Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2026 ATGCCACTCTCTAAACTCTCAGCACTTTCCCTGGCCTATCGATCCTCAGCCTGCCGCCGGCAGCCGGCGGCCATCGCCATCTTCTCCGTTGTGAAATGTGCTTCTTCTTTTCACCCGCAGCCGCCGCCGACGGCATCCGTCGCACCTCGACATATGCATTCCTCGTCACGAGGCCGACGGTACACGGATCATGATAGGCTCGAAGCCGAGAGGTTTTTGAGTGATGAGCAGAGGGAAGCTTTGTACGGAGCGCAAATATCAACAGCAGCACAATCCGACGTCGCTTTGGCCATGACCAAGCGGCTTCTCCAAGACCAAGGCAAAGACTCCAACGCTGTGTTTTCGCCGTTGTCCATCCACGTTTTGCTCAGCCTTATTGCTGCTGGGTCCAGTGGGCCCACTCTGGATCAACTTCTGTGGTTCCTCAAATCCAACTCCATTGACCAAGTCAACCACTCTGCTTCTCAGATCGCATCCATCGTCTTGGCCGATGGCTCTCCCAGCGGCGGACCTCGCCTCTCATGCGCCAATGGAGTTTGGCTCGATCAGTCCCTTTCTCTCAAGCCTTCTTTCAAACACATTGTCCACACTGCTTACAAAGCCACTCTCCGTCAAGGCGATTTCCGGACTAAGGCTGATGAAGTGATTTCAGAAGTGAACTCCTGGGTTAAAAACCACACCAATGGACTCATCAACAGTATTCTTCCACCTAAATCCATTAATAGCATTACCAAGCTGATCCTCGCAAATGCACTATACTTCAAAGGGGATTGGCAAAATGAATTCAACCCTTCAAAAACGGAAGAACATGAGTTCTACCTTCTTGATGGGAGTTCAGTCGAGGTGCCTTTCATGACCAGTTGGAGGAGGCAGCTCGTAGCTGCCTATGATGGGTTTAAAGTTCTTGCAATGCCATACAAACAAGAATATGACGAACGTCATTTCTCCATGTACATATTTCTCCCAGATGCCAAAGATGGATTGCCATCTTTGATCGAAAGACTAGATTCGGAACCCGGGTTCATCGACCGCCACATTCCACAAGAAAAACTTGAAGTGGGTGAATTCAAGGTTCCAAAGTTCAAATTTTCTTTTGGGTTTGAAGCTTCCGATGTGTTGAAGAAGATGGGATTGGTGTTACCTTTCCAAGGAGGTTTGTTAGAAATGGTGGATTCACAAATGGATTCTGATCACCTGTTTGTTTCAAACATATTTCATCGGTCGTTCATTGAAGTGGATGAAAATGGCACGAAAGCTGTAGCTGTTTCGCGTGGCCGTCTAAGAGGACGAAGTTGTGGGTTGCCTCCTAATTTAGACATTATAAACTTCGTGGCGGACCACCCGTTCTTCTTCGTGATTAGAGAAGACGTGACGAGAACTTTGCCTTTTGTTGGGCAGCTGTTAAATCCTATTATTCAAACATAG 1425 48.07 MPLSKLSALSLAYRSSACRRQPAAIAIFSVVKCASSFHPQPPPTASVAPRHMHSSSRGRRYTDHDRLEAERFLSDEQREALYGAQISTAAQSDVALAMTKRLLQDQGKDSNAVFSPLSIHVLLSLIAAGSSGPTLDQLLWFLKSNSIDQVNHSASQIASIVLADGSPSGGPRLSCANGVWLDQSLSLKPSFKHIVHTAYKATLRQGDFRTKADEVISEVNSWVKNHTNGLINSILPPKSINSITKLILANALYFKGDWQNEFNPSKTEEHEFYLLDGSSVEVPFMTSWRRQLVAAYDGFKVLAMPYKQEYDERHFSMYIFLPDAKDGLPSLIERLDSEPGFIDRHIPQEKLEVGEFKVPKFKFSFGFEASDVLKKMGLVLPFQGGLLEMVDSQMDSDHLFVSNIFHRSFIEVDENGTKAVAVSRGRLRGRSCGLPPNLDIINFVADHPFFFVIREDVTRTLPFVGQLLNPIIQT 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39236623 39238210 + Maker00033630 Lcy13g2026 652331

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2026 474 ProSitePatterns Serpins signature. 443 453 IPR023795 -
Lcy13g2026 474 Gene3D Antithrombin, subunit I, domain 2 109 414 IPR042178 -
Lcy13g2026 474 SUPERFAMILY Serpins 83 470 IPR036186 -
Lcy13g2026 474 SMART serpin2 96 470 IPR023796 -
Lcy13g2026 474 CDD serpinP_plants 91 470 - -
Lcy13g2026 474 PANTHER SERINE PROTEASE INHIBITOR, SERPIN 90 470 IPR000215 GO:0004867(InterPro)|GO:0005615(PANTHER)|GO:0005615(InterPro)
Lcy13g2026 474 Gene3D - 258 465 IPR042185 -
Lcy13g2026 474 MobiDBLite consensus disorder prediction 39 61 - -
Lcy13g2026 474 Pfam Serpin (serine protease inhibitor) 90 470 IPR023796 -
Lcy13g2026 474 FunFam Predicted protein 109 288 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2026 K13963 - - csv:101219609 505.753
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2026 Lcy-Chr13:39236623 Lcy3g0862 Lcy-Chr3:31155482 9.27E-162 dispersed
Lcy13g2025 Lcy-Chr13:39232597 Lcy13g2026 Lcy-Chr13:39236623 7.45E-231 tandem
Lcy13g2026 Lcy-Chr13:39236623 Lcy13g2027 Lcy-Chr13:39239732 6.53E-178 tandem
Lcy13g2026 Lcy-Chr13:39236623 Lcy9g2139 Lcy-Chr9:46046007 1.36E-112 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g831 . . . . . . . . Cmo05g00215 . . . . . Sed08g1817 . . Bhi04g00301 Tan02g1904 Cmetu03g1500 . Hepe10g0696 . Lcy13g2026 Cla08g01534 Cam08g2027 Cec08g1603 Cco08g1738 Clacu08g1716 . Cre08g1499 . . Cone17ag1302 . . Csa04g02371 . Cme03g02000 Blo17g00830 . Bda08g01319 . . Bpe05g00068 . . . . . . Cma05g00209 . . Cpe11g00174 . . . . . . . . . . . . . . . Lsi08g01436 Csa02g02005 Chy07g00100 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000825 2 1 6 2 1 2 0 2 2 4 1 2 3 4 4 7 2 3 2 2 4 1 2 5 5 4 4 7 5 1 90