Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy13g2073 | ATGGACGGCGGTGGTGATGGTACTGTGAGGCTTGGGGCTCTGAACTTGAAGCCGGATCGGAGCGGCTTTGATTTGGGCCCTGATGTGTCTGTTTCGTCTCCGGTGACCAGGCAGAAAGCCGCTGCTGCTAAACAGTTCATTGAGAATCATTACAAGAACTATCTCCAAGGTCTGCAGGATCGCAAGGAGAGACGGAGGACGCTTCAACGAAGAGTGCAAGAAGCTCAGATGTCAGTTGAAGAACAAGAAGAGATGCTGAGGAATTTGGAACGCAGAGAAACAGAATTTATGAGACTGCAAAGACGTAAAGTTGGAATTGATGACTTTGAACAATTAACAGTTATCGGTAAAGGTGCATTCGGTGAGGTTAGATTATGTCGTGCAAAAGGAACTGGGGAAATTTTTGCCATGAAGAAGCTGAAGAAATCAGAGATGCTTAGCCGTGGGCAGGTTGAGCATGTTCGATCCGAGAGGAATTTACTTGCAGAGGTTGATAGTCGGTGCATTGTAAAACTCTTCTATTCTTTTCAAGATTCTGAATTCTTATACCTTATTATGGAGTATTTACCTGGTGGTGACATTATGACATTGCTAATGAGAGAAGACATTCTGTCAGAGGATGTTGCTCGCTTTTACATAGCAGAGAGCATTTTAGCTATTCATTCAATTCATCAGCACAATTATATACATAGGGATATAAAACCAGATAACCTGATACTAGATAAAAATGGTCATCTGAAGCTTTCAGATTTTGGCTTGTGCAAGCCTCTGGATGATAAGTATTCGAGTATACTTTTGAATGACGAAGATTTAATAGCCCAGCAAGCCAAAAGTGAAGGTCAAGGTCATACTGACTCTAATGGATCCCACTGGATGATGCCAAAAGAACAAATTCAACAGTGGAAGCGTAATCGTCGTGCATTGGCCTTTTCAACTGTTGGGACCCTGGATTATATGGCACCTGAAGTATTGCTTAAGAAAGGATATGGAATGGAGTGTGATTGGTGGTCATTAGGGGCCATTATGTATGAGATGCTGGCTGGTTATCCTCCTTTTTGTTCTGATGATCCAAGGATGACTTTCCGCAAGATTATAAATTGGAGAACCTGCCTGAAATTTCCCGAGGAACCAAAAATCTCAGAGGAAGCTAAGGATCTGATCAGCCACTTGCTATGTGATGTTGAAACGAGGTTGGGAACACGAGGAATAGAAGAAATTAAGGCACATCCATGGTTCAAAGGCATTCAATGGGATAAGCTGTATGAAATGGAAGCTGCATACCAACCAACTGTCACTGGAGAACTGGACACTCAGAACTTTGAGAAGTTTCCTGAAGTACAAGACCCTCCATCAGAAATGCCAACTGTTGGACCTTGGAGGAAGGTAATAACGTACTCTTCCAGCAAGAATGATAGTGGAATGGTGCATGCGCTAGCTAAGCTATTATGTCTGATGCTAACTTCAAAAGATACCAATTTCATTGGATTTACTTTTAAGAAGTCAAACGTCAAATCACTTGAGAGTACAGGTACGGATATGCATTCGAATACATCATCGAAAACACCATCTCTGGTTTCCTTGTTGGGTATGGCTGTCTTCTCCTCCCCTTTCCATTTTCCTTGTGTTCATTTATGA | 1635 | 42.26 | MDGGGDGTVRLGALNLKPDRSGFDLGPDVSVSSPVTRQKAAAAKQFIENHYKNYLQGLQDRKERRRTLQRRVQEAQMSVEEQEEMLRNLERRETEFMRLQRRKVGIDDFEQLTVIGKGAFGEVRLCRAKGTGEIFAMKKLKKSEMLSRGQVEHVRSERNLLAEVDSRCIVKLFYSFQDSEFLYLIMEYLPGGDIMTLLMREDILSEDVARFYIAESILAIHSIHQHNYIHRDIKPDNLILDKNGHLKLSDFGLCKPLDDKYSSILLNDEDLIAQQAKSEGQGHTDSNGSHWMMPKEQIQQWKRNRRALAFSTVGTLDYMAPEVLLKKGYGMECDWWSLGAIMYEMLAGYPPFCSDDPRMTFRKIINWRTCLKFPEEPKISEEAKDLISHLLCDVETRLGTRGIEEIKAHPWFKGIQWDKLYEMEAAYQPTVTGELDTQNFEKFPEVQDPPSEMPTVGPWRKVITYSSSKNDSGMVHALAKLLCLMLTSKDTNFIGFTFKKSNVKSLESTGTDMHSNTSSKTPSLVSLLGMAVFSSPFHFPCVHL | 544 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 39651446 | 39656618 | - | Maker00025171 | Lcy13g2073 | 652378 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy13g2073 | 544 | Coils | Coil | 58 | 102 | - | - | |
Lcy13g2073 | 544 | SMART | serkin_6 | 109 | 412 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy13g2073 | 544 | FunFam | Non-specific serine/threonine protein kinase | 193 | 260 | - | - | |
Lcy13g2073 | 544 | SMART | pkinase_C_6 | 413 | 500 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy13g2073 | 544 | CDD | MobB_NDR_LATS-like | 43 | 104 | - | - | |
Lcy13g2073 | 544 | ProSitePatterns | Protein kinases ATP-binding region signature. | 115 | 138 | IPR017441 | GO:0005524(InterPro) | |
Lcy13g2073 | 544 | Pfam | Protein kinase domain | 109 | 412 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy13g2073 | 544 | CDD | STKc_NDR_like | 107 | 499 | - | - | |
Lcy13g2073 | 544 | FunFam | Non-specific serine/threonine protein kinase | 311 | 430 | - | - | |
Lcy13g2073 | 544 | Gene3D | Phosphorylase Kinase; domain 1 | 106 | 441 | - | - | |
Lcy13g2073 | 544 | ProSiteProfiles | Protein kinase domain profile. | 109 | 412 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy13g2073 | 544 | FunFam | Non-specific serine/threonine protein kinase | 80 | 192 | - | - | |
Lcy13g2073 | 544 | SUPERFAMILY | Protein kinase-like (PK-like) | 86 | 462 | IPR011009 | - | |
Lcy13g2073 | 544 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 228 | 240 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy13g2073 | 544 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 42 | 502 | IPR050236 | GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER) | |
Lcy13g2073 | 544 | Pfam | Protein kinase C terminal domain | 431 | 498 | IPR017892 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy13g2073 | 544 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 413 | 508 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy13g2073 | 544 | Gene3D | Transferase(Phosphotransferase) domain 1 | 193 | 430 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy13g2073 | Lcy-Chr13:39651446 | Lcy3g1277 | Lcy-Chr3:38645228 | 7.08E-206 | dispersed | |
Lcy13g2073 | Lcy-Chr13:39651446 | Lcy9g1957 | Lcy-Chr9:44530573 | 3.04E-122 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65589 | None | None | None | None | Lcy | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy13g2073 | K08790 | - | csv:101222805 | 978.008 |