Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2071 ATGGCGGTTTCACTTTCAGCGGCCACTGCCAGAGCCTTCCTTCCGCAACCCTCTTCTTCATCTCCCTCCTCCATTCCCGCGCCCTTTTACACTCCCTCATTCAACCCTAAACCCTCCCGCCGCTCAATAATAGCTCAAGCCCAATCTCAGCCTCGCCAAACATGGCTCCCCGGCCTCGACCCTCCCCTGCATCTCGACGGAAGCCTCGCCGGCGATTTTGGATTCGACCCACTTGGCCTCGGCGAAGACCCAGATAGTTTGAAGTGGTACGTCCAAGCAGAGCTCGTTCATTCTCGCTTCGCCATGCTCGGCGTCTCTGGAATTCTTCTCACAGATTTGCTTCGAGTGACAGGAATCAGTAAATTGCCTGTTTGGTACAATGCGGGTGCTGTGGAATATGGCTTTGCCAACAAAGAAACCCTCTTCATTGTTCAGCTGCTGTTGATGGGCTTTGTGGAAACCAAAAGATATATGGATTTCAAGAGCCCTGGATCTCAAGCACAAGAAGGAACTTTCTTTGGATTAGAATCCGCTCTCAGGGGTCTCGAGCCCGGATATCCTGGGGGTCCTCTGCTGAATCCTCTTGGCCTGGCTAAAGATATCAAGAATGCACATGACTGGAAGCTCAAAGAGATTAAGAATGGACGGCTGGCGATGGTAGCCATGCTTGGGATCTTTGTGCAAGCTTATGTTACTCATACAGGGCCAATAGATAACCTTGTGGAGCACCTTTCTAATCCATGGCACAAGACTATTATCCAGACCCTCTCGAGCTCAAGTCCTTGA 786 51.15 MAVSLSAATARAFLPQPSSSSPSSIPAPFYTPSFNPKPSRRSIIAQAQSQPRQTWLPGLDPPLHLDGSLAGDFGFDPLGLGEDPDSLKWYVQAELVHSRFAMLGVSGILLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLESALRGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSSSSP 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39623077 39625726 - Maker00025249 Lcy13g2071 652376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2071 261 Gene3D Chlorophyll a/b binding protein domain 52 260 - -
Lcy13g2071 261 FunFam Chlorophyll a-b binding protein, chloroplastic 53 260 - -
Lcy13g2071 261 Pfam Chlorophyll A-B binding protein 62 229 IPR022796 -
Lcy13g2071 261 SUPERFAMILY Chlorophyll a-b binding protein 49 258 - -
Lcy13g2071 261 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 9 252 IPR001344 GO:0009416(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2071 Lcy-Chr13:39623077 Lcy2g0568 Lcy-Chr2:4882718 6.23E-68 dispersed
Lcy13g2071 Lcy-Chr13:39623077 Lcy5g2537 Lcy-Chr5:48148995 2.64E-69 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2071 K08911 - csv:101219846 411.764