Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2046 ATGACCAATTCACAGAGCAAACTGTCCAGGCCTCGCGTGACGCAGAAACAACTGGTGGTGGTGAGGCGGTCCAGTCGCGTAGCGAAACAATCAGCCCCTGTTTACGTCGAAGTTGTTGTCAATCGCGTGGTGATTCCTAGAAGGATCTCCAAAGCAAGAGATTTTTCAAACCGGGTTTATGCTTCGGATGTAGCAAGAAAAAATGCCTTTGAAAGAGCTGAGCAACTACAATCTGGGTTGGAGCCGAATTATCCCAACTTTATAAAGTCAATGCTTCAATCTCATGTTAGTGGTGGATTCTGGCTGGGCCTTCCTTCTCATTTCTGCAAGACGCACCTTCCAAATCGTGATGGAGTAATGACTTTAGTAGATGAAGATGGCGATGAATATCCAACAGTATATTTAGCACGAAAAACAGGACTTAGTGGTGGATGGAAGGGTTTTTCAGTTGCTCATAAATTGGCAGATGGGGATGCCGTGATTTTTCAATTCATTAAACCTACAATCTGCAAGGTGATTCCCCTTCATCTCTTTACTGGATTCACAATCCTTGAACTTTGTCTTGCTTGGTCTGTTTAG 579 44.04 MTNSQSKLSRPRVTQKQLVVVRRSSRVAKQSAPVYVEVVVNRVVIPRRISKARDFSNRVYASDVARKNAFERAEQLQSGLEPNYPNFIKSMLQSHVSGGFWLGLPSHFCKTHLPNRDGVMTLVDEDGDEYPTVYLARKTGLSGGWKGFSVAHKLADGDAVIFQFIKPTICKVIPLHLFTGFTILELCLAWSV 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39412668 39413655 + Maker00025207 Lcy13g2046 652351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2046 192 Gene3D - 62 179 IPR015300 -
Lcy13g2046 192 CDD B3_DNA 85 168 IPR003340 GO:0003677(InterPro)
Lcy13g2046 192 Pfam B3 DNA binding domain 87 166 IPR003340 GO:0003677(InterPro)
Lcy13g2046 192 ProSiteProfiles B3 DNA-binding domain profile. 87 181 IPR003340 GO:0003677(InterPro)
Lcy13g2046 192 SUPERFAMILY DNA-binding pseudobarrel domain 81 173 IPR015300 -
Lcy13g2046 192 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 49 172 IPR044837 -
Lcy13g2046 192 SMART B3_2 87 173 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2046 Lcy-Chr13:39412668 Lcy3g1113 Lcy-Chr3:36066553 8.40E-56 dispersed
Lcy13g2045 Lcy-Chr13:39407698 Lcy13g2046 Lcy-Chr13:39412668 9.56E-97 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19439 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2046 - - - 0.0