Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2072 ATGATGCCTCAAAATTTTCTACTCATTTCCATTTTTCCTCTAGCCCTCCTCCTTCTTCTACCTCTAATTTTCTTTCATGTCCAAAAGAACAAGAATATTGCAAAGAAGCTCCCTCCTGGCTCAATGGGCTGGCCCTTAATCGGCGAGACCTTTCGTCTCTACTCTCAACATCCATCCTCCTTCTTCCTTGGAAAACAAAAAAGGTATGGGGATATATTCAAGACCCACATTCTTGGGTGTCCGTGTGTGATGTTGGCGACTCCCGAGGCGGCTCGGTTCGTGCTAGTGACGCAGGCTCATCTCTTCAAACCCACATACCCACAAAGCAAAGAGCGTCTAATCGGACCATCGGCTCTGTTTTTCCACCAAAGCGAAACCCATTTGCGGCTGCGTAAGCTAATCCAAAGCTCCCTCTCACCGGACCCTGTCCGAGCCCTGGTCCCCGACATCCACGCCCTCGCCGTCTCTACATTGCCGGCATGGCTCAATGGCCATCTCATCAACACTTTCCATCAAATGAAGAAGTTCTCTTTTGAAGTCGGAATTTTGGCGATTTTTGGGCATGTGGAGGAGGCCAATTACAGAGGCGAATTACTGAGAAACTATTCCATAGTGAACAAAGGCTACAATTCTTTTCCAACCAACATTCCCGGAACGCTTTACAAAAAAGCACTTAAAGCGAGAAAGAGGCTGGGAGAGATCATAAGCAGTATAATCTCAGAGAAGAGAAAGGAATTGGTGGAGAAGAATTTGTTGGGTTGTTTGCTAAAATGGAGAGATGAAAATGGAGAAAGTCTAAGTGATGAACAGATTGCTGATAATATAATTGGAGTTCTGTTTGCTGCTCAGGACACCACTGCCAGTGTTCTGACATGGGTTGTCAAATATCTCCATGATAATCAGAAAGTTCTAGAAGCTGTCAAGGTGGTGTTGGAGAGCTTGAGAATGGCGAGTATTATATCATTCACTTTTAGGGAAGCTGTGGCAGATGTTGAATACAATGGATATTTAATTCCAAAGGGTTGGAAAGTAATGCCTTTGTTCAGGAATATTCATCACAATCCTGACTACTTTGTTGACCCTCACAAATTTGATCCTTCAAGATTTGAGGTTGCTCCAAGACCCAATACATTCATGCCATTTGGCGGTGGGGTCCATGCCTGCCCTGGAAATGAGCTTGCCAAGCTTGAAATCTTGATCATGATTCATCATCTAGTCACCAAATTCAGGTGGGAATTGGCAGGAGAGAGAGATGGGATTCAGCATGGGCCATTTCCAGTGCCTATGGATGGGCTTCCAATCAGAGTCTGGAGATTATCCACATGA 1326 45.02 MMPQNFLLISIFPLALLLLLPLIFFHVQKNKNIAKKLPPGSMGWPLIGETFRLYSQHPSSFFLGKQKRYGDIFKTHILGCPCVMLATPEAARFVLVTQAHLFKPTYPQSKERLIGPSALFFHQSETHLRLRKLIQSSLSPDPVRALVPDIHALAVSTLPAWLNGHLINTFHQMKKFSFEVGILAIFGHVEEANYRGELLRNYSIVNKGYNSFPTNIPGTLYKKALKARKRLGEIISSIISEKRKELVEKNLLGCLLKWRDENGESLSDEQIADNIIGVLFAAQDTTASVLTWVVKYLHDNQKVLEAVKVVLESLRMASIISFTFREAVADVEYNGYLIPKGWKVMPLFRNIHHNPDYFVDPHKFDPSRFEVAPRPNTFMPFGGGVHACPGNELAKLEILIMIHHLVTKFRWELAGERDGIQHGPFPVPMDGLPIRVWRLST 441
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 39626229 39630354 - Maker00025447 Lcy13g2072 652377
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2072 441 CDD CYP90-like 66 436 - -
Lcy13g2072 441 PRINTS P450 superfamily signature 281 298 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy13g2072 441 PRINTS P450 superfamily signature 379 388 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy13g2072 441 PRINTS P450 superfamily signature 388 399 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy13g2072 441 PRINTS P450 superfamily signature 308 319 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy13g2072 441 PRINTS E-class P450 group I signature 66 85 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy13g2072 441 PRINTS E-class P450 group I signature 347 371 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy13g2072 441 PRINTS E-class P450 group I signature 307 325 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy13g2072 441 PRINTS E-class P450 group I signature 378 388 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy13g2072 441 PRINTS E-class P450 group I signature 388 411 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy13g2072 441 PRINTS E-class P450 group I signature 270 287 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy13g2072 441 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 381 390 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Lcy13g2072 441 SUPERFAMILY Cytochrome P450 35 437 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy13g2072 441 Gene3D Cytochrome P450 26 439 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy13g2072 441 Pfam Cytochrome P450 308 417 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy13g2072 441 Pfam Cytochrome P450 38 307 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy13g2072 441 PANTHER CYTOCHROME P450 26 36 414 - GO:0004497(PANTHER)|GO:0010295(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0164 Lcy-Chr11:1797533 Lcy13g2072 Lcy-Chr13:39626229 6.11E-61 dispersed
Lcy13g2072 Lcy-Chr13:39626229 Lcy3g1118 Lcy-Chr3:36138000 1.13E-188 dispersed
Lcy10g2074 Lcy-Chr10:44811943 Lcy13g2072 Lcy-Chr13:39626229 7.76E-48 transposed
Lcy13g2072 Lcy-Chr13:39626229 Lcy9g2109 Lcy-Chr9:45787319 1.24E-226 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2072 K09843 - vvi:100245540 627.476