Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2023 ATGATTAAGTCAACGGATAAAGGAATCTGCGGATTATTACGTAATGAAAATGGGGAGAAAAAGGAAGCAAAGCGAGGAGGAAACAGAGCGGCTATCTTTGTTTATGTGACTGAAGGGCTGGAAAATATGGCATTCGTGTCGCTGGCGCTGAGCCTGGTGACGTATTTCAGTGGCGCAGGCGCATTTCCGGCAGCTGAGGCCGGCGCCGTGCAAAGGGGCGGCGGCAGGGAGCGAGTGCGAGGCGGCGAACGGCGGGCAGGAGGCGATTCTTTACGCGGGAATTTACCTGATAGCGCTGGGAACAAGTGGGGTGAAAGCGGCGCTGCCGGCGTTGGGGGCCGATCAGTTCGACGAGGGAGATCCGGCGGAGGGAGGGAAACTGTCGAGCTTTTTCAACTGGTTCTTGTTCAGCCTGACGATTGGGTCGATCGTGGGAGTGACGCTGATAGTGTGGATAAACACGGAGGAAAGTCGTTTTATCGCAATAACGTGCCTAAAGGAAGCCCCATTCTCAGAGTTTTGCAGGTCATTGTAGTTTCAATCCGAAATAGGAAACTTCAACTTCCAGATAATGTCGATGAACTACATGAGATTCGTGACAAAGAAGCTGCAATCCCATATGAAATCCTTGAGAAAACTGATCAATTTAGATTTTTTGACCGAGCAGCGATTATCAGAAATGATACAAATGCATCAATGTCAGCTGATCAGCAAGGACCATGGAGACTCTGCACAGTGACACAAGTTGAAGAAACAAAGATCCTAATCCGAATGCTCCCAATTATAGTCAGCACCATTTTCATGGGCACCTGCATGGCTCAACTCCAAACATTCTCCATTCAACAAAGCATAACCATGGATTCCGATTTCCTCGGGTTCAAAATTCCAGGCCCCTCCGTTCCCGTCATCCCCTTGCTTTTCATGTTCCTCTTGATCCCACTTTACGAGCGTGTTTTCGTTCCTCTAGCTCGTAAAATTACTGGAATTCCCACTGGAATTCGACACCTCCAAAGGATTGGCATTGGATTGATACTCACCGCTGCATCGATGGCCATTGCTGGGGTCGTGGAGACCCGACGCAAAAATGTTGCGATCGAACACGACATGGTGGATAGTGTGGAGCCTTTGCCGATGAGTGTGTTTTGGTTGGGATTCCAGTTCTGTGTATTTGGAATGGCTGATATGTTCACTCTTGTAGGACTGCTGGAATTCTTTTATGCAGAGAGCTCGGCAGGGATGAAGTCACTAAGCACGGCCATCGCTTGGTGTTCGATTGCATTCGGCTACTTCACAAGTACGGTGGTGGTGGAGGTGGTGAACAAGGCGAGCGGAGGGTGGCTGGCAAGCAACAATCTCAACAGAGACAATTTGAACTACTTCTACTGGTTACTGTCAGTGTTGAGTGTGCTGAACTTTGGGTTTTATTTGGTTTGTGCTTCTTGGTATAGATACAAGAATGTGGAGATCCTTCAGAAAGATGCTGAGGAAGAACAAGTGAACATAGCTAGGGGGGCATAG 1518 48.68 MIKSTDKGICGLLRNENGEKKEAKRGGNRAAIFVYVTEGLENMAFVSLALSLVTYFSGAGAFPAAEAGAVQRGGGRERVRGGERRAGGDSLRGNLPDSAGNKWGESGAAGVGGRSVRRGRSGGGRETVELFQLVLVQPDDWVDRGSDADSVDKHGGKSFYRNNVPKGSPILRVLQVIVVSIRNRKLQLPDNVDELHEIRDKEAAIPYEILEKTDQFRFFDRAAIIRNDTNASMSADQQGPWRLCTVTQVEETKILIRMLPIIVSTIFMGTCMAQLQTFSIQQSITMDSDFLGFKIPGPSVPVIPLLFMFLLIPLYERVFVPLARKITGIPTGIRHLQRIGIGLILTAASMAIAGVVETRRKNVAIEHDMVDSVEPLPMSVFWLGFQFCVFGMADMFTLVGLLEFFYAESSAGMKSLSTAIAWCSIAFGYFTSTVVVEVVNKASGGWLASNNLNRDNLNYFYWLLSVLSVLNFGFYLVCASWYRYKNVEILQKDAEEEQVNIARGA 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39216863 39221164 - Maker00033670 Lcy13g2023 652328

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2023 505 Pfam POT family 156 443 IPR000109 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Lcy13g2023 505 MobiDBLite consensus disorder prediction 67 123 - -
Lcy13g2023 505 SUPERFAMILY MFS general substrate transporter 257 487 IPR036259 -
Lcy13g2023 505 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 156 486 - GO:0016020(PANTHER)|GO:0022857(PANTHER)|GO:0055085(PANTHER)
Lcy13g2023 505 Gene3D MFS general substrate transporter like domains 154 491 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2023 K26548 - - csv:101219370 607.446
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2023 Lcy-Chr13:39216863 Lcy1g0243 Lcy-Chr1:2192826 8.00E-111 dispersed
Lcy13g2023 Lcy-Chr13:39216863 Lcy7g0250 Lcy-Chr7:2168898 1.82E-77 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g832 . . . . . . . . . Cmo12g00454 . . . Car12g00483 . . Cpe07g00456 Bhi04g00300 . . . . . Lcy13g2023 Cla08g01532 Cam08g2025 Cec08g1599 Cco08g1735 Clacu08g1713 . Cre08g1494 . . . Cone20ag0168 . . . Cme03g01997 . . . . . . . . . . . Cma12g00513 . . . . . . . . . . . . . . . . . . . Lsi08g01434 Csa02g02006 Chy03g01503 .