTCGCCGTCGGTTCAGAACAAGCAGTGCGCCGGAAAAGACTTCATCGTCTTCATCTCTCGCCTTCTGGTGGTGGAACTCTTCCTCCGGTACGACTCCTTCGACATCGAAGTCGGGAACTCGCCGTTGGGCGCCGCCGTGACTGTAACTTCCCTAAAGAAAGCAAGCTTTTGA 1590 53.96 MSATSITIPCLQPQLRFPSQKAPARPRSKVGFVSLRPIYAADQSSSSVKAPQRTVSPPEPATKLPLRKIPGDYGPPVFGPLKDRQDYFYNQGREEYLKSRMLRYESTVYRTNMPPGPFISSDSRVVVLLDGKSFPVLFDNSKVEKKDLFTGTYMPLTELTGGYRVLSYIDPSEPNHEKLKQLIFFLLKQSRDKIMPEFHSTFSELFETLEKELATVGRAGYNAPGEQAAFNFLARSLFGANPADTKLGQDAPKLISKWVLFQLGPVLSLGLPKLVEELLLRTVRLPPALVKADYQRLYDFFYQSSEAVFAEADRLGISREEACHNLLFTTCFNSFGGMKIFFPNMIKWIGRAGANLHTQLAREIRTAVKAHGGKITMGAMEQMPLMKSVVYEAFRIEPPVPVQYGRARKDLVIESHDAAFEIKEGEMICGYQPFATRDPKIFDRADEFVPDRFTGDGEELLQHVLWSNGPENQSPSVQNKQCAGKDFIVFISRLLVVELFLRYDSFDIEVGNSPLGAAVTVTSLKKASF 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39139344 39140933 + Maker00033728 Lcy13g2017 652322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2017 529 Pfam Cytochrome P450 358 456 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy13g2017 529 MobiDBLite consensus disorder prediction 44 67 - -
Lcy13g2017 529 FunFam Allene oxide synthase, chloroplastic 64 529 - -
Lcy13g2017 529 CDD CYP74 98 522 - -
Lcy13g2017 529 SUPERFAMILY Cytochrome P450 65 505 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy13g2017 529 PRINTS E-class P450 group IV signature 383 399 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy13g2017 529 PRINTS E-class P450 group IV signature 482 500 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy13g2017 529 PRINTS E-class P450 group IV signature 436 454 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy13g2017 529 Gene3D Cytochrome P450 60 529 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy13g2017 529 PANTHER CYTOCHROME P450 26 68 503 - GO:0009535(PANTHER)|GO:0009695(PANTHER)|GO:0009941(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2017 Lcy-Chr13:39139344 Lcy3g1081 Lcy-Chr3:35565141 2.23E-177 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2017 K01723 - csv:101221732 927.932