Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2087 ATGGATGTTGACCATGTAAAGCCTGGGGATCAGATGGATATTCTGACTATGATTCAGCAGATGGGAAAATTTCCTGAGTTTTTTGAATTTACGGAACTGCCACTGCCACTGCCACTGCCACCCTCCGCTTTTGCTTTTGGTAGTTCCAATATTCCTGCCACTTCTCTCATGGAAAACCCAAATCCCACTTTTCCTTCTTCTAATCTCCCATCCACCCTTTCTAACGCCGCTAACCCTGTTGGACCGCCGTGTCTTCTGCAGTATTCCGCCGCTGGCCGCTGGAGAACCCATGTTGCCGCCACCGGAAATGCCGACACGAAGCAGAATTCAATGGCGGCGATGAGGGAGATGATCTACCGGATAGCGGCGATGCAGCCGATACACATAGACCCAGAATCGGTAAAAGCACCGAAACGGCGGAACGTGAAGATCTCAAAAGACCCACAGAGCGTAGCGGCGAGACATAGAAGAGAGAGAATAAGCGAGAGAATTAGAATACTTCAAAGAATAGTCCCCGGCGGCACCAAAATGGACACCGCCTCCATGTTAGACGAGGCCATTCATTACGTCAAGTTCTTGAAAAACCAAGTCCAATCCCTCGAAATAGCCGCCGCCGCCAACCGCCCCTCCGCCTTCGGCTTTCCGGCGGCCGGCGGGATTAATTACAAACACTTCCAAAGTGGACACGAGCACGTGAATGAATGA 705 51.21 MDVDHVKPGDQMDILTMIQQMGKFPEFFEFTELPLPLPLPPSAFAFGSSNIPATSLMENPNPTFPSSNLPSTLSNAANPVGPPCLLQYSAAGRWRTHVAATGNADTKQNSMAAMREMIYRIAAMQPIHIDPESVKAPKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKNQVQSLEIAAAANRPSAFGFPAAGGINYKHFQSGHEHVNE 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39848095 39849251 - Maker00025415 Lcy13g2087 652392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2087 234 FunFam BHLH transcription factor 147 211 - -
Lcy13g2087 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 148 203 IPR036638 GO:0046983(InterPro)
Lcy13g2087 234 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 77 209 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g2087 234 CDD bHLH_AtIND_like 145 201 - -
Lcy13g2087 234 Gene3D - 143 210 IPR036638 GO:0046983(InterPro)
Lcy13g2087 234 SMART finulus 150 199 IPR011598 GO:0046983(InterPro)
Lcy13g2087 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 144 193 IPR011598 GO:0046983(InterPro)
Lcy13g2087 234 Pfam Helix-loop-helix DNA-binding domain 153 194 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2087 Lcy-Chr13:39848095 Lcy8g0681 Lcy-Chr8:24954688 3.49E-49 dispersed
Lcy13g2087 Lcy-Chr13:39848095 Lcy13g2092 Lcy-Chr13:39899103 4.38E-08 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19441 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2087 - - - 0.0