Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy13g2072 | ATGATGCCTCAAAATTTTCTACTCATTTCCATTTTTCCTCTAGCCCTCCTCCTTCTTCTACCTCTAATTTTCTTTCATGTCCAAAAGAACAAGAATATTGCAAAGAAGCTCCCTCCTGGCTCAATGGGCTGGCCCTTAATCGGCGAGACCTTTCGTCTCTACTCTCAACATCCATCCTCCTTCTTCCTTGGAAAACAAAAAAGGTATGGGGATATATTCAAGACCCACATTCTTGGGTGTCCGTGTGTGATGTTGGCGACTCCCGAGGCGGCTCGGTTCGTGCTAGTGACGCAGGCTCATCTCTTCAAACCCACATACCCACAAAGCAAAGAGCGTCTAATCGGACCATCGGCTCTGTTTTTCCACCAAAGCGAAACCCATTTGCGGCTGCGTAAGCTAATCCAAAGCTCCCTCTCACCGGACCCTGTCCGAGCCCTGGTCCCCGACATCCACGCCCTCGCCGTCTCTACATTGCCGGCATGGCTCAATGGCCATCTCATCAACACTTTCCATCAAATGAAGAAGTTCTCTTTTGAAGTCGGAATTTTGGCGATTTTTGGGCATGTGGAGGAGGCCAATTACAGAGGCGAATTACTGAGAAACTATTCCATAGTGAACAAAGGCTACAATTCTTTTCCAACCAACATTCCCGGAACGCTTTACAAAAAAGCACTTAAAGCGAGAAAGAGGCTGGGAGAGATCATAAGCAGTATAATCTCAGAGAAGAGAAAGGAATTGGTGGAGAAGAATTTGTTGGGTTGTTTGCTAAAATGGAGAGATGAAAATGGAGAAAGTCTAAGTGATGAACAGATTGCTGATAATATAATTGGAGTTCTGTTTGCTGCTCAGGACACCACTGCCAGTGTTCTGACATGGGTTGTCAAATATCTCCATGATAATCAGAAAGTTCTAGAAGCTGTCAAGGTGGTGTTGGAGAGCTTGAGAATGGCGAGTATTATATCATTCACTTTTAGGGAAGCTGTGGCAGATGTTGAATACAATGGATATTTAATTCCAAAGGGTTGGAAAGTAATGCCTTTGTTCAGGAATATTCATCACAATCCTGACTACTTTGTTGACCCTCACAAATTTGATCCTTCAAGATTTGAGGTTGCTCCAAGACCCAATACATTCATGCCATTTGGCGGTGGGGTCCATGCCTGCCCTGGAAATGAGCTTGCCAAGCTTGAAATCTTGATCATGATTCATCATCTAGTCACCAAATTCAGGTGGGAATTGGCAGGAGAGAGAGATGGGATTCAGCATGGGCCATTTCCAGTGCCTATGGATGGGCTTCCAATCAGAGTCTGGAGATTATCCACATGA | 1326 | 45.02 | MMPQNFLLISIFPLALLLLLPLIFFHVQKNKNIAKKLPPGSMGWPLIGETFRLYSQHPSSFFLGKQKRYGDIFKTHILGCPCVMLATPEAARFVLVTQAHLFKPTYPQSKERLIGPSALFFHQSETHLRLRKLIQSSLSPDPVRALVPDIHALAVSTLPAWLNGHLINTFHQMKKFSFEVGILAIFGHVEEANYRGELLRNYSIVNKGYNSFPTNIPGTLYKKALKARKRLGEIISSIISEKRKELVEKNLLGCLLKWRDENGESLSDEQIADNIIGVLFAAQDTTASVLTWVVKYLHDNQKVLEAVKVVLESLRMASIISFTFREAVADVEYNGYLIPKGWKVMPLFRNIHHNPDYFVDPHKFDPSRFEVAPRPNTFMPFGGGVHACPGNELAKLEILIMIHHLVTKFRWELAGERDGIQHGPFPVPMDGLPIRVWRLST | 441 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 39626229 | 39630354 | - | Maker00025447 | Lcy13g2072 | 652377 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy13g2072 | 441 | CDD | CYP90-like | 66 | 436 | - | - | |
| Lcy13g2072 | 441 | PRINTS | P450 superfamily signature | 281 | 298 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g2072 | 441 | PRINTS | P450 superfamily signature | 379 | 388 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g2072 | 441 | PRINTS | P450 superfamily signature | 388 | 399 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g2072 | 441 | PRINTS | P450 superfamily signature | 308 | 319 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g2072 | 441 | PRINTS | E-class P450 group I signature | 66 | 85 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g2072 | 441 | PRINTS | E-class P450 group I signature | 347 | 371 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g2072 | 441 | PRINTS | E-class P450 group I signature | 307 | 325 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g2072 | 441 | PRINTS | E-class P450 group I signature | 378 | 388 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g2072 | 441 | PRINTS | E-class P450 group I signature | 388 | 411 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g2072 | 441 | PRINTS | E-class P450 group I signature | 270 | 287 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g2072 | 441 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 381 | 390 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lcy13g2072 | 441 | SUPERFAMILY | Cytochrome P450 | 35 | 437 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g2072 | 441 | Gene3D | Cytochrome P450 | 26 | 439 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g2072 | 441 | Pfam | Cytochrome P450 | 308 | 417 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g2072 | 441 | Pfam | Cytochrome P450 | 38 | 307 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g2072 | 441 | PANTHER | CYTOCHROME P450 26 | 36 | 414 | - | GO:0004497(PANTHER)|GO:0010295(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy11g0164 | Lcy-Chr11:1797533 | Lcy13g2072 | Lcy-Chr13:39626229 | 6.11E-61 | dispersed | |
| Lcy13g2072 | Lcy-Chr13:39626229 | Lcy3g1118 | Lcy-Chr3:36138000 | 1.13E-188 | dispersed | |
| Lcy10g2074 | Lcy-Chr10:44811943 | Lcy13g2072 | Lcy-Chr13:39626229 | 7.76E-48 | transposed | |
| Lcy13g2072 | Lcy-Chr13:39626229 | Lcy9g2109 | Lcy-Chr9:45787319 | 1.24E-226 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy13g2072 | K09843 | - | vvi:100245540 | 627.476 |