Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2091 ATGTCTAATTATGCCTTCTTGAATGATCAGCTCTCGAGGAGGACCTCCATTTTTGGTTTGCGCTTGTGGGTCGTTCTGGGAATTTGCGTTGGTGCCGCCATTGTTATTGTTCTGTTCCTCATTTCGTTATGGTTCACTTCCAGGCGCAACAGTGCCTCTAAATCTAAACCCTCTCTGAACCCCACTATCCCAAATGAGTCCAAGGAAATCCAGGAAATACGAATCGACCATTCTCGGAACCCGACTCATTCTGACCCAAAAGTTCAATTGGCTTCTACCCCTGAGCCCTTGCCGGAGGCAGAGCCTCTAGCGACGCTGCTTCAGACGGAAGAAGGGAGCCCAGCTAGTGGACGCCATAGAATTCACATTGAAATTGGGAAGGACCACCGGATTTCGTACCTGGAGAGAGGCGGCGGTTCGTCCCACGGTAGTGGAGAGGCTCGGTCCGGCGATCAGGCACAGGTGGCTGTGCCGGAGGTTTCGCATTTGGGTTGGGGACATTGGTACACTCTCAGAGAGCTCGAGTATTCTACTAATTGTTTTGCGGATGAAAATGTAATTGGTGAGGGCGGATATGGCATTGTGTACCGTGGTGTTCTGGAGGACAACACTGTCGTAGCTATCAAAAATTTGCTCAATAACAGGGGACAGGCTGAGAAGGAGTTTAAGGTTGAAGTGGAAGCAATTGGACGCGTTCGGCACAAGAATCTGGTGCGTTTGCTTGGCTATTGTGCTGAAGGAGCTCATAGGATGCTTGTATACGAGTACATTGATAACGGAAACTTGGAACAGTGGCTTCATGGAGAAGTCGGGCCTTGTAGCCCTCTCACATGGGACATTCGAATGAATATAATAGTTGGAACAGCAAAAGGGTTAACGTATCTCCATGAGGGGCTCGAGCCTAAGGTTGTTCACCGTGATATCAAGTCAAGTAACATTTTGCTTGACAAGCAGTGGAATCCAAAGGTCTCTGACTTTGGCCTAGCAAAGCTTCTTGGATCAGAGAGGAGTTATGTAACAACTCGTGTGATGGGAACTTTCGGATATGTAGCTCCAGAATATGCTAGTACTGGCATGTTGAATGAAAAAAGTGATGTATATAGTTTTGGCATCCTCATTATGGAGATAATTTCAGGGAGAAATCCAGTAGATTATAGCCGTCCTTCAGGAGAGGTTAACCTAGTTGAGTGGCTTAAAACAATGGTTAGTAATCGAAATGCAGAGGGAGTTCTGGATCCTAAGTTGCCCGAGAAGCCTTCAACAAGGGCACTTAAGCGTGCTCTGTTAGTAGCTTTACGGTGCGTGGATCCTAATGTTCAGAAGAGGCCTAAAATGGGGCACGTAATTCATATGCTTGAAGCAGATGAGTTTCCTTTCCGAGATGATCGTAGAGTGGGACGGGAACCAGGACGATCACTGCTCAAGGAAAAGCTCATGGAAAGGCTTGTGAGTGAATCTGGAGAGAGCAGTGGATATGAAAGTGGTGCGACTCAAGCAAGCCGACATCTATGGAGAAAGCAAGAACTTGAAGAACAACAGCCTCGCGAACCTCACACTTTAAGGTGA 1566 47.38 MSNYAFLNDQLSRRTSIFGLRLWVVLGICVGAAIVIVLFLISLWFTSRRNSASKSKPSLNPTIPNESKEIQEIRIDHSRNPTHSDPKVQLASTPEPLPEAEPLATLLQTEEGSPASGRHRIHIEIGKDHRISYLERGGGSSHGSGEARSGDQAQVAVPEVSHLGWGHWYTLRELEYSTNCFADENVIGEGGYGIVYRGVLEDNTVVAIKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEYIDNGNLEQWLHGEVGPCSPLTWDIRMNIIVGTAKGLTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLLGSERSYVTTRVMGTFGYVAPEYASTGMLNEKSDVYSFGILIMEIISGRNPVDYSRPSGEVNLVEWLKTMVSNRNAEGVLDPKLPEKPSTRALKRALLVALRCVDPNVQKRPKMGHVIHMLEADEFPFRDDRRVGREPGRSLLKEKLMERLVSESGESSGYESGATQASRHLWRKQELEEQQPREPHTLR 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39893780 39897065 - Maker00025147 Lcy13g2091 652396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2091 521 ProSiteProfiles Protein kinase domain profile. 181 439 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g2091 521 MobiDBLite consensus disorder prediction 487 501 - -
Lcy13g2091 521 SUPERFAMILY Protein kinase-like (PK-like) 162 453 IPR011009 -
Lcy13g2091 521 Pfam Protein kinase domain 183 450 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g2091 521 FunFam Putative receptor-like serine/threonine-protein kinase 257 467 - -
Lcy13g2091 521 CDD STKc_IRAK 187 453 - -
Lcy13g2091 521 FunFam Probable serine/threonine-protein kinase At1g01540 161 256 - -
Lcy13g2091 521 ProSitePatterns Serine/Threonine protein kinases active-site signature. 303 315 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy13g2091 521 SMART serkin_6 181 459 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g2091 521 Gene3D Transferase(Phosphotransferase) domain 1 257 463 - -
Lcy13g2091 521 MobiDBLite consensus disorder prediction 482 521 - -
Lcy13g2091 521 Gene3D Phosphorylase Kinase; domain 1 146 256 - -
Lcy13g2091 521 ProSitePatterns Protein kinases ATP-binding region signature. 187 209 IPR017441 GO:0005524(InterPro)
Lcy13g2091 521 MobiDBLite consensus disorder prediction 134 153 - -
Lcy13g2091 521 MobiDBLite consensus disorder prediction 503 521 - -
Lcy13g2091 521 PANTHER OS01G0323000 PROTEIN 6 488 IPR052232 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2091 Lcy-Chr13:39893780 Lcy8g1625 Lcy-Chr8:42832368 6.34E-173 dispersed
Lcy1g0980 Lcy-Chr1:8644986 Lcy13g2091 Lcy-Chr13:39893780 2.53E-247 wgd
Lcy13g2091 Lcy-Chr13:39893780 Lcy4g0252 Lcy-Chr4:3086033 1.86E-44 wgd
Lcy13g2091 Lcy-Chr13:39893780 Lcy9g1979 Lcy-Chr9:44705340 3.45E-27 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65590 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2091 - - - 0.0