Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy13g2046 | ATGACCAATTCACAGAGCAAACTGTCCAGGCCTCGCGTGACGCAGAAACAACTGGTGGTGGTGAGGCGGTCCAGTCGCGTAGCGAAACAATCAGCCCCTGTTTACGTCGAAGTTGTTGTCAATCGCGTGGTGATTCCTAGAAGGATCTCCAAAGCAAGAGATTTTTCAAACCGGGTTTATGCTTCGGATGTAGCAAGAAAAAATGCCTTTGAAAGAGCTGAGCAACTACAATCTGGGTTGGAGCCGAATTATCCCAACTTTATAAAGTCAATGCTTCAATCTCATGTTAGTGGTGGATTCTGGCTGGGCCTTCCTTCTCATTTCTGCAAGACGCACCTTCCAAATCGTGATGGAGTAATGACTTTAGTAGATGAAGATGGCGATGAATATCCAACAGTATATTTAGCACGAAAAACAGGACTTAGTGGTGGATGGAAGGGTTTTTCAGTTGCTCATAAATTGGCAGATGGGGATGCCGTGATTTTTCAATTCATTAAACCTACAATCTGCAAGGTGATTCCCCTTCATCTCTTTACTGGATTCACAATCCTTGAACTTTGTCTTGCTTGGTCTGTTTAG | 579 | 44.04 | MTNSQSKLSRPRVTQKQLVVVRRSSRVAKQSAPVYVEVVVNRVVIPRRISKARDFSNRVYASDVARKNAFERAEQLQSGLEPNYPNFIKSMLQSHVSGGFWLGLPSHFCKTHLPNRDGVMTLVDEDGDEYPTVYLARKTGLSGGWKGFSVAHKLADGDAVIFQFIKPTICKVIPLHLFTGFTILELCLAWSV | 192 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 39412668 | 39413655 | + | Maker00025207 | Lcy13g2046 | 652351 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy13g2046 | 192 | Gene3D | - | 62 | 179 | IPR015300 | - | |
Lcy13g2046 | 192 | CDD | B3_DNA | 85 | 168 | IPR003340 | GO:0003677(InterPro) | |
Lcy13g2046 | 192 | Pfam | B3 DNA binding domain | 87 | 166 | IPR003340 | GO:0003677(InterPro) | |
Lcy13g2046 | 192 | ProSiteProfiles | B3 DNA-binding domain profile. | 87 | 181 | IPR003340 | GO:0003677(InterPro) | |
Lcy13g2046 | 192 | SUPERFAMILY | DNA-binding pseudobarrel domain | 81 | 173 | IPR015300 | - | |
Lcy13g2046 | 192 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED | 49 | 172 | IPR044837 | - | |
Lcy13g2046 | 192 | SMART | B3_2 | 87 | 173 | IPR003340 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy13g2046 | Lcy-Chr13:39412668 | Lcy3g1113 | Lcy-Chr3:36066553 | 8.40E-56 | dispersed | |
Lcy13g2045 | Lcy-Chr13:39407698 | Lcy13g2046 | Lcy-Chr13:39412668 | 9.56E-97 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19439 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy13g2046 | - | - | - | 0.0 |