Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2020 ATGGAGCCGACGCCACCGCCATTGCCGGACCTCTCCTTGCAGATTAGTCCGCCGTCGGATTCCGGCAGCGGCAGCGATCTGAGCCATGAGAATGCTGCTGCTGCTGCTGGGTTTTTTCTACCGGCTAAACCCCACGTGGGATTAGGCGTGGAGCTTGAGAGAAGCTTCAATGGCCGCCATTTTAACGACCACCAACCTCAAATCTATGGCCGCCATTTCAAGAGAGGTGCAAAAATTGGGTTTGGAGTTAAAAGAAGCATTAGAGCTCCGAGAATGAGATGGACTACGACTCTTCATGCCCATTTTGTCCATGCCGTTCAGCTCCTTGGCGGCCATGAAAGGGCAACACCAAAATCTGTATTGGAGCTGATGAATGTGAAGGATCTAACCCTAGCTCATGTAAAGAGCCATTTACAGATGTATAGAACAGTGAAAAGCACTGACAAATCAACTGACTCAGCCTTGAAGAACCAGAGGCAAGAAATTGATGCAAGTGGTGTTTCAAATTGTGAGATCTCTAACCCAAAACTTACAATGTGGAAAAGCCCTGATCAAATGAACTTGTTCTCTTCATCAATGGAGACAAATGAAGAACTGACGAGCAGATGGAGTCAACATCGCAACAAAAGTATTGGAAACAACCAGGAGCAGGAGGACCGACACAATGCAAGCATCAAAATCTCGAGTGGCGTGAAGAAGCAGAGGTTGGAAGGTAGCTGCTTGTCGTTGTGTGATCATGGCGATGTGTATAATAATAATAATAATCTTAATTTAGATTTCACTCTCGGATGTCCAAATTCTCTAACAATTGATTCTAATTCTGAACTTCCTCTTCTCAAATGCTAA 846 45.27 MEPTPPPLPDLSLQISPPSDSGSGSDLSHENAAAAAGFFLPAKPHVGLGVELERSFNGRHFNDHQPQIYGRHFKRGAKIGFGVKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKSTDSALKNQRQEIDASGVSNCEISNPKLTMWKSPDQMNLFSSSMETNEELTSRWSQHRNKSIGNNQEQEDRHNASIKISSGVKKQRLEGSCLSLCDHGDVYNNNNNLNLDFTLGCPNSLTIDSNSELPLLKC 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39171714 39174217 - Maker00033704 Lcy13g2020 652325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2020 281 MobiDBLite consensus disorder prediction 196 211 - -
Lcy13g2020 281 NCBIfam myb-like DNA-binding domain, SHAQKYF class 90 143 IPR006447 GO:0003677(InterPro)
Lcy13g2020 281 FunFam Myb family transcription factor 88 146 - -
Lcy13g2020 281 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 266 IPR044847 GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0010158(InterPro)
Lcy13g2020 281 MobiDBLite consensus disorder prediction 196 225 - -
Lcy13g2020 281 MobiDBLite consensus disorder prediction 1 28 - -
Lcy13g2020 281 SUPERFAMILY Homeodomain-like 87 144 IPR009057 -
Lcy13g2020 281 MobiDBLite consensus disorder prediction 14 28 - -
Lcy13g2020 281 Gene3D - 89 146 - -
Lcy13g2020 281 Pfam Myb-like DNA-binding domain 91 142 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2020 Lcy-Chr13:39171714 Lcy6g2249 Lcy-Chr6:47099200 1.67E-36 dispersed
Lcy13g2020 Lcy-Chr13:39171714 Lcy9g2153 Lcy-Chr9:46140999 1.01E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19435 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2020 - - - 0.0