Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2045 ATGGGAGTCGCTAATCTTTCGTACGAGGAATGTCGTCGCAAGAGAGTCGAAGAAAACAAGAAGAGAATGGAAGCCCTAAATCTGCCCCTGCTTTCTCAAGCTCTTCTCGATTCTTCTCCTTCCAAATCCTCCCCTAGTAAGCAGGCAAAGCCTCGCGTGACGCAGAAAGAACTGGTGGTGGTGAGGAGGTCCAGTCGCGTAGCAAAACAACCAGCCCCTGTTTACGCTGAAGTTCTTGTCGATCGCGTGGCGAATCCTAGAAGGATCTCCAGAGCAAGAGATTTTTCAGACCAGTTTTATGCTTCGGATGAAGCAAGAAAAAATGCCTTTGAAAGAGCTGAGCAACTACAATCTGGGTTGGAGCCGAATTATCCTAACTGTGTAAAGTCAATGGTTCGATCTCATGTTAGTGGTTGTTTCTGGCTGGGTCTTCCTGCTCATTTCTGCAAGACGTACCTTCCAAATAATGATGGAGCAATGACTTTAATAGATGAAGATGGCGATGAGTATCCAATAATATATTTGGCACGAAAAACAGGATTTAGTGGGGGATGGAAGGGTTTTTCGATTGCTCATAAATTGGCAGATGGGGATGCTGTGGTTTTTCAACTCATTAAACCTACAACCTGCAAGGTGTACATTTTTAGGGCGGATGGTTCCAAAGAAGATAGTGCTTCTAGCAGTAGCTAA 690 44.93 MGVANLSYEECRRKRVEENKKRMEALNLPLLSQALLDSSPSKSSPSKQAKPRVTQKELVVVRRSSRVAKQPAPVYAEVLVDRVANPRRISRARDFSDQFYASDEARKNAFERAEQLQSGLEPNYPNCVKSMVRSHVSGCFWLGLPAHFCKTYLPNNDGAMTLIDEDGDEYPIIYLARKTGFSGGWKGFSIAHKLADGDAVVFQLIKPTTCKVYIFRADGSKEDSASSSS 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39407698 39410982 + Maker00025434 Lcy13g2045 652350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2045 229 ProSiteProfiles B3 DNA-binding domain profile. 127 218 IPR003340 GO:0003677(InterPro)
Lcy13g2045 229 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 12 219 IPR044837 -
Lcy13g2045 229 MobiDBLite consensus disorder prediction 36 51 - -
Lcy13g2045 229 Pfam B3 DNA binding domain 128 217 IPR003340 GO:0003677(InterPro)
Lcy13g2045 229 SUPERFAMILY DNA-binding pseudobarrel domain 121 219 IPR015300 -
Lcy13g2045 229 CDD B3_DNA 125 216 IPR003340 GO:0003677(InterPro)
Lcy13g2045 229 Gene3D - 101 219 IPR015300 -
Lcy13g2045 229 SMART B3_2 127 218 IPR003340 GO:0003677(InterPro)
Lcy13g2045 229 MobiDBLite consensus disorder prediction 36 55 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2045 Lcy-Chr13:39407698 Lcy3g1113 Lcy-Chr3:36066553 8.70E-72 dispersed
Lcy13g2045 Lcy-Chr13:39407698 Lcy13g2046 Lcy-Chr13:39412668 9.56E-97 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19438 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2045 - - - 0.0