Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2020 ATGGAGCCGACGCCACCGCCATTGCCGGACCTCTCCTTGCAGATTAGTCCGCCGTCGGATTCCGGCAGCGGCAGCGATCTGAGCCATGAGAATGCTGCTGCTGCTGCTGGGTTTTTTCTACCGGCTAAACCCCACGTGGGATTAGGCGTGGAGCTTGAGAGAAGCTTCAATGGCCGCCATTTTAACGACCACCAACCTCAAATCTATGGCCGCCATTTCAAGAGAGGTGCAAAAATTGGGTTTGGAGTTAAAAGAAGCATTAGAGCTCCGAGAATGAGATGGACTACGACTCTTCATGCCCATTTTGTCCATGCCGTTCAGCTCCTTGGCGGCCATGAAAGGGCAACACCAAAATCTGTATTGGAGCTGATGAATGTGAAGGATCTAACCCTAGCTCATGTAAAGAGCCATTTACAGATGTATAGAACAGTGAAAAGCACTGACAAATCAACTGACTCAGCCTTGAAGAACCAGAGGCAAGAAATTGATGCAAGTGGTGTTTCAAATTGTGAGATCTCTAACCCAAAACTTACAATGTGGAAAAGCCCTGATCAAATGAACTTGTTCTCTTCATCAATGGAGACAAATGAAGAACTGACGAGCAGATGGAGTCAACATCGCAACAAAAGTATTGGAAACAACCAGGAGCAGGAGGACCGACACAATGCAAGCATCAAAATCTCGAGTGGCGTGAAGAAGCAGAGGTTGGAAGGTAGCTGCTTGTCGTTGTGTGATCATGGCGATGTGTATAATAATAATAATAATCTTAATTTAGATTTCACTCTCGGATGTCCAAATTCTCTAACAATTGATTCTAATTCTGAACTTCCTCTTCTCAAATGCTAA 846 45.27 MEPTPPPLPDLSLQISPPSDSGSGSDLSHENAAAAAGFFLPAKPHVGLGVELERSFNGRHFNDHQPQIYGRHFKRGAKIGFGVKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKSTDSALKNQRQEIDASGVSNCEISNPKLTMWKSPDQMNLFSSSMETNEELTSRWSQHRNKSIGNNQEQEDRHNASIKISSGVKKQRLEGSCLSLCDHGDVYNNNNNLNLDFTLGCPNSLTIDSNSELPLLKC 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39171714 39174217 - Maker00033704 Lcy13g2020 652325

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2020 281 MobiDBLite consensus disorder prediction 196 211 - -
Lcy13g2020 281 NCBIfam myb-like DNA-binding domain, SHAQKYF class 90 143 IPR006447 GO:0003677(InterPro)
Lcy13g2020 281 FunFam Myb family transcription factor 88 146 - -
Lcy13g2020 281 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 266 IPR044847 GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0010158(InterPro)
Lcy13g2020 281 MobiDBLite consensus disorder prediction 196 225 - -
Lcy13g2020 281 MobiDBLite consensus disorder prediction 1 28 - -
Lcy13g2020 281 SUPERFAMILY Homeodomain-like 87 144 IPR009057 -
Lcy13g2020 281 MobiDBLite consensus disorder prediction 14 28 - -
Lcy13g2020 281 Gene3D - 89 146 - -
Lcy13g2020 281 Pfam Myb-like DNA-binding domain 91 142 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2020 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2020 Lcy-Chr13:39171714 Lcy6g2249 Lcy-Chr6:47099200 1.67E-36 dispersed
Lcy13g2020 Lcy-Chr13:39171714 Lcy9g2153 Lcy-Chr9:46140999 1.01E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g841 . Blo12g00936 . . . . . . Cmo05g00220 Cmo12g00449 . Cma09g00194 . Car12g00477 Sed01g2622 Cpe06g00132 Cpe07g00452 Bhi04g00296 Tan02g1912 Cmetu04g2692 . Hepe10g0690 . Lcy13g2020 Cla08g01528 Cam08g2020 Cec08g1594 Cco08g1731 Clacu08g1709 . Cre08g1490 Cone4ag1544 Cone7ag1407 Cone17ag1309 Cone20ag0163 Lsi04g01607 Csa03g04154 Chy04g00565 Cme03g01993 . Blo18g00828 . Bda01g01484 Bpe02g01679 . Bma01g00775 . . . Cmo09g00190 Cma12g00506 Cma05g00213 Car05g00175 Car09g00164 Cpe11g00176 Cpe02g00150 Bhi09g02029 . . . . Mch11g0241 . Cla05g01991 Cam05g2142 Cec05g2157 Cco05g2205 Clacu05g2133 Cmu05g2006 Cre05g2130 Lsi08g01429 Csa02g02010 Chy03g01499 Cme04g00674
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy11g1775 . 12 317 G2-like Transcription Factor Family AT3G24120 51.5 1.0e-63 241.1
Lcy8g1657 . 22 167 G2-like Transcription Factor Family AT3G24120 61.7 7.9e-40 161.8
Lcy12g0279 . 1 190 G2-like Transcription Factor Family AT5G16560 56.1 6.7e-42 169.1
Lcy12g1970 . 188 389 G2-like Transcription Factor Family AT5G16560 50.7 5.7e-41 166.0
Lcy12g1970 . 196 389 G2-like Transcription Factor Family AT4G17695 50.3 1.5e-36 151.0
Lcy13g2020 . 8 151 G2-like Transcription Factor Family AT5G42630 64.2 2.2e-42 169.9
Lcy9g2153 . 10 182 G2-like Transcription Factor Family AT5G42630 58.2 1.1e-41 167.5
Lcy10g0975 . 20 261 G2-like Transcription Factor Family AT1G25550 56.3 1.8e-54 210.3
Lcy7g0438 . 193 434 G2-like Transcription Factor Family AT1G25550 50.2 5.8e-53 205.3
Lcy1g1774 . 1 303 G2-like Transcription Factor Family AT5G05090 57.0 2.0e-74 276.6
Lcy5g0800 . 1 287 G2-like Transcription Factor Family AT5G05090 57.5 5.3e-72 268.5
Lcy11g1775 . 12 317 G2-like Transcription Factor Family AT3G24120 51.5 1.0e-63 241.1
Lcy8g1657 . 22 167 G2-like Transcription Factor Family AT3G24120 61.7 7.9e-40 161.8
Lcy8g1657 . 1 333 G2-like Transcription Factor Family AT1G79430 55.8 2.3e-78 290.0
Lcy1g1774 . 1 303 G2-like Transcription Factor Family AT3G10760 62.6 1.7e-91 333.6
Lcy5g0800 . 1 287 G2-like Transcription Factor Family AT3G10760 58.8 2.5e-87 319.7
Lcy1g1774 . 1 204 G2-like Transcription Factor Family AT2G40970 60.8 1.5e-60 230.3
Lcy12g2089 . 243 460 G2-like Transcription Factor Family AT2G20400 50.2 1.1e-44 178.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012530 0 1 0 0 0 1 3 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 2 1 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19435 None None None None Lcy TF