Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2069 ATGGGGGATGTAGTTGTAACGTTCAAAGATGGCAATTCAACTCAACATGTAACTCCAACCGAGACACAGGATTTAGAAATGACAGGATCTGAAAGTGAAGCTCCCACCGTCATTATTTGTAATGCACAGATAGATTTTGAAGGTGGAGGTCCAACAGGTCCTGTTGCTAATGGAGTTATATATACTGCTCCTGTTGCAAATGGAGTAATATATTCTGAAAGTCCTAAATTCTTTGATACCAGCGATCCACCTTCTGAAATTTCTGAAGTTATTGGAAAGGACAATAACGTTGCAATGGAAGTTCATTCTCCCACAAATCTCAAGCAAGGTGGTCTAAATAGAGGCTTTATTGAAACCAAGGCACCTATTGAATCTGTAAAAGCAGCTGTCTCTAAATTTGGAGGGATTGTTGATTGGAAAGCTCGTCGAGTCCATTCTATGGTGGAGAGAAGTAAGACAGTGGAGGAAAAACTTGATGAAGTGCAGGAGGAGATGCTTCATTGTAGGAAAAGGTCAGAGGAAGCTGTGGAGGCCGAATTCCATGTGTTGAATGAGCTTGAAAGCACTAAACGACGCATAGAAGAATTGCAGCTTGCACTAGAGATTGCACAAACGGAAGAGCAACAGGCAAAACAAGATTCAGAACTTGCTAAGCGTAGACTGGAGGAGATGGAGCAAGGAACCATTGAGGAGGATGATGATGCTCTAGCCAAGGCACAGCTTGAGATGGCCACGGCCGCGCATGCTGCTGCAGTTTCAGAACTGAAATCCATTAAAGAAGAATTGGAAGTACTTCGTGACGAATTTACTTCGTTAGTGTCCGAGAGAGATTCTGCTGTGAAAAACGCTGATAATGCTCTTGCTGGTTCTAAGGAAGCTGAGAAGGCACTACAGGAGCTGACCACAGAGCTGGTTTCTTTAAGGGAATCATTGGAGTCTGCAAAAGCTGCTCATTTAGAAGCAGAAGAGCAAAGGATGTTTGCCGCCTTGGCCAAAGGGCAAGATTGTTCCAAATGGAAGAAGGAACTAGATGATGCAGAAGATGAGTTTTGTAGACTAAACTTGCAAATTCTGTCAATTGAAGATCTTAAATTGAAAGTTAATACTGCCTCAAGTTTGTTAACGGATTTGAAAGCTGAAATGATGGCTTATATGGAATCAGTAATGAGGGAGGAGATAAGTGATGAACAGCTCTTGAAAGGTGAAGTTGCCGAAACTGAAAATAAAACAGATACAACTACACAATCAGCGGTTCATTCAACAAAGAGGGAATTGGAAGAAGTAAAGCTCAACATAGAGAAAGCAATTGCTGAAGTAGAATGCTTGAAGATGGCTGCTACTTCACTAAAATCAGAGCTTGAAGGGGAGAAATCTACTATGGCCACCACTAAGAAGAGAGAAGGCAGGCATTCCGACATAGCTGCCTCACTTGAAGCTGAATTAGATAAGAACATGTCTGAAATCGTTGTTGGTCAGGGAAACGTAAAAGCAGCTCAAGGAAACAGTGTAGACCTGACCAATCAATTGAAGCAGGCAGCAGAGGAGGCTGATCAGGCGAAGTCACTTGCTCAGATGGCTCGTGAAGAGTTGCAGAAGGCAAAGATAGAAGCAGAGCAAGCAAAGGCGGAAGCAATAGCAATGGAAAGTAGAATACTTGCAGCTCAGAAGGAGATTGAGGCTTCCAATGCTTCAAAAATGCTAGCATTATCAGCAATCAAAGCACTACAAGAGAGTGATTCCTCCAAAACCGCGGAAGAAGATTCACCAACGACAGTAACTATTTCACTAGAGGAATACAATGAACTCAGTGAACGTGCCCGCGAGGCCGAGGAGCAGGCCAGCGTCAAGGTGACAGAAGCAATTTCACAAATTGATGTCGCTAAGGAATCCGAGGCAAAAAGTCAAGAAATGCTGGAAGAAGTTAGTCGCGAACTCGTTGTGAGACAGGAAGCACTGAAAGCTGCAACGGAAAAGGCGAGTGAGGCCGAGGAAGGAAAGTTAGCAGTAGAACAAGAGTTGAGAATATGGAGAGAAGAACAAGAGCAACAAAGGAAGGAGGACATTAAATCTGACCAAGAAGTAACAATTCCTACAACAAGCCCAAGAACAAGCACTGAGGTGAAAGAATCAACAACTAGTGAACAAGCAGATTCTCCTGCTCCCCAAGAGCCAGTCGCAAAGGAAGAGACGGCAAAAGGCCTTGGTAGAACTGAATCGTTGTCAGAAACCAAGGATGGAAAGAAAAAGAAGAAGTCGTTCTTCCCAAAAATGCTAACATTGTTAGGCAAACAAAAGTCAAGTCGACATAAAGCTACATAA 2319 43.17 MGDVVVTFKDGNSTQHVTPTETQDLEMTGSESEAPTVIICNAQIDFEGGGPTGPVANGVIYTAPVANGVIYSESPKFFDTSDPPSEISEVIGKDNNVAMEVHSPTNLKQGGLNRGFIETKAPIESVKAAVSKFGGIVDWKARRVHSMVERSKTVEEKLDEVQEEMLHCRKRSEEAVEAEFHVLNELESTKRRIEELQLALEIAQTEEQQAKQDSELAKRRLEEMEQGTIEEDDDALAKAQLEMATAAHAAAVSELKSIKEELEVLRDEFTSLVSERDSAVKNADNALAGSKEAEKALQELTTELVSLRESLESAKAAHLEAEEQRMFAALAKGQDCSKWKKELDDAEDEFCRLNLQILSIEDLKLKVNTASSLLTDLKAEMMAYMESVMREEISDEQLLKGEVAETENKTDTTTQSAVHSTKRELEEVKLNIEKAIAEVECLKMAATSLKSELEGEKSTMATTKKREGRHSDIAASLEAELDKNMSEIVVGQGNVKAAQGNSVDLTNQLKQAAEEADQAKSLAQMAREELQKAKIEAEQAKAEAIAMESRILAAQKEIEASNASKMLALSAIKALQESDSSKTAEEDSPTTVTISLEEYNELSERAREAEEQASVKVTEAISQIDVAKESEAKSQEMLEEVSRELVVRQEALKAATEKASEAEEGKLAVEQELRIWREEQEQQRKEDIKSDQEVTIPTTSPRTSTEVKESTTSEQADSPAPQEPVAKEETAKGLGRTESLSETKDGKKKKKSFFPKMLTLLGKQKSSRHKAT 772
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39617120 39620979 + Maker00025400 Lcy13g2069 652374

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2069 772 MobiDBLite consensus disorder prediction 729 749 - -
Lcy13g2069 772 Coils Coil 360 380 - -
Lcy13g2069 772 Coils Coil 638 686 - -
Lcy13g2069 772 Coils Coil 418 452 - -
Lcy13g2069 772 Coils Coil 592 619 - -
Lcy13g2069 772 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 117 707 - GO:0005829(PANTHER)|GO:0009903(PANTHER)|GO:0009904(PANTHER)
Lcy13g2069 772 MobiDBLite consensus disorder prediction 679 772 - -
Lcy13g2069 772 Coils Coil 283 324 - -
Lcy13g2069 772 Coils Coil 144 171 - -
Lcy13g2069 772 Coils Coil 495 557 - -
Lcy13g2069 772 MobiDBLite consensus disorder prediction 693 719 - -
Lcy13g2069 772 MobiDBLite consensus disorder prediction 9 30 - -
Lcy13g2069 772 Coils Coil 248 275 - -
Lcy13g2069 772 Coils Coil 183 227 - -
Lcy13g2069 772 Pfam Weak chloroplast movement under blue light 114 683 IPR008545 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2069 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2069 Lcy-Chr13:39617120 Lcy9g2114 Lcy-Chr9:45806463 9.38E-77 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g771 Blo01g01532 Blo12g00955 . Bda03g00215 Bpe02g00424 . Bma04g00166 Bma01g02280 Cmo05g00186 Cmo12g00494 Cma01g01843 Cma09g00225 Car01g01437 Car12g00505 . Cpe06g00157 Cpe07g00482 Bhi04g00346 . . . Hepe08g1277 . Lcy13g2069 Cla08g01568 Cam08g2065 . Cco08g1776 Clacu08g1751 . Cre08g1537 Cone4ag1570 Cone7ag1382 . Cone20ag0189 Lsi04g01567 Csa04g02403 . Cme03g02043 Blo17g00856 . Bda08g01354 Bda01g01611 . Bpe05g00049 Bma01g00652 Bma05g00073 . Cmo01g01902 Cmo09g00217 Cma12g00549 Cma05g00187 Car05g00157 Car09g00193 Cpe11g00153 Cpe02g00177 Bhi09g03333 Tan01g4801 . . . . . Cla05g02035 Cam05g2185 Cec05g2201 Cco05g2247 Clacu05g2177 Cmu05g2044 Cre05g2172 Lsi08g01470 Csa02g01963 Chy07g00127 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009338 0 3 0 0 0 1 3 1 0 1 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 0 6 2 0 33