Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy13g2091 | ATGTCTAATTATGCCTTCTTGAATGATCAGCTCTCGAGGAGGACCTCCATTTTTGGTTTGCGCTTGTGGGTCGTTCTGGGAATTTGCGTTGGTGCCGCCATTGTTATTGTTCTGTTCCTCATTTCGTTATGGTTCACTTCCAGGCGCAACAGTGCCTCTAAATCTAAACCCTCTCTGAACCCCACTATCCCAAATGAGTCCAAGGAAATCCAGGAAATACGAATCGACCATTCTCGGAACCCGACTCATTCTGACCCAAAAGTTCAATTGGCTTCTACCCCTGAGCCCTTGCCGGAGGCAGAGCCTCTAGCGACGCTGCTTCAGACGGAAGAAGGGAGCCCAGCTAGTGGACGCCATAGAATTCACATTGAAATTGGGAAGGACCACCGGATTTCGTACCTGGAGAGAGGCGGCGGTTCGTCCCACGGTAGTGGAGAGGCTCGGTCCGGCGATCAGGCACAGGTGGCTGTGCCGGAGGTTTCGCATTTGGGTTGGGGACATTGGTACACTCTCAGAGAGCTCGAGTATTCTACTAATTGTTTTGCGGATGAAAATGTAATTGGTGAGGGCGGATATGGCATTGTGTACCGTGGTGTTCTGGAGGACAACACTGTCGTAGCTATCAAAAATTTGCTCAATAACAGGGGACAGGCTGAGAAGGAGTTTAAGGTTGAAGTGGAAGCAATTGGACGCGTTCGGCACAAGAATCTGGTGCGTTTGCTTGGCTATTGTGCTGAAGGAGCTCATAGGATGCTTGTATACGAGTACATTGATAACGGAAACTTGGAACAGTGGCTTCATGGAGAAGTCGGGCCTTGTAGCCCTCTCACATGGGACATTCGAATGAATATAATAGTTGGAACAGCAAAAGGGTTAACGTATCTCCATGAGGGGCTCGAGCCTAAGGTTGTTCACCGTGATATCAAGTCAAGTAACATTTTGCTTGACAAGCAGTGGAATCCAAAGGTCTCTGACTTTGGCCTAGCAAAGCTTCTTGGATCAGAGAGGAGTTATGTAACAACTCGTGTGATGGGAACTTTCGGATATGTAGCTCCAGAATATGCTAGTACTGGCATGTTGAATGAAAAAAGTGATGTATATAGTTTTGGCATCCTCATTATGGAGATAATTTCAGGGAGAAATCCAGTAGATTATAGCCGTCCTTCAGGAGAGGTTAACCTAGTTGAGTGGCTTAAAACAATGGTTAGTAATCGAAATGCAGAGGGAGTTCTGGATCCTAAGTTGCCCGAGAAGCCTTCAACAAGGGCACTTAAGCGTGCTCTGTTAGTAGCTTTACGGTGCGTGGATCCTAATGTTCAGAAGAGGCCTAAAATGGGGCACGTAATTCATATGCTTGAAGCAGATGAGTTTCCTTTCCGAGATGATCGTAGAGTGGGACGGGAACCAGGACGATCACTGCTCAAGGAAAAGCTCATGGAAAGGCTTGTGAGTGAATCTGGAGAGAGCAGTGGATATGAAAGTGGTGCGACTCAAGCAAGCCGACATCTATGGAGAAAGCAAGAACTTGAAGAACAACAGCCTCGCGAACCTCACACTTTAAGGTGA | 1566 | 47.38 | MSNYAFLNDQLSRRTSIFGLRLWVVLGICVGAAIVIVLFLISLWFTSRRNSASKSKPSLNPTIPNESKEIQEIRIDHSRNPTHSDPKVQLASTPEPLPEAEPLATLLQTEEGSPASGRHRIHIEIGKDHRISYLERGGGSSHGSGEARSGDQAQVAVPEVSHLGWGHWYTLRELEYSTNCFADENVIGEGGYGIVYRGVLEDNTVVAIKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEYIDNGNLEQWLHGEVGPCSPLTWDIRMNIIVGTAKGLTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLLGSERSYVTTRVMGTFGYVAPEYASTGMLNEKSDVYSFGILIMEIISGRNPVDYSRPSGEVNLVEWLKTMVSNRNAEGVLDPKLPEKPSTRALKRALLVALRCVDPNVQKRPKMGHVIHMLEADEFPFRDDRRVGREPGRSLLKEKLMERLVSESGESSGYESGATQASRHLWRKQELEEQQPREPHTLR | 521 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 39893780 | 39897065 | - | Maker00025147 | Lcy13g2091 | 652396 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy13g2091 | 521 | ProSiteProfiles | Protein kinase domain profile. | 181 | 439 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy13g2091 | 521 | MobiDBLite | consensus disorder prediction | 487 | 501 | - | - | |
Lcy13g2091 | 521 | SUPERFAMILY | Protein kinase-like (PK-like) | 162 | 453 | IPR011009 | - | |
Lcy13g2091 | 521 | Pfam | Protein kinase domain | 183 | 450 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy13g2091 | 521 | FunFam | Putative receptor-like serine/threonine-protein kinase | 257 | 467 | - | - | |
Lcy13g2091 | 521 | CDD | STKc_IRAK | 187 | 453 | - | - | |
Lcy13g2091 | 521 | FunFam | Probable serine/threonine-protein kinase At1g01540 | 161 | 256 | - | - | |
Lcy13g2091 | 521 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 303 | 315 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy13g2091 | 521 | SMART | serkin_6 | 181 | 459 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy13g2091 | 521 | Gene3D | Transferase(Phosphotransferase) domain 1 | 257 | 463 | - | - | |
Lcy13g2091 | 521 | MobiDBLite | consensus disorder prediction | 482 | 521 | - | - | |
Lcy13g2091 | 521 | Gene3D | Phosphorylase Kinase; domain 1 | 146 | 256 | - | - | |
Lcy13g2091 | 521 | ProSitePatterns | Protein kinases ATP-binding region signature. | 187 | 209 | IPR017441 | GO:0005524(InterPro) | |
Lcy13g2091 | 521 | MobiDBLite | consensus disorder prediction | 134 | 153 | - | - | |
Lcy13g2091 | 521 | MobiDBLite | consensus disorder prediction | 503 | 521 | - | - | |
Lcy13g2091 | 521 | PANTHER | OS01G0323000 PROTEIN | 6 | 488 | IPR052232 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy13g2091 | Lcy-Chr13:39893780 | Lcy8g1625 | Lcy-Chr8:42832368 | 6.34E-173 | dispersed | |
Lcy1g0980 | Lcy-Chr1:8644986 | Lcy13g2091 | Lcy-Chr13:39893780 | 2.53E-247 | wgd | |
Lcy13g2091 | Lcy-Chr13:39893780 | Lcy4g0252 | Lcy-Chr4:3086033 | 1.86E-44 | wgd | |
Lcy13g2091 | Lcy-Chr13:39893780 | Lcy9g1979 | Lcy-Chr9:44705340 | 3.45E-27 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65590 | None | None | None | None | Lcy | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy13g2091 | - | - | - | 0.0 |