Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2073 ATGGACGGCGGTGGTGATGGTACTGTGAGGCTTGGGGCTCTGAACTTGAAGCCGGATCGGAGCGGCTTTGATTTGGGCCCTGATGTGTCTGTTTCGTCTCCGGTGACCAGGCAGAAAGCCGCTGCTGCTAAACAGTTCATTGAGAATCATTACAAGAACTATCTCCAAGGTCTGCAGGATCGCAAGGAGAGACGGAGGACGCTTCAACGAAGAGTGCAAGAAGCTCAGATGTCAGTTGAAGAACAAGAAGAGATGCTGAGGAATTTGGAACGCAGAGAAACAGAATTTATGAGACTGCAAAGACGTAAAGTTGGAATTGATGACTTTGAACAATTAACAGTTATCGGTAAAGGTGCATTCGGTGAGGTTAGATTATGTCGTGCAAAAGGAACTGGGGAAATTTTTGCCATGAAGAAGCTGAAGAAATCAGAGATGCTTAGCCGTGGGCAGGTTGAGCATGTTCGATCCGAGAGGAATTTACTTGCAGAGGTTGATAGTCGGTGCATTGTAAAACTCTTCTATTCTTTTCAAGATTCTGAATTCTTATACCTTATTATGGAGTATTTACCTGGTGGTGACATTATGACATTGCTAATGAGAGAAGACATTCTGTCAGAGGATGTTGCTCGCTTTTACATAGCAGAGAGCATTTTAGCTATTCATTCAATTCATCAGCACAATTATATACATAGGGATATAAAACCAGATAACCTGATACTAGATAAAAATGGTCATCTGAAGCTTTCAGATTTTGGCTTGTGCAAGCCTCTGGATGATAAGTATTCGAGTATACTTTTGAATGACGAAGATTTAATAGCCCAGCAAGCCAAAAGTGAAGGTCAAGGTCATACTGACTCTAATGGATCCCACTGGATGATGCCAAAAGAACAAATTCAACAGTGGAAGCGTAATCGTCGTGCATTGGCCTTTTCAACTGTTGGGACCCTGGATTATATGGCACCTGAAGTATTGCTTAAGAAAGGATATGGAATGGAGTGTGATTGGTGGTCATTAGGGGCCATTATGTATGAGATGCTGGCTGGTTATCCTCCTTTTTGTTCTGATGATCCAAGGATGACTTTCCGCAAGATTATAAATTGGAGAACCTGCCTGAAATTTCCCGAGGAACCAAAAATCTCAGAGGAAGCTAAGGATCTGATCAGCCACTTGCTATGTGATGTTGAAACGAGGTTGGGAACACGAGGAATAGAAGAAATTAAGGCACATCCATGGTTCAAAGGCATTCAATGGGATAAGCTGTATGAAATGGAAGCTGCATACCAACCAACTGTCACTGGAGAACTGGACACTCAGAACTTTGAGAAGTTTCCTGAAGTACAAGACCCTCCATCAGAAATGCCAACTGTTGGACCTTGGAGGAAGGTAATAACGTACTCTTCCAGCAAGAATGATAGTGGAATGGTGCATGCGCTAGCTAAGCTATTATGTCTGATGCTAACTTCAAAAGATACCAATTTCATTGGATTTACTTTTAAGAAGTCAAACGTCAAATCACTTGAGAGTACAGGTACGGATATGCATTCGAATACATCATCGAAAACACCATCTCTGGTTTCCTTGTTGGGTATGGCTGTCTTCTCCTCCCCTTTCCATTTTCCTTGTGTTCATTTATGA 1635 42.26 MDGGGDGTVRLGALNLKPDRSGFDLGPDVSVSSPVTRQKAAAAKQFIENHYKNYLQGLQDRKERRRTLQRRVQEAQMSVEEQEEMLRNLERRETEFMRLQRRKVGIDDFEQLTVIGKGAFGEVRLCRAKGTGEIFAMKKLKKSEMLSRGQVEHVRSERNLLAEVDSRCIVKLFYSFQDSEFLYLIMEYLPGGDIMTLLMREDILSEDVARFYIAESILAIHSIHQHNYIHRDIKPDNLILDKNGHLKLSDFGLCKPLDDKYSSILLNDEDLIAQQAKSEGQGHTDSNGSHWMMPKEQIQQWKRNRRALAFSTVGTLDYMAPEVLLKKGYGMECDWWSLGAIMYEMLAGYPPFCSDDPRMTFRKIINWRTCLKFPEEPKISEEAKDLISHLLCDVETRLGTRGIEEIKAHPWFKGIQWDKLYEMEAAYQPTVTGELDTQNFEKFPEVQDPPSEMPTVGPWRKVITYSSSKNDSGMVHALAKLLCLMLTSKDTNFIGFTFKKSNVKSLESTGTDMHSNTSSKTPSLVSLLGMAVFSSPFHFPCVHL 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39651446 39656618 - Maker00025171 Lcy13g2073 652378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2073 544 Coils Coil 58 102 - -
Lcy13g2073 544 SMART serkin_6 109 412 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g2073 544 FunFam Non-specific serine/threonine protein kinase 193 260 - -
Lcy13g2073 544 SMART pkinase_C_6 413 500 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g2073 544 CDD MobB_NDR_LATS-like 43 104 - -
Lcy13g2073 544 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524(InterPro)
Lcy13g2073 544 Pfam Protein kinase domain 109 412 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g2073 544 CDD STKc_NDR_like 107 499 - -
Lcy13g2073 544 FunFam Non-specific serine/threonine protein kinase 311 430 - -
Lcy13g2073 544 Gene3D Phosphorylase Kinase; domain 1 106 441 - -
Lcy13g2073 544 ProSiteProfiles Protein kinase domain profile. 109 412 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g2073 544 FunFam Non-specific serine/threonine protein kinase 80 192 - -
Lcy13g2073 544 SUPERFAMILY Protein kinase-like (PK-like) 86 462 IPR011009 -
Lcy13g2073 544 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy13g2073 544 PANTHER SERINE/THREONINE-PROTEIN KINASE 42 502 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Lcy13g2073 544 Pfam Protein kinase C terminal domain 431 498 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g2073 544 ProSiteProfiles AGC-kinase C-terminal domain profile. 413 508 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g2073 544 Gene3D Transferase(Phosphotransferase) domain 1 193 430 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2073 Lcy-Chr13:39651446 Lcy3g1277 Lcy-Chr3:38645228 7.08E-206 dispersed
Lcy13g2073 Lcy-Chr13:39651446 Lcy9g1957 Lcy-Chr9:44530573 3.04E-122 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65589 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2073 K08790 - csv:101222805 978.008