Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2018 ATGATCTCAAAAACCCAACTTCTAAATTCCTCGAATTTCTTTCTCCTTCTTCTAATTTTAACAGTCAAAATCAAAACAGAGGCCAAATGTTCAAAATCCTGCAGCTCCGACAACATCCCTCACGATTTCCCTTACCCGTTCGGCTTCTCCGCCGGCTGCCCAATCCGCCTGAACTGCAGCCACGAGGGCGCCGCCCTCATCGGAGAATTCCCGGTCGAATCCATCAACTCCGACCACATCAAAGTCATCATCAAAGCCAAATGCAACCGCCGCCTCCACACAATCCGCCAATTCTTCAGCTCCCACTATGCTCCGACGGCGAACAACGCCATTCTTTTACAAAACTGTTCGTCTCCGATTGCGACTTGCCTTTTGCCGACGACGATGGTTCAGACCAAATTCGAGTCCCCCAATTGCTCTGTTAACGGCACTAGTATTAGCTGCTACACTCAGAACGGCACCGCTTCCGCCGGTTTCTTGGACTTCAAGAACCTCACCGGGACCCGCTGCGATTACCTTCTTTCGTCGATTTCGGCCGAGGCTCTCAACAGCAACACCTCTGCCGGAATTTCTCTGGAAATTCAGACGGTGGAGCTCGGCTGGTGGCTGCCGGGGACCTGCCACCGGTCCTGCCATCAAGATGCTAATTGTACGGAGCTGTATTCGCCGAGGAATGGGGAGCGGTCTCATCGGTGCCAGTGCCGGGAAGGGTTGGTCGGCGATGGGTATTTGGCCGGCACCGGCTGCCGGAAAGGTGTTTTTATACACAAGAATTCGGAGGCGATTCGGGCTAAACCGAGTGGAACCGAGGCAGCTGGGGGCACTAGGAACCGAACGGAGACTGAAGAGCTCGGCCATGTAGGGGGTTGGGCCAAAAGCCCGATCCCTTTGGCTTTGGCCCGACCCTTTGGCCTGTTCTTCCTCCGGCTTCCGTTTCCTGGCTGTCTCCTTGGGTTGGTATCGCGTTGTCCTCATCAATTCCTCGCATATCGGACTTCAAATTGCCACACGACCAAGTACATCATCGGCGAATGCGGAACACCAACAACAGCCACAAGAACCGCCATCCTCATCGGAACCCTCATCGGCGGAGCCGCCGTACTGGTTACCGTATGTTTATTCTGCTGCTTCATCCGCCGTCGTTCCAGTCTCAGATCCATACACATCAACAAAATCATCAAACGCCGCCTCTCGGAAGCCACCGCCGGCGCCGGCAAATCCACCATCCACCTCTACACCTACAAAGAGATCCAAAAAGCCACCCACAATTTCTCCGACGACCACCACCTCGGCACCGGCGCCTACGCCACCGTCTACGCCGGAAAATTACGCAGCGACGAATGGGTCGCCATCAAACGCCTCAAAAATCGGGACCCCGACACCATCCAACAAGTCCTCAACGAAATCAACCTCATCTCCTCCGTCAGCCACCCGAACCTCGTCCGCCTCCTCGGCTGCTCCATGGGATCCGGCGAACAAATCCTCCTCTACGAATTCATGCCCAACGGCACTCTATCCCAACATTTACAGAAACAGAGAGGCTCCGGCCTCCCCTGGCCCGTCCGCCTCGACATCGCCGTCGAAACCGCCAACGCAATCGCCCATCTCCACTCTGCAATTAACCCACCGATTTTCCACAGAGACATCAAATCCAGCAACATTCTACTCGATCAGAATCTGAAATCGAAAGTGGCGGATTTCGGGCTTTCGAGATTGGGGATGGCCGAAATTTCCCACATCTCGACGGCGCCTCAGGGGACGCCGGGGTATCTCGATCCGCAGTACCATCAGGATTTTCATCTCTCGGACAAGAGCGACGTGTACAGCTTCGGCGTGGTCCTCGTGGAATTGATCACCGCCATGAAAGTGGTAGATTTCAACCGGCCGAAAAACGAGGTGAATTTGGCGGCTCTGGCGACCGATCGGATCGGGAGTGGGCAGCTGAGGGAAATTGTGGATCCGTTGGTGGAGATGGAGAAAGATGAATGGGGGATTTCGTCGGTGGAGAAGGTGGGGGAGGTGGCGTTCAGATGCTTGGCGTTTCATAGGGATGTGAGGCCGTCGATGGTGGAGGTGGCGGCGGAGCTGGAGGAGATACGGCGGAGGCGGTGGGAAGAAGGGGGATTGAAGTGTAAGGAAATGGGGTTAGTAGTTGAAAGTGGGAGCTCGAAGTCGAGCCATGGAGGAGGAGATTACTTTTCAAGAGCCTCTGTTGAAGATTCATGGCGGAGTGAACAGAGCTCGCCGTCGTCCAGTAGTTTGTTAAATAATGTCATTTTATGA 2283 54.71 MISKTQLLNSSNFFLLLLILTVKIKTEAKCSKSCSSDNIPHDFPYPFGFSAGCPIRLNCSHEGAALIGEFPVESINSDHIKVIIKAKCNRRLHTIRQFFSSHYAPTANNAILLQNCSSPIATCLLPTTMVQTKFESPNCSVNGTSISCYTQNGTASAGFLDFKNLTGTRCDYLLSSISAEALNSNTSAGISLEIQTVELGWWLPGTCHRSCHQDANCTELYSPRNGERSHRCQCREGLVGDGYLAGTGCRKGVFIHKNSEAIRAKPSGTEAAGGTRNRTETEELGHVGGWAKSPIPLALARPFGLFFLRLPFPGCLLGLVSRCPHQFLAYRTSNCHTTKYIIGECGTPTTATRTAILIGTLIGGAAVLVTVCLFCCFIRRRSSLRSIHINKIIKRRLSEATAGAGKSTIHLYTYKEIQKATHNFSDDHHLGTGAYATVYAGKLRSDEWVAIKRLKNRDPDTIQQVLNEINLISSVSHPNLVRLLGCSMGSGEQILLYEFMPNGTLSQHLQKQRGSGLPWPVRLDIAVETANAIAHLHSAINPPIFHRDIKSSNILLDQNLKSKVADFGLSRLGMAEISHISTAPQGTPGYLDPQYHQDFHLSDKSDVYSFGVVLVELITAMKVVDFNRPKNEVNLAALATDRIGSGQLREIVDPLVEMEKDEWGISSVEKVGEVAFRCLAFHRDVRPSMVEVAAELEEIRRRRWEEGGLKCKEMGLVVESGSSKSSHGGGDYFSRASVEDSWRSEQSSPSSSSLLNNVIL 760
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39145457 39152924 - Maker00033660 Lcy13g2018 652323

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2018 760 SMART serkin_6 424 705 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g2018 760 Gene3D Phosphorylase Kinase; domain 1 396 499 - -
Lcy13g2018 760 MobiDBLite consensus disorder prediction 266 285 - -
Lcy13g2018 760 ProSitePatterns Serine/Threonine protein kinases active-site signature. 544 556 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy13g2018 760 SUPERFAMILY Protein kinase-like (PK-like) 406 697 IPR011009 -
Lcy13g2018 760 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 24 747 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Lcy13g2018 760 FunFam Wall-associated receptor kinase-like 20 500 708 - -
Lcy13g2018 760 Pfam Protein kinase domain 426 692 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g2018 760 ProSitePatterns Protein kinases ATP-binding region signature. 430 452 IPR017441 GO:0005524(InterPro)
Lcy13g2018 760 ProSiteProfiles Protein kinase domain profile. 424 699 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g2018 760 Gene3D Laminin 208 244 - -
Lcy13g2018 760 Gene3D Transferase(Phosphotransferase) domain 1 500 714 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2018 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2018 Lcy-Chr13:39145457 Lcy1g1044 Lcy-Chr1:9406711 1.87E-189 dispersed
Lcy13g2018 Lcy-Chr13:39145457 Lcy3g0133 Lcy-Chr3:3385088 3.47E-98 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g862 . . . . . . . . Cmo05g00222 Cmo12g00445 . . . Car12g00472 . . Cpe07g00450 Bhi04g00293 . . . . . Lcy13g2018 Cla08g01525 . . . . . . Cone4ag1879 Cone7ag1788 Cone17ag1312 . . . . Cme03g01991 . Blo18g00827 . Bda01g01485 Bpe02g01680 . Bma01g00774 . . . . Cma12g00502 Cma05g00216 Car05g00176 . Cpe11g00178 . . . . . . . . . . . . . . . Lsi08g01427 Csa02g02013 Chy03g01496 .
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65587 None None None None Lcy PK