Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy13g2085 | ATGCAAGAGATGGTCGTCGACGCGGCGGATGAAGGTCGTTGGCACGGCGGAGTGATTGGAGCTTCAGTTTTAATTCTGCAGAACTTGGAAGAGATGAATTTCAAGGATTTTGGGAATGACCCATCTGCCGTAAACGGCGGAGGAGGTGGAAGGCCTCCGGCGAACTATCCATTAGCGCGGCAATCATCGATCTACTCGCTGACCTTCGATGAATTTCAGAATATGGGGAGTATAGGCAAGGATTTTGGGTCAATGAACATGGATGAGCTGTTGAAGAACATTTGGAGCGCTGAAGAAATGCAAACGATGGCATCTTCTGCTGCTGCTGCTGCTGCTGCTAAAGAAGGGACTGGTACTGTTGGTGGTAGTGGTGGGTATTTGCAGAGACAGGGCTCTTTGACGCTGCCTCGTACACTCAGCCAGAAGAAGGTCGATGAGGTATGGAAGGACATAATCAATGAACATGGTGGTGCTAAAGATGGGAATACTGTTGCTTCTAATTTGCAACAGAGGCAGCAGACTCTTGGGGAGATGACACTTGAAGAGTTTTTGTTCAGAGCTGGAGTTGTGAGAGAGGATACTCAAGTGACTGGAAACGCCAACAATGGAGGATTCTTTGGCAATAACACTGGTTTTGGAATTGGTTTTCAGCGTCAGGGTAAGATTCCTGAGAATAACAATTACATTCCGATTCAATCGTCGAATTTATCATTGAATGTCAATGGAGTTAGAGCACATCAGCCGCAGCCAATATTTCCAAAGCAGCCTACTGTGACGTATGGATCTCAGTTGCCTTTACCCAGTGATGGTCAGCTAGCTAGTCCAGGAATTAGAGGTGGGATTATGGGGATTGGAGATCAAGCGTCCAGTACAAATCTGATGCAAGGCTCTGCCCTGCAGGGTGGAAGGATGGGAGTGGTTAATTTAGCAGCTGGGCCGATAACTGTAGCGACAGGATCGCCAGGGAACCAACTATCGTCTGATGGGATCGGAAAGAGCAATGGTGATACCTCGTCCGTGTCTCCGGTGCCTTATGCGCTTAATGGTGGAATCAGAGGGAGGAGAAGTAATGGGACTGTTGACAAAGTTGTCGAGAGGAGGCAGCGTAGAATGATAAAAAACAGAGAGTCAGCTGCTAGATCGCGGGCTCGAAAGCAGGCTTACACGATGGAATTGGAAGCAGAAGTTGCAAAGCTAAAAGAGGAGAACCAAGAACTGCGGCAAAAACAGGCAGTAATCATGGAAATGCAGAAGAACCGGGCATTGGAAGTAATGGATAAGCAACAAGGAATCAAGAAGCGATGCTTAAGACGAACGCAGACTGGTCCATGGTGA | 1335 | 47.87 | MQEMVVDAADEGRWHGGVIGASVLILQNLEEMNFKDFGNDPSAVNGGGGGRPPANYPLARQSSIYSLTFDEFQNMGSIGKDFGSMNMDELLKNIWSAEEMQTMASSAAAAAAAKEGTGTVGGSGGYLQRQGSLTLPRTLSQKKVDEVWKDIINEHGGAKDGNTVASNLQQRQQTLGEMTLEEFLFRAGVVREDTQVTGNANNGGFFGNNTGFGIGFQRQGKIPENNNYIPIQSSNLSLNVNGVRAHQPQPIFPKQPTVTYGSQLPLPSDGQLASPGIRGGIMGIGDQASSTNLMQGSALQGGRMGVVNLAAGPITVATGSPGNQLSSDGIGKSNGDTSSVSPVPYALNGGIRGRRSNGTVDKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENQELRQKQAVIMEMQKNRALEVMDKQQGIKKRCLRRTQTGPW | 444 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 39830207 | 39835491 | + | Maker00025132 | Lcy13g2085 | 652390 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy13g2085 | 444 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 369 | 384 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy13g2085 | 444 | Gene3D | - | 364 | 420 | - | - | |
Lcy13g2085 | 444 | SMART | brlzneu | 362 | 426 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy13g2085 | 444 | PANTHER | CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED | 60 | 443 | IPR043452 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0045893(InterPro) | |
Lcy13g2085 | 444 | SUPERFAMILY | Leucine zipper domain | 366 | 414 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy13g2085 | 444 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 364 | 409 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy13g2085 | 444 | CDD | bZIP_plant_BZIP46 | 366 | 418 | - | - | |
Lcy13g2085 | 444 | Coils | Coil | 382 | 419 | - | - | |
Lcy13g2085 | 444 | MobiDBLite | consensus disorder prediction | 320 | 340 | - | - | |
Lcy13g2085 | 444 | Pfam | bZIP transcription factor | 366 | 416 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy13g2085 | 444 | FunFam | ABSCISIC ACID-INSENSITIVE 5-like protein 5 | 364 | 421 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy13g2085 | Lcy-Chr13:39830207 | Lcy3g1128 | Lcy-Chr3:36270901 | 7.64E-115 | dispersed | |
Lcy13g2085 | Lcy-Chr13:39830207 | Lcy5g0405 | Lcy-Chr5:4275276 | 4.38E-42 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19440 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy13g2085 | K14432 | - | csv:101223043 | 691.034 |