Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2085 ATGCAAGAGATGGTCGTCGACGCGGCGGATGAAGGTCGTTGGCACGGCGGAGTGATTGGAGCTTCAGTTTTAATTCTGCAGAACTTGGAAGAGATGAATTTCAAGGATTTTGGGAATGACCCATCTGCCGTAAACGGCGGAGGAGGTGGAAGGCCTCCGGCGAACTATCCATTAGCGCGGCAATCATCGATCTACTCGCTGACCTTCGATGAATTTCAGAATATGGGGAGTATAGGCAAGGATTTTGGGTCAATGAACATGGATGAGCTGTTGAAGAACATTTGGAGCGCTGAAGAAATGCAAACGATGGCATCTTCTGCTGCTGCTGCTGCTGCTGCTAAAGAAGGGACTGGTACTGTTGGTGGTAGTGGTGGGTATTTGCAGAGACAGGGCTCTTTGACGCTGCCTCGTACACTCAGCCAGAAGAAGGTCGATGAGGTATGGAAGGACATAATCAATGAACATGGTGGTGCTAAAGATGGGAATACTGTTGCTTCTAATTTGCAACAGAGGCAGCAGACTCTTGGGGAGATGACACTTGAAGAGTTTTTGTTCAGAGCTGGAGTTGTGAGAGAGGATACTCAAGTGACTGGAAACGCCAACAATGGAGGATTCTTTGGCAATAACACTGGTTTTGGAATTGGTTTTCAGCGTCAGGGTAAGATTCCTGAGAATAACAATTACATTCCGATTCAATCGTCGAATTTATCATTGAATGTCAATGGAGTTAGAGCACATCAGCCGCAGCCAATATTTCCAAAGCAGCCTACTGTGACGTATGGATCTCAGTTGCCTTTACCCAGTGATGGTCAGCTAGCTAGTCCAGGAATTAGAGGTGGGATTATGGGGATTGGAGATCAAGCGTCCAGTACAAATCTGATGCAAGGCTCTGCCCTGCAGGGTGGAAGGATGGGAGTGGTTAATTTAGCAGCTGGGCCGATAACTGTAGCGACAGGATCGCCAGGGAACCAACTATCGTCTGATGGGATCGGAAAGAGCAATGGTGATACCTCGTCCGTGTCTCCGGTGCCTTATGCGCTTAATGGTGGAATCAGAGGGAGGAGAAGTAATGGGACTGTTGACAAAGTTGTCGAGAGGAGGCAGCGTAGAATGATAAAAAACAGAGAGTCAGCTGCTAGATCGCGGGCTCGAAAGCAGGCTTACACGATGGAATTGGAAGCAGAAGTTGCAAAGCTAAAAGAGGAGAACCAAGAACTGCGGCAAAAACAGGCAGTAATCATGGAAATGCAGAAGAACCGGGCATTGGAAGTAATGGATAAGCAACAAGGAATCAAGAAGCGATGCTTAAGACGAACGCAGACTGGTCCATGGTGA 1335 47.87 MQEMVVDAADEGRWHGGVIGASVLILQNLEEMNFKDFGNDPSAVNGGGGGRPPANYPLARQSSIYSLTFDEFQNMGSIGKDFGSMNMDELLKNIWSAEEMQTMASSAAAAAAAKEGTGTVGGSGGYLQRQGSLTLPRTLSQKKVDEVWKDIINEHGGAKDGNTVASNLQQRQQTLGEMTLEEFLFRAGVVREDTQVTGNANNGGFFGNNTGFGIGFQRQGKIPENNNYIPIQSSNLSLNVNGVRAHQPQPIFPKQPTVTYGSQLPLPSDGQLASPGIRGGIMGIGDQASSTNLMQGSALQGGRMGVVNLAAGPITVATGSPGNQLSSDGIGKSNGDTSSVSPVPYALNGGIRGRRSNGTVDKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENQELRQKQAVIMEMQKNRALEVMDKQQGIKKRCLRRTQTGPW 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39830207 39835491 + Maker00025132 Lcy13g2085 652390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2085 444 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 369 384 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g2085 444 Gene3D - 364 420 - -
Lcy13g2085 444 SMART brlzneu 362 426 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g2085 444 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 60 443 IPR043452 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0045893(InterPro)
Lcy13g2085 444 SUPERFAMILY Leucine zipper domain 366 414 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g2085 444 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 364 409 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g2085 444 CDD bZIP_plant_BZIP46 366 418 - -
Lcy13g2085 444 Coils Coil 382 419 - -
Lcy13g2085 444 MobiDBLite consensus disorder prediction 320 340 - -
Lcy13g2085 444 Pfam bZIP transcription factor 366 416 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g2085 444 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 5 364 421 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2085 Lcy-Chr13:39830207 Lcy3g1128 Lcy-Chr3:36270901 7.64E-115 dispersed
Lcy13g2085 Lcy-Chr13:39830207 Lcy5g0405 Lcy-Chr5:4275276 4.38E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19440 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2085 K14432 - csv:101223043 691.034