Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2033 ATGTCCCATGCTTTACGTAACTATTACATGCAGATTTCTTCCATTAAAGTCATTCGTAATAAGCAAACTGGTATATCAGAAGGCTATGGATTTGTAGAATTTTTCTCTCATACAACAGCAGAGAAAGTTCTGCAGAACTATTCTACAATTTTGATGCCTAATACTGAGCAAACTTTCCGGCTAAACTGGGCAACATTTAGCACTGGTGACAAGCGTTCAGAAAATGGTTCTGATCTTTCTATTTTTGTAGGAGATTTAGCAGCAGATGTTACTGATAGTATACTGCATGAAACTTTTGCTAGTAAATACTCATCTGTCAAAGCAGCTAAAGTTGTCTATGATCCAAATACTGGTTGTTCAAAAGGTTATGGTTTTGTGAGGTTTGGTGATGATAATGAGAGGTCTCAGGCCATGACTGAAATGAATGGCGTGTATTGCTCAAGTAGGCCTATGCGTATTGGTGCAGCGACACCCAAAAAATCCTCTGGATATCAGCAGCAATATTCTTCACAAGGATATGCATCAAATGGTTCATTCACCCATGGACACCAGTCTGATGGAGATTCTACAAATACAACAAATGCTGAAGAGGCATTGCAGAAATTAAATGGAACTGTGATTGGCAAGCAAACAGTACGTCTTTCTTGGGGACGAAGTCCGGCAATTAAGCAGTACCGGGCTGATTATAACAATCACTGGAGTGGAGCCTACTATGGAGGGCAGGTCTATGGTGGATATGGATATGCACTGCCGCTACCTTACGACCCACCAACCATGTATGCTACAGCAGCATATGGAGCTTACCCTATGTATGGCACCCATCAACAGCAAGTGAACTGA 840 41.31 MSHALRNYYMQISSIKVIRNKQTGISEGYGFVEFFSHTTAEKVLQNYSTILMPNTEQTFRLNWATFSTGDKRSENGSDLSIFVGDLAADVTDSILHETFASKYSSVKAAKVVYDPNTGCSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPKKSSGYQQQYSSQGYASNGSFTHGHQSDGDSTNTTNAEEALQKLNGTVIGKQTVRLSWGRSPAIKQYRADYNNHWSGAYYGGQVYGGYGYALPLPYDPPTMYATAAYGAYPMYGTHQQQVN 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39331122 39335575 - Maker00025331 Lcy13g2033 652338

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2033 279 CDD RRM2_SECp43_like 78 157 - -
Lcy13g2033 279 FunFam Polyadenylate-binding protein RBP47B 67 169 - -
Lcy13g2033 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 66 IPR000504 GO:0003723(InterPro)
Lcy13g2033 279 Gene3D - 2 65 IPR012677 -
Lcy13g2033 279 SUPERFAMILY RNA-binding domain, RBD 63 183 IPR035979 GO:0003676(InterPro)
Lcy13g2033 279 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 10 223 IPR050825 GO:0003729(InterPro)|GO:0003729(PANTHER)|GO:0005829(PANTHER)
Lcy13g2033 279 SUPERFAMILY RNA-binding domain, RBD 193 247 IPR035979 GO:0003676(InterPro)
Lcy13g2033 279 Pfam RNA recognition motif 11 55 IPR000504 GO:0003723(InterPro)
Lcy13g2033 279 Pfam RNA recognition motif 81 150 IPR000504 GO:0003723(InterPro)
Lcy13g2033 279 Gene3D - 68 192 IPR012677 -
Lcy13g2033 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 158 IPR000504 GO:0003723(InterPro)
Lcy13g2033 279 SMART rrm1_1 80 154 IPR000504 GO:0003723(InterPro)
Lcy13g2033 279 SUPERFAMILY RNA-binding domain, RBD 11 68 IPR035979 GO:0003676(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2033 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1831 Lcy-Chr12:39421377 Lcy13g2033 Lcy-Chr13:39331122 3.90E-92 dispersed
Lcy13g2033 Lcy-Chr13:39331122 Lcy8g1046 Lcy-Chr8:36150793 5.00E-80 dispersed
Lcy8g1047 Lcy-Chr8:36163383 Lcy13g2033 Lcy-Chr13:39331122 1.73E-18 transposed
Lcy13g2033 Lcy-Chr13:39331122 Lcy9g2128 Lcy-Chr9:45926677 1.11E-119 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g813 Blo01g01536 . Bda01g00562 . . . Bma04g00177 Bma01g02286 . Cmo12g00459 Cma01g01860 Cma09g00213 Car01g01448 . Sed01g0343 Cpe06g00147 Cpe07g00462 Bhi04g00313 Tan02g1894 Cmetu05g1832 . Hepe10g0703 . Lcy13g2033 . . . . . . . Cone4ag1559 Cone7ag1392 . . Lsi04g01583 Csa04g02386 . Cme03g02008 . . . . . . . . Sed01g2645 Cmo01g01919 Cmo09g00205 Cma12g00518 . . Car09g00180 . Cpe02g00165 Bhi09g03353 Tan01g4821 Cmetu11g2597 . Hepe01g1741 Mch11g0266 . Cla05g02019 Cam05g2169 Cec05g2185 Cco05g2233 Clacu05g2162 Cmu05g2030 Cre05g2158 Lsi08g01446 Csa02g01994 Chy07g00112 Cme04g00689
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000461 5 3 1 4 1 5 5 5 5 4 4 4 5 3 3 4 5 5 5 5 3 3 3 3 3 4 3 6 6 2 117