Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2029 ATGCCTTTCTTTTACAAAAGCGCTTCGAATTCTCGGATTCAACAGAAGGTTCCCGATTCTGAATTTTCCGTTGGTCTACCGGAACCGCTCGTTCAACGGCGGCTCACCCGACAGAGGAAGCTCCGGCATCTTACCGATCAAGACGTTGGCCTTCAAAACCTCCGATCTTTTCCCGATTCCCCCGATTTATCGGCTAAACCTAGATCGCCTCTTGGGGGTTCCGAACGTTGGTCCTCGGAGGCTTTGCCCCAGCCTCTGCCTCTGCCGGAGTACTTTCCGCTTCGAAATCCGGAGTTGGGTTCTTGGAGTTCCGGCCAAGGTCGCGTTGGATCGCCGATTGAAGCTCCGGTCCGGAAGAACTCTGATCATTCAACAACGAATGCAAATAGAAGTTTGGGCAACAATCAAAGGCGAGTTGCTATAGATTTTGCCTTGGAAGTTGCTAATGGCAATACAGGAGGGAATGGGGCTACCACATTTACAAGCCCTCAAAGTCTCTCTGTGAACTCAGGGAAATCGAATTCGAATAAGGAGTTTGTTTTTGCTTGTTTGGATCAGCCTCCAAACAACAAAGGCAGGGGATCTCCTACTCATCCGAGTGTTGAAAGGGGCAACTTCAATTTGACATCGAAGACTTCGTCGTCGAAGAGTGCGCCAACGAGCATTTTACCGAGTCCTGCCGTTAGCCCACGAAGATCATATACTGGAGATCTTTTTGTTTCTGGTTTGACTCGCCATGAACATCAGGAATCTCCTTCCAATAATTCTCCCAAAGTACCAACCCTTAAAACTGCACATAGTTCTCAGCCTTCTCCTCTCCATAGCCCAACAACTCGAAGTTCCGCAAGCAATTCCAGATCTCCTAATGATATGCCATTTCCTCTGCATCATAAGTTACAAAAGGATAGCAGTATAGATCGGTCTGAAAACCATGGTCATGTCAATGCCCATCCATTGCCCCTTCCTCCTCCATTAATAGCCTGTTCACAATCATCTCCACAATCTCATTCGTCGAATGTTCATCATGTTATTGAGAAACCATTCATTTCATCTATGAAATGTCAGTGGCAGAAAGGAAAGCTTATTGGGCGTGGTACGTTCGGAAGCGTTTATCTTGCAACCAACAGAGAGACTGGAGCTTTATGTGCAATGAAAGAAGTTGACCTCATTCCTGATGATCCTAAGAGTGCTGAAAGTATAAAGCAACTAGAGCAGGAAATTAAAGTTCTCAGTCAGCTTAAACATCCAAATATTGTACAGTATTATGGAAGTGAAATAATTGATGATCATTTCTATATATATTTGGAGTACGTTTTTCCGGGTTCAATAAATAAATATGTCCGTGAACATTGTGGAGCTATTACAGAATCCATCGTTCGCAATTTCACCCGCCATATTCTCTCTGGACTGGCTTACTTGCATAGCACAAAAACAATCCACAGGGATATCAAAGGTGCAAACTTGCTAGTTGACTCGTCAGGCGTTGTCAAACTTGCAGATTTTGGGATGGCAAAACATCTGACAGGGCAGTATGATCTTTCTTTGAAGGGTAGTCCGTACTGGATGGCTCCGGAGGTCATAAAGGCTGCTATGTTGAAAGATATCAACCCTGATCTTGCTTTGGCAGTTGACATTTGGAGTCTCGGTTGCACCATCATTGAAATGCTGAATGGAAAACCTCCATGGAGTGAGTATGAAGGGCATCAAGCTATGTTCAAAGTGTTGAACAAAACCCCACCAATCCCAGAAAAGCTATCTCCAGAAGGGAAAGACTTCCTCCAGTGTTGCTTCCAAAGGAATCCAGCTGACAGACCAACAGCCATGGTGCTGCTTGACCATCCTTTCTTAAGATTCTCAAATGACTCAAATGTTTCAATCCCCACATCAGCATTTTCAACAATGAACCTCTTGGAAAAATTGTTGAGTCCCAAGGACCACCTTCATCCCAAAGGAGACCAAGGGCAAAACTCTCCCGGAACTTCGGCTGCAAATGATTACCTGTCGTGCCGTAGCCCTTCAACGAACATTCCAAGCAATATTCCTGCCAGTGCCGTTAACAACCATCACTTTGCTCTTTCAAGGACCCATACAAGGGAAGTGCCGCACCTCTGA 2112 45.31 MPFFYKSASNSRIQQKVPDSEFSVGLPEPLVQRRLTRQRKLRHLTDQDVGLQNLRSFPDSPDLSAKPRSPLGGSERWSSEALPQPLPLPEYFPLRNPELGSWSSGQGRVGSPIEAPVRKNSDHSTTNANRSLGNNQRRVAIDFALEVANGNTGGNGATTFTSPQSLSVNSGKSNSNKEFVFACLDQPPNNKGRGSPTHPSVERGNFNLTSKTSSSKSAPTSILPSPAVSPRRSYTGDLFVSGLTRHEHQESPSNNSPKVPTLKTAHSSQPSPLHSPTTRSSASNSRSPNDMPFPLHHKLQKDSSIDRSENHGHVNAHPLPLPPPLIACSQSSPQSHSSNVHHVIEKPFISSMKCQWQKGKLIGRGTFGSVYLATNRETGALCAMKEVDLIPDDPKSAESIKQLEQEIKVLSQLKHPNIVQYYGSEIIDDHFYIYLEYVFPGSINKYVREHCGAITESIVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDSSGVVKLADFGMAKHLTGQYDLSLKGSPYWMAPEVIKAAMLKDINPDLALAVDIWSLGCTIIEMLNGKPPWSEYEGHQAMFKVLNKTPPIPEKLSPEGKDFLQCCFQRNPADRPTAMVLLDHPFLRFSNDSNVSIPTSAFSTMNLLEKLLSPKDHLHPKGDQGQNSPGTSAANDYLSCRSPSTNIPSNIPASAVNNHHFALSRTHTREVPHL 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39281776 39288103 + Maker00025435 Lcy13g2029 652334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2029 703 MobiDBLite consensus disorder prediction 153 180 - -
Lcy13g2029 703 MobiDBLite consensus disorder prediction 118 135 - -
Lcy13g2029 703 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 33 620 IPR050538 -
Lcy13g2029 703 MobiDBLite consensus disorder prediction 644 670 - -
Lcy13g2029 703 Gene3D Transferase(Phosphotransferase) domain 1 353 645 - -
Lcy13g2029 703 ProSitePatterns Protein kinases ATP-binding region signature. 362 385 IPR017441 GO:0005524(InterPro)
Lcy13g2029 703 MobiDBLite consensus disorder prediction 52 82 - -
Lcy13g2029 703 MobiDBLite consensus disorder prediction 653 670 - -
Lcy13g2029 703 MobiDBLite consensus disorder prediction 102 135 - -
Lcy13g2029 703 Pfam Protein kinase domain 357 616 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g2029 703 MobiDBLite consensus disorder prediction 153 337 - -
Lcy13g2029 703 ProSiteProfiles Protein kinase domain profile. 356 616 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g2029 703 MobiDBLite consensus disorder prediction 295 313 - -
Lcy13g2029 703 MobiDBLite consensus disorder prediction 246 290 - -
Lcy13g2029 703 SUPERFAMILY Protein kinase-like (PK-like) 354 628 IPR011009 -
Lcy13g2029 703 MobiDBLite consensus disorder prediction 190 228 - -
Lcy13g2029 703 SMART serkin_6 356 616 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g2029 703 FunFam Mitogen-activated protein kinase kinase kinase 5 353 653 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1182 Lcy-Chr10:34420572 Lcy13g2029 Lcy-Chr13:39281776 2.16E-70 dispersed
Lcy13g2029 Lcy-Chr13:39281776 Lcy1g1154 Lcy-Chr1:10810632 4.92E-88 dispersed
Lcy13g2029 Lcy-Chr13:39281776 Lcy1g1008 Lcy-Chr1:8999405 1.68E-157 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65588 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2029 - - - 0.0