Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2022 ATGGCTATTCGTGTTACTCTCTCCTACTCTGGCTATGTCGCCCAAAACCTAGCCTCCTCCACCGGCCTTCGGGCCGGTAACTGCCGCGTCTTTCAGGAGTTTTGGGTCCGATCATGTATTTTTGGCTCCAGCCATAATCCGGACCTCAAATCTGCTGGAAGCGCGCGCTATTATCGGTCCGATAGCCGGCGGTTCAAGCCGAGTTGCTCCGTTGAGAAGCCAACTTCTATGTACAGCACTCTCGCCGGAGAAATGGTTGGGGAAAACCCCAAGAGTCCCATGGTTCTGGGTTTGATGTCGATGCTCAAATCGATGGCCTCTGCTTCTGGTTCTTCTTCGATCTCTACGGGGATTTTTGGGGTTTCTTCGTTTAAGGCCACTTCGATTATACCCTTTTTACAAGGGCCGAAGTGGCTTCCCGGTTACGATATACAGTCTCATGTAAGGGACGATGTGGATAAAGGCGGAACAGTTTGTGGTGATTATGATGAAAGTGGGAGCAATCAGTTTTATGAGAATGATTTTGAGAAGAGCAGCTGGGTTTCGCGCATGTTGAGTACCTATTCCGAAGATGCAAAGGCTCTCTTCACGGCTTTGACTGTTAGTGTGCTCTTTAAATCGTTCTTGGCGGAGCCGAAATCGATTCCTTCTTCTTCCATGTATCCTACTCTGGAAGTTGGGGATCGTGTTTTAGCGGAAAAGGTTTCATACTTTTTCAGGAAACCTGAAGTTTCAGACATAGTGATCTTTAAAGCTCCTAAAATCTTGCAGGCCTTTGGAGTTAGTTCAAGTGAGGTGTTTATTAAGAGAGTTGTGGCTACGTCTGGGGACGTGGTTGAAGTAAGTGTTCTTCAAACTTATAACATCGTTTCTTTTATATCTCCAATGCTGAAGATTAATGGGGAACCAAATATAGTTACAGTTCGGAATGGGAAATTGGTGGTAAATGGTGTTGTTCAAGATGAGGACTTCGTCTTAGAGCCAATTGCTTATGAGATGGATCCAATGCTTGTGCCTGAAGGTTTTGTGTACGTAATGGGAGACAACCGTAACAATAGTTGTGATTCTCATAACTGGGGTCCTCTCCCAATAGAAAATATTGTAGGTAGATCATTATTCAAGTATTGGCCTCCCTCCAAGGAATCCAGTATGGTAAATGAACCACATGCAAGGAAGATTAATCTGGGGATTTCCTGA 1197 45.2 MAIRVTLSYSGYVAQNLASSTGLRAGNCRVFQEFWVRSCIFGSSHNPDLKSAGSARYYRSDSRRFKPSCSVEKPTSMYSTLAGEMVGENPKSPMVLGLMSMLKSMASASGSSSISTGIFGVSSFKATSIIPFLQGPKWLPGYDIQSHVRDDVDKGGTVCGDYDESGSNQFYENDFEKSSWVSRMLSTYSEDAKALFTALTVSVLFKSFLAEPKSIPSSSMYPTLEVGDRVLAEKVSYFFRKPEVSDIVIFKAPKILQAFGVSSSEVFIKRVVATSGDVVEVSVLQTYNIVSFISPMLKINGEPNIVTVRNGKLVVNGVVQDEDFVLEPIAYEMDPMLVPEGFVYVMGDNRNNSCDSHNWGPLPIENIVGRSLFKYWPPSKESSMVNEPHARKINLGIS 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39212581 39216280 + Maker00033705 Lcy13g2022 652327

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2022 398 Gene3D Umud Fragment, subunit A 205 393 - -
Lcy13g2022 398 NCBIfam signal peptidase I 193 377 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
Lcy13g2022 398 SUPERFAMILY LexA/Signal peptidase 207 383 IPR036286 -
Lcy13g2022 398 PRINTS Bacterial leader peptidase 1 (S26A) family signature 208 224 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
Lcy13g2022 398 PRINTS Bacterial leader peptidase 1 (S26A) family signature 338 357 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
Lcy13g2022 398 PRINTS Bacterial leader peptidase 1 (S26A) family signature 267 279 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
Lcy13g2022 398 CDD S26_SPase_I 211 370 IPR019533 GO:0004252(InterPro)|GO:0006465(InterPro)
Lcy13g2022 398 PANTHER SIGNAL PEPTIDASE I 1 382 IPR000223 GO:0004252(PANTHER)|GO:0005887(PANTHER)|GO:0006465(PANTHER)|GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0009535(PANTHER)|GO:0010027(PANTHER)|GO:0016020(InterPro)
Lcy13g2022 398 Pfam Signal peptidase, peptidase S26 192 376 IPR019533 GO:0004252(InterPro)|GO:0006465(InterPro)
Lcy13g2022 398 ProSitePatterns Signal peptidases I signature 3. 343 356 IPR019758 GO:0004252(InterPro)|GO:0016020(InterPro)
Lcy13g2022 398 FunFam Peptidase/ serine-type peptidase 282 375 - -
Lcy13g2022 398 ProSitePatterns Signal peptidases I serine active site. 217 224 IPR019756 GO:0004252(InterPro)|GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2022 K03100 - - csv:101222362 577.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2022 Lcy-Chr13:39212581 Lcy9g2144 Lcy-Chr9:46067989 4.52E-153 dispersed
Lcy13g2022 Lcy-Chr13:39212581 Lcy9g2141 Lcy-Chr9:46054537 2.88E-97 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g833 . . . . . . . . . Cmo12g00452 . Cma09g00203 . Car12g00481 Sed11g0987 Cpe06g00138 Cpe07g00455 Bhi04g00299 Tan02g1908 Cmetu03g1436 . Hepe10g0694 . Lcy13g2022 Cla08g01531 Cam08g2024 Cec08g1598 Cco08g1734 Clacu08g1712 . Cre08g1493 Cone4ag1550 Cone7ag1402 . . Lsi04g01599 Csa04g02369 . Cme03g01996 . . . Bda01g01456 . . . . Sed01g2628 . Cmo09g00197 Cma12g00511 . . Car09g00171 . . Bhi09g03385 Tan01g4845 Cmetu07g1797 . Hepe01g1727 . . Cla05g01999 Cam05g2150 Cec05g2167 Cco05g2215 Clacu05g2142 Cmu05g2012 Cre05g2138 Lsi08g01433 Csa02g02007 Chy07g00098 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003030 2 2 1 1 1 1 2 2 1 2 1 1 2 2 2 2 1 2 2 1 2 2 2 2 3 2 1 3 4 1 53