Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy13g2045 | ATGGGAGTCGCTAATCTTTCGTACGAGGAATGTCGTCGCAAGAGAGTCGAAGAAAACAAGAAGAGAATGGAAGCCCTAAATCTGCCCCTGCTTTCTCAAGCTCTTCTCGATTCTTCTCCTTCCAAATCCTCCCCTAGTAAGCAGGCAAAGCCTCGCGTGACGCAGAAAGAACTGGTGGTGGTGAGGAGGTCCAGTCGCGTAGCAAAACAACCAGCCCCTGTTTACGCTGAAGTTCTTGTCGATCGCGTGGCGAATCCTAGAAGGATCTCCAGAGCAAGAGATTTTTCAGACCAGTTTTATGCTTCGGATGAAGCAAGAAAAAATGCCTTTGAAAGAGCTGAGCAACTACAATCTGGGTTGGAGCCGAATTATCCTAACTGTGTAAAGTCAATGGTTCGATCTCATGTTAGTGGTTGTTTCTGGCTGGGTCTTCCTGCTCATTTCTGCAAGACGTACCTTCCAAATAATGATGGAGCAATGACTTTAATAGATGAAGATGGCGATGAGTATCCAATAATATATTTGGCACGAAAAACAGGATTTAGTGGGGGATGGAAGGGTTTTTCGATTGCTCATAAATTGGCAGATGGGGATGCTGTGGTTTTTCAACTCATTAAACCTACAACCTGCAAGGTGTACATTTTTAGGGCGGATGGTTCCAAAGAAGATAGTGCTTCTAGCAGTAGCTAA | 690 | 44.93 | MGVANLSYEECRRKRVEENKKRMEALNLPLLSQALLDSSPSKSSPSKQAKPRVTQKELVVVRRSSRVAKQPAPVYAEVLVDRVANPRRISRARDFSDQFYASDEARKNAFERAEQLQSGLEPNYPNCVKSMVRSHVSGCFWLGLPAHFCKTYLPNNDGAMTLIDEDGDEYPIIYLARKTGFSGGWKGFSIAHKLADGDAVVFQLIKPTTCKVYIFRADGSKEDSASSSS | 229 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 39407698 | 39410982 | + | Maker00025434 | Lcy13g2045 | 652350 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy13g2045 | 229 | ProSiteProfiles | B3 DNA-binding domain profile. | 127 | 218 | IPR003340 | GO:0003677(InterPro) | |
Lcy13g2045 | 229 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED | 12 | 219 | IPR044837 | - | |
Lcy13g2045 | 229 | MobiDBLite | consensus disorder prediction | 36 | 51 | - | - | |
Lcy13g2045 | 229 | Pfam | B3 DNA binding domain | 128 | 217 | IPR003340 | GO:0003677(InterPro) | |
Lcy13g2045 | 229 | SUPERFAMILY | DNA-binding pseudobarrel domain | 121 | 219 | IPR015300 | - | |
Lcy13g2045 | 229 | CDD | B3_DNA | 125 | 216 | IPR003340 | GO:0003677(InterPro) | |
Lcy13g2045 | 229 | Gene3D | - | 101 | 219 | IPR015300 | - | |
Lcy13g2045 | 229 | SMART | B3_2 | 127 | 218 | IPR003340 | GO:0003677(InterPro) | |
Lcy13g2045 | 229 | MobiDBLite | consensus disorder prediction | 36 | 55 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy13g2045 | Lcy-Chr13:39407698 | Lcy3g1113 | Lcy-Chr3:36066553 | 8.70E-72 | dispersed | |
Lcy13g2045 | Lcy-Chr13:39407698 | Lcy13g2046 | Lcy-Chr13:39412668 | 9.56E-97 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19438 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy13g2045 | - | - | - | 0.0 |